RNA–Protein interactions for RNA: ENST00000556564.5

PTPN21-208, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN21, Length 6,166 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-208ENST00000556564 NUDCQ9Y266 331 aa22.9■■□□□ 1.26
PTPN21-208ENST00000556564 HSP90AA1P07900 732 aaKnown RBP22.89■■□□□ 1.25
PTPN21-208ENST00000556564 PRDM2Q13029 1718 aa22.88■■□□□ 1.25
PTPN21-208ENST00000556564 PAK3O75914 559 aaPredicted RBP22.88■■□□□ 1.25
PTPN21-208ENST00000556564 UPF2Q9HAU5 1272 aaKnown RBP22.87■■□□□ 1.25
PTPN21-208ENST00000556564 FAM69CQ0P6D2 419 aa22.84■■□□□ 1.25
PTPN21-208ENST00000556564 RAB3GAP2Q9H2M9 1393 aa22.84■■□□□ 1.25
PTPN21-208ENST00000556564 EID1Q9Y6B2 187 aa22.83■■□□□ 1.25
PTPN21-208ENST00000556564 IGF1RP08069 1367 aa22.83■■□□□ 1.24
PTPN21-208ENST00000556564 MRC2Q9UBG0 1479 aa22.82■■□□□ 1.24
PTPN21-208ENST00000556564 ROCK2O75116 1388 aaKnown RBP22.81■■□□□ 1.24
PTPN21-208ENST00000556564 RSPH4AQ5TD94 716 aa22.8■■□□□ 1.24
PTPN21-208ENST00000556564 NPHP1O15259 732 aa22.79■■□□□ 1.24
PTPN21-208ENST00000556564 MORC1Q86VD1 984 aa22.78■■□□□ 1.24
PTPN21-208ENST00000556564 HDGFL2Q7Z4V5 671 aaPredicted RBP22.76■■□□□ 1.23
PTPN21-208ENST00000556564 HSPA5P11021 654 aaKnown RBP22.76■■□□□ 1.23
PTPN21-208ENST00000556564 GRIN2BQ13224 1484 aa22.73■■□□□ 1.23
PTPN21-208ENST00000556564 FTSJ3Q8IY81 847 aaKnown RBP22.71■■□□□ 1.23
PTPN21-208ENST00000556564 CFTRP13569 1480 aa22.69■■□□□ 1.22
PTPN21-208ENST00000556564 CSB-PGBD3P0DP91 1061 aa22.68■■□□□ 1.22
PTPN21-208ENST00000556564 NUTM2FA1L443 756 aa22.68■■□□□ 1.22
PTPN21-208ENST00000556564 PNNQ9H307 717 aaKnown RBP22.67■■□□□ 1.22
PTPN21-208ENST00000556564 DNAJC5BQ9UF47 199 aa22.65■■□□□ 1.22
PTPN21-208ENST00000556564 HMGXB3Q12766 1538 aa22.65■■□□□ 1.22
PTPN21-208ENST00000556564 IFT140Q96RY7 1462 aa22.65■■□□□ 1.22
PTPN21-208ENST00000556564 CCDC9Q9Y3X0 531 aaKnown RBP22.64■■□□□ 1.22
PTPN21-208ENST00000556564 FRAT1Q92837 279 aaPredicted RBP22.64■■□□□ 1.21
PTPN21-208ENST00000556564 AEBP2Q6ZN18 517 aaPredicted RBP22.63■■□□□ 1.21
PTPN21-208ENST00000556564 EIF3AQ14152 1382 aaKnown RBP22.62■■□□□ 1.21
PTPN21-208ENST00000556564 TIMELESSQ9UNS1 1208 aa22.62■■□□□ 1.21
PTPN21-208ENST00000556564 PRG4Q92954 1404 aaPredicted RBP22.61■■□□□ 1.21
PTPN21-208ENST00000556564 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
PTPN21-208ENST00000556564 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
PTPN21-208ENST00000556564 NGDNQ8NEJ9 315 aaKnown RBP22.59■■□□□ 1.21
PTPN21-208ENST00000556564 TRAK1Q9UPV9 953 aa22.59■■□□□ 1.21
PTPN21-208ENST00000556564 SNAPC4Q5SXM2 1469 aa22.58■■□□□ 1.2
PTPN21-208ENST00000556564 RTF1Q92541 710 aaKnown RBP22.57■■□□□ 1.2
PTPN21-208ENST00000556564 L3MBTL2Q969R5 705 aa22.57■■□□□ 1.2
PTPN21-208ENST00000556564 CCDC144AA2RUR9 1427 aa22.54■■□□□ 1.2
PTPN21-208ENST00000556564 KTN1Q86UP2 1357 aaKnown RBP22.54■■□□□ 1.2
PTPN21-208ENST00000556564 BICRAQ9NZM4 1560 aa22.54■■□□□ 1.2
PTPN21-208ENST00000556564 ZNF644Q9H582 1327 aaPredicted RBP22.53■■□□□ 1.2
PTPN21-208ENST00000556564 SUPT16HQ9Y5B9 1047 aaKnown RBP22.52■■□□□ 1.2
PTPN21-208ENST00000556564 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.51■■□□□ 1.19
PTPN21-208ENST00000556564 OS9Q13438 667 aaPredicted RBP22.5■■□□□ 1.19
PTPN21-208ENST00000556564 CUX1P39880 1505 aa22.5■■□□□ 1.19
PTPN21-208ENST00000556564 POLA1P09884 1462 aaPredicted RBP22.5■■□□□ 1.19
PTPN21-208ENST00000556564 ARHGAP5Q13017 1502 aa22.5■■□□□ 1.19
PTPN21-208ENST00000556564 TERF2IPQ9NYB0 399 aa22.48■■□□□ 1.19
PTPN21-208ENST00000556564 U2AF1L5P0DN76 240 aaPredicted RBP22.47■■□□□ 1.19
PTPN21-208ENST00000556564 U2AF1Q01081 240 aaKnown RBP eCLIP22.47■■□□□ 1.19
PTPN21-208ENST00000556564 ZNF330Q9Y3S2 320 aaPredicted RBP22.47■■□□□ 1.19
PTPN21-208ENST00000556564 LTV1Q96GA3 475 aaPredicted RBP22.45■■□□□ 1.18
PTPN21-208ENST00000556564 DNMBPQ6XZF7 1577 aa22.45■■□□□ 1.18
PTPN21-208ENST00000556564 SYNJ2O15056 1496 aa22.44■■□□□ 1.18
PTPN21-208ENST00000556564 UACAQ9BZF9 1416 aa22.43■■□□□ 1.18
PTPN21-208ENST00000556564 VGFO15240 615 aaPredicted RBP22.42■■□□□ 1.18
PTPN21-208ENST00000556564 MYOM3Q5VTT5 1437 aa22.42■■□□□ 1.18
PTPN21-208ENST00000556564 KIF21BO75037 1637 aa22.41■■□□□ 1.18
PTPN21-208ENST00000556564 TOP2BQ02880 1626 aa22.41■■□□□ 1.18
PTPN21-208ENST00000556564 AMPHP49418 695 aa22.4■■□□□ 1.18
PTPN21-208ENST00000556564 CASC1Q6TDU7 716 aa22.4■■□□□ 1.18
PTPN21-208ENST00000556564 GOLGA2Q08379 1002 aa22.38■■□□□ 1.17
PTPN21-208ENST00000556564 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
PTPN21-208ENST00000556564 KIF15Q9NS87 1388 aa22.37■■□□□ 1.17
PTPN21-208ENST00000556564 MINK1Q8N4C8 1332 aaPredicted RBP22.37■■□□□ 1.17
PTPN21-208ENST00000556564 AFAP1Q8N556 730 aa22.36■■□□□ 1.17
PTPN21-208ENST00000556564 ANP32BQ92688 251 aaKnown RBP22.36■■□□□ 1.17
PTPN21-208ENST00000556564 CASKIN1Q8WXD9 1431 aa22.35■■□□□ 1.17
PTPN21-208ENST00000556564 FGD6Q6ZV73 1430 aa22.34■■□□□ 1.17
PTPN21-208ENST00000556564 TAOK2Q9UL54 1235 aa22.33■■□□□ 1.17
PTPN21-208ENST00000556564 UNC13AQ9UPW8 1703 aa22.33■■□□□ 1.16
PTPN21-208ENST00000556564 MS4A1P11836 297 aa22.33■■□□□ 1.16
PTPN21-208ENST00000556564 NCOA2Q15596 1464 aa22.33■■□□□ 1.16
PTPN21-208ENST00000556564 LRRC9Q6ZRR7 1453 aa22.32■■□□□ 1.16
PTPN21-208ENST00000556564 RALBP1Q15311 655 aa22.32■■□□□ 1.16
PTPN21-208ENST00000556564 RGS3P49796 1198 aa22.31■■□□□ 1.16
PTPN21-208ENST00000556564 CHMP4BQ9H444 224 aaKnown RBP22.31■■□□□ 1.16
PTPN21-208ENST00000556564 ST20-MTHFSA0A0A6YYL1 179 aa22.31■■□□□ 1.16
PTPN21-208ENST00000556564 ERICH3Q5RHP9 1530 aa22.3■■□□□ 1.16
PTPN21-208ENST00000556564 CCDC146Q8IYE0 955 aa22.3■■□□□ 1.16
PTPN21-208ENST00000556564 PHLDB1Q86UU1 1377 aa22.29■■□□□ 1.16
PTPN21-208ENST00000556564 FYCO1Q9BQS8 1478 aa22.29■■□□□ 1.16
PTPN21-208ENST00000556564 EVA1CP58658 441 aa22.27■■□□□ 1.16
PTPN21-208ENST00000556564 EVC2Q86UK5 1308 aa22.27■■□□□ 1.16
PTPN21-208ENST00000556564 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.27■■□□□ 1.16
PTPN21-208ENST00000556564 NBR1Q14596 966 aa22.25■■□□□ 1.15
PTPN21-208ENST00000556564 DHX57Q6P158 1386 aaKnown RBP22.24■■□□□ 1.15
PTPN21-208ENST00000556564 CALD1Q05682 793 aaKnown RBP22.24■■□□□ 1.15
PTPN21-208ENST00000556564 MEX3CQ5U5Q3 659 aaKnown RBP22.24■■□□□ 1.15
PTPN21-208ENST00000556564 PANK3Q9H999 370 aa22.24■■□□□ 1.15
PTPN21-208ENST00000556564 COG3Q96JB2 828 aa22.23■■□□□ 1.15
PTPN21-208ENST00000556564 CCER2I3L3R5 266 aa22.23■■□□□ 1.15
PTPN21-208ENST00000556564 TPRNQ4KMQ1 711 aa22.23■■□□□ 1.15
PTPN21-208ENST00000556564 APBB1O00213 710 aa22.22■■□□□ 1.15
PTPN21-208ENST00000556564 ARAP1Q96P48 1450 aa22.22■■□□□ 1.15
PTPN21-208ENST00000556564 PSME1Q06323 249 aa22.21■■□□□ 1.15
PTPN21-208ENST00000556564 BECN1Q14457 450 aa22.21■■□□□ 1.15
PTPN21-208ENST00000556564 ANKRD50Q9ULJ7 1429 aa22.2■■□□□ 1.15
PTPN21-208ENST00000556564 EFCAB5A4FU69 1503 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms