RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GCC2Q8IWJ2 1684 aa22.71■■□□□ 1.23
SHMT2-232ENST00000557487 TRIM52Q96A61 297 aa22.7■■□□□ 1.22
SHMT2-232ENST00000557487 HIRIP3Q9BW71 556 aaPredicted RBP22.69■■□□□ 1.22
SHMT2-232ENST00000557487 ERICH6BQ5W0A0 696 aa22.68■■□□□ 1.22
SHMT2-232ENST00000557487 CARMIL2Q6F5E8 1435 aa22.66■■□□□ 1.22
SHMT2-232ENST00000557487 RBM19Q9Y4C8 960 aaKnown RBP22.65■■□□□ 1.22
SHMT2-232ENST00000557487 MIA2Q96PC5 1412 aa22.63■■□□□ 1.21
SHMT2-232ENST00000557487 DISP1Q96F81 1524 aa22.62■■□□□ 1.21
SHMT2-232ENST00000557487 EIF4G2P78344 907 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHMT2-232ENST00000557487 PTPRGP23470 1445 aa22.56■■□□□ 1.2
SHMT2-232ENST00000557487 CNTLNQ9NXG0 1405 aa22.56■■□□□ 1.2
SHMT2-232ENST00000557487 MAGI3Q5TCQ9 1506 aa22.55■■□□□ 1.2
SHMT2-232ENST00000557487 KIAA0556O60303 1618 aa22.54■■□□□ 1.2
SHMT2-232ENST00000557487 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
SHMT2-232ENST00000557487 HNRNPUQ00839 825 aaKnown RBP eCLIP22.54■■□□□ 1.2
SHMT2-232ENST00000557487 WASHC2AQ641Q2 1341 aa22.54■■□□□ 1.2
SHMT2-232ENST00000557487 DENND4BO75064 1496 aaPredicted RBP22.53■■□□□ 1.2
SHMT2-232ENST00000557487 EPRSP07814 1512 aaKnown RBP22.5■■□□□ 1.19
SHMT2-232ENST00000557487 FANCIQ9NVI1 1328 aa22.5■■□□□ 1.19
SHMT2-232ENST00000557487 ROCK1Q13464 1354 aa22.5■■□□□ 1.19
SHMT2-232ENST00000557487 NCOA1Q15788 1441 aa22.48■■□□□ 1.19
SHMT2-232ENST00000557487 CDK11AQ9UQ88 783 aaPredicted RBP22.48■■□□□ 1.19
SHMT2-232ENST00000557487 MPHOSPH9Q99550 1183 aa22.46■■□□□ 1.19
SHMT2-232ENST00000557487 RRP7BPQ9NSQ0 103 aa22.46■■□□□ 1.19
SHMT2-232ENST00000557487 CCDC7Q96M83 1385 aa22.44■■□□□ 1.18
SHMT2-232ENST00000557487 ADCY10Q96PN6 1610 aa22.43■■□□□ 1.18
SHMT2-232ENST00000557487 UHRF1BP1LA0JNW5 1464 aa22.43■■□□□ 1.18
SHMT2-232ENST00000557487 RPRD2Q5VT52 1461 aaKnown RBP22.43■■□□□ 1.18
SHMT2-232ENST00000557487 PPP4R2Q9NY27 417 aa22.41■■□□□ 1.18
SHMT2-232ENST00000557487 KDM6BO15054 1643 aa22.4■■□□□ 1.18
SHMT2-232ENST00000557487 POLR1AO95602 1720 aaPredicted RBP22.4■■□□□ 1.18
SHMT2-232ENST00000557487 ANKRD30BQ9BXX2 1392 aa22.39■■□□□ 1.18
SHMT2-232ENST00000557487 L3MBTL2Q969R5 705 aa22.39■■□□□ 1.17
SHMT2-232ENST00000557487 PRKRIP1Q9H875 184 aaPredicted RBP22.39■■□□□ 1.17
SHMT2-232ENST00000557487 ZBED9Q6R2W3 1325 aa22.38■■□□□ 1.17
SHMT2-232ENST00000557487 NPM1P06748 294 aaKnown RBP eCLIP22.38■■□□□ 1.17
SHMT2-232ENST00000557487 CHIC2Q9UKJ5 165 aa22.37■■□□□ 1.17
SHMT2-232ENST00000557487 DNMT1P26358 1616 aaKnown RBP22.37■■□□□ 1.17
SHMT2-232ENST00000557487 TEX14Q8IWB6 1497 aa22.36■■□□□ 1.17
SHMT2-232ENST00000557487 ABCC2Q92887 1545 aa22.36■■□□□ 1.17
SHMT2-232ENST00000557487 DAPK1P53355 1430 aa22.36■■□□□ 1.17
SHMT2-232ENST00000557487 SPATA31E1Q6ZUB1 1445 aa22.34■■□□□ 1.17
SHMT2-232ENST00000557487 CDK13Q14004 1512 aaKnown RBP22.33■■□□□ 1.16
SHMT2-232ENST00000557487 ABCA8O94911 1581 aa22.32■■□□□ 1.16
SHMT2-232ENST00000557487 PLB1Q6P1J6 1458 aa22.31■■□□□ 1.16
SHMT2-232ENST00000557487 ABCC5O15440 1437 aa22.29■■□□□ 1.16
SHMT2-232ENST00000557487 TRHP20396 242 aaPredicted RBP22.29■■□□□ 1.16
SHMT2-232ENST00000557487 MRS2Q9HD23 443 aa22.28■■□□□ 1.16
SHMT2-232ENST00000557487 MYT1LQ9UL68 1186 aa22.27■■□□□ 1.16
SHMT2-232ENST00000557487 MSH5O43196 834 aa22.26■■□□□ 1.15
SHMT2-232ENST00000557487 ARID4BQ4LE39 1312 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-232ENST00000557487 C11orf95C9JLR9 678 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-232ENST00000557487 KIF7Q2M1P5 1343 aa22.24■■□□□ 1.15
SHMT2-232ENST00000557487 NBPF8Q3BBV2 869 aa22.23■■□□□ 1.15
SHMT2-232ENST00000557487 ERICH6Q7L0X2 663 aa22.23■■□□□ 1.15
SHMT2-232ENST00000557487 CCDC184Q52MB2 194 aa22.22■■□□□ 1.15
SHMT2-232ENST00000557487 ABCC10Q5T3U5 1492 aa22.21■■□□□ 1.15
SHMT2-232ENST00000557487 IRX6P78412 446 aaPredicted RBP22.21■■□□□ 1.15
SHMT2-232ENST00000557487 MBD5Q9P267 1494 aa22.2■■□□□ 1.14
SHMT2-232ENST00000557487 SLC4A1APQ9BWU0 796 aaKnown RBP22.2■■□□□ 1.14
SHMT2-232ENST00000557487 SMG6Q86US8 1419 aaKnown RBP22.2■■□□□ 1.14
SHMT2-232ENST00000557487 FAM9BQ8IZU0 186 aa22.19■■□□□ 1.14
SHMT2-232ENST00000557487 BCL11AQ9H165 835 aa22.19■■□□□ 1.14
SHMT2-232ENST00000557487 ZCCHC11Q5TAX3 1644 aaKnown RBP22.19■■□□□ 1.14
SHMT2-232ENST00000557487 ASXL2Q76L83 1435 aa22.18■■□□□ 1.14
SHMT2-232ENST00000557487 RAPGEF6Q8TEU7 1601 aa22.18■■□□□ 1.14
SHMT2-232ENST00000557487 ADGBQ8N7X0 1667 aa22.18■■□□□ 1.14
SHMT2-232ENST00000557487 ITSN2Q9NZM3 1697 aa22.17■■□□□ 1.14
SHMT2-232ENST00000557487 ADGRL2O95490 1459 aa22.17■■□□□ 1.14
SHMT2-232ENST00000557487 PZPP20742 1482 aa22.17■■□□□ 1.14
SHMT2-232ENST00000557487 NUP153P49790 1475 aaKnown RBP22.17■■□□□ 1.14
SHMT2-232ENST00000557487 FOXD1Q16676 465 aa22.16■■□□□ 1.14
SHMT2-232ENST00000557487 ROCK2O75116 1388 aaKnown RBP22.15■■□□□ 1.14
SHMT2-232ENST00000557487 KIAA1107Q9UPP5 1409 aa22.15■■□□□ 1.14
SHMT2-232ENST00000557487 ATP10BO94823 1461 aa22.14■■□□□ 1.13
SHMT2-232ENST00000557487 KIF14Q15058 1648 aa22.14■■□□□ 1.13
SHMT2-232ENST00000557487 DIP2BQ9P265 1576 aa22.13■■□□□ 1.13
SHMT2-232ENST00000557487 TROQ12816 1431 aaPredicted RBP22.13■■□□□ 1.13
SHMT2-232ENST00000557487 DHX29Q7Z478 1369 aaKnown RBP22.12■■□□□ 1.13
SHMT2-232ENST00000557487 FAM69CQ0P6D2 419 aa22.12■■□□□ 1.13
SHMT2-232ENST00000557487 KIF13AQ9H1H9 1805 aa22.12■■□□□ 1.13
SHMT2-232ENST00000557487 RNF123Q5XPI4 1314 aa22.11■■□□□ 1.13
SHMT2-232ENST00000557487 CAMSAP2Q08AD1 1489 aa22.11■■□□□ 1.13
SHMT2-232ENST00000557487 UHRF1BP1Q6BDS2 1440 aa22.09■■□□□ 1.13
SHMT2-232ENST00000557487 WDR7Q9Y4E6 1490 aa22.09■■□□□ 1.13
SHMT2-232ENST00000557487 CROCC2H7BZ55 1655 aa22.08■■□□□ 1.13
SHMT2-232ENST00000557487 NUDCQ9Y266 331 aa22.08■■□□□ 1.13
SHMT2-232ENST00000557487 GLI2P10070 1586 aa22.08■■□□□ 1.13
SHMT2-232ENST00000557487 USP47Q96K76 1375 aa22.08■■□□□ 1.13
SHMT2-232ENST00000557487 KTN1Q86UP2 1357 aaKnown RBP22.07■■□□□ 1.12
SHMT2-232ENST00000557487 KDM5CP41229 1560 aa22.06■■□□□ 1.12
SHMT2-232ENST00000557487 ARHGEF12Q9NZN5 1544 aa22.06■■□□□ 1.12
SHMT2-232ENST00000557487 B4GALNT3Q6L9W6 998 aa22.06■■□□□ 1.12
SHMT2-232ENST00000557487 ANKRD30AQ9BXX3 1397 aa22.05■■□□□ 1.12
SHMT2-232ENST00000557487 ZNF644Q9H582 1327 aaPredicted RBP22.05■■□□□ 1.12
SHMT2-232ENST00000557487 RALGAPBQ86X10 1494 aa22.04■■□□□ 1.12
SHMT2-232ENST00000557487 ARID3CA6NKF2 412 aa22.03■■□□□ 1.12
SHMT2-232ENST00000557487 CFDP1Q9UEE9 299 aaPredicted RBP22.03■■□□□ 1.12
SHMT2-232ENST00000557487 GPATCH8Q9UKJ3 1502 aaKnown RBP22.03■■□□□ 1.12
SHMT2-232ENST00000557487 BCORL1Q5H9F3 1711 aa22.02■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms