RNA–Protein interactions for RNA: ENST00000555616.5

ACTN1-215, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 919 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-215ENST00000555616 ARHGAP5Q13017 1502 aa15.43■□□□□ 0.06
ACTN1-215ENST00000555616 SCAPERQ9BY12 1400 aa15.42■□□□□ 0.06
ACTN1-215ENST00000555616 MAGI2Q86UL8 1455 aa15.41■□□□□ 0.06
ACTN1-215ENST00000555616 EFCAB2Q5VUJ9 269 aa15.41■□□□□ 0.06
ACTN1-215ENST00000555616 ZFYVE16Q7Z3T8 1539 aa15.4■□□□□ 0.06
ACTN1-215ENST00000555616 CDC42BPBQ9Y5S2 1711 aa15.4■□□□□ 0.06
ACTN1-215ENST00000555616 ABCC1P33527 1531 aa15.38■□□□□ 0.05
ACTN1-215ENST00000555616 EHBP1L1Q8N3D4 1523 aa15.38■□□□□ 0.05
ACTN1-215ENST00000555616 KDM5CP41229 1560 aa15.38■□□□□ 0.05
ACTN1-215ENST00000555616 LOC105371045A0A1W2PR82 267 aa15.38■□□□□ 0.05
ACTN1-215ENST00000555616 ZNF518AQ6AHZ1 1483 aa15.38■□□□□ 0.05
ACTN1-215ENST00000555616 CDC42BPAQ5VT25 1732 aa15.37■□□□□ 0.05
ACTN1-215ENST00000555616 VPS8Q8N3P4 1428 aa15.37■□□□□ 0.05
ACTN1-215ENST00000555616 YEATS2Q9ULM3 1422 aa15.36■□□□□ 0.05
ACTN1-215ENST00000555616 MTUS2Q5JR59 1369 aa15.36■□□□□ 0.05
ACTN1-215ENST00000555616 GPATCH8Q9UKJ3 1502 aaKnown RBP15.35■□□□□ 0.05
ACTN1-215ENST00000555616 ADAMTSL3P82987 1691 aa15.35■□□□□ 0.05
ACTN1-215ENST00000555616 ARHGEF12Q9NZN5 1544 aa15.33■□□□□ 0.05
ACTN1-215ENST00000555616 TIAM1Q13009 1591 aa15.33■□□□□ 0.05
ACTN1-215ENST00000555616 ITSN2Q9NZM3 1697 aa15.33■□□□□ 0.04
ACTN1-215ENST00000555616 BCORL1Q5H9F3 1711 aa15.33■□□□□ 0.04
ACTN1-215ENST00000555616 SAMD9LQ8IVG5 1584 aa15.32■□□□□ 0.04
ACTN1-215ENST00000555616 HECW2Q9P2P5 1572 aa15.32■□□□□ 0.04
ACTN1-215ENST00000555616 SIGLEC1Q9BZZ2 1709 aa15.31■□□□□ 0.04
ACTN1-215ENST00000555616 CCNB3Q8WWL7 1395 aa15.3■□□□□ 0.04
ACTN1-215ENST00000555616 MLH3Q9UHC1 1453 aa15.3■□□□□ 0.04
ACTN1-215ENST00000555616 TRAPPC8Q9Y2L5 1435 aa15.3■□□□□ 0.04
ACTN1-215ENST00000555616 SYCP2Q9BX26 1530 aa15.29■□□□□ 0.04
ACTN1-215ENST00000555616 ATP10AO60312 1499 aa15.29■□□□□ 0.04
ACTN1-215ENST00000555616 C9orf84Q5VXU9 1444 aa15.29■□□□□ 0.04
ACTN1-215ENST00000555616 MADDQ8WXG6 1647 aa15.28■□□□□ 0.04
ACTN1-215ENST00000555616 REREQ9P2R6 1566 aa15.28■□□□□ 0.04
ACTN1-215ENST00000555616 DIP2CQ9Y2E4 1556 aa15.28■□□□□ 0.04
ACTN1-215ENST00000555616 MAP3K1Q13233 1512 aa15.28■□□□□ 0.04
ACTN1-215ENST00000555616 PLEKHH2Q8IVE3 1493 aa15.28■□□□□ 0.04
ACTN1-215ENST00000555616 KIAA1107Q9UPP5 1409 aa15.27■□□□□ 0.04
ACTN1-215ENST00000555616 AFAP1Q8N556 730 aa15.27■□□□□ 0.04
ACTN1-215ENST00000555616 ABCA6Q8N139 1617 aa15.27■□□□□ 0.03
ACTN1-215ENST00000555616 PTPRMP28827 1452 aa15.27■□□□□ 0.03
ACTN1-215ENST00000555616 SUPT6HQ7KZ85 1726 aaKnown RBP15.26■□□□□ 0.03
ACTN1-215ENST00000555616 ARID4BQ4LE39 1312 aaPredicted RBP15.26■□□□□ 0.03
ACTN1-215ENST00000555616 NCOA2Q15596 1464 aa15.26■□□□□ 0.03
ACTN1-215ENST00000555616 LRRC9Q6ZRR7 1453 aa15.25■□□□□ 0.03
ACTN1-215ENST00000555616 CFDP1Q9UEE9 299 aaPredicted RBP15.24■□□□□ 0.03
ACTN1-215ENST00000555616 KIDINS220Q9ULH0 1771 aa15.23■□□□□ 0.03
ACTN1-215ENST00000555616 INO80Q9ULG1 1556 aaPredicted RBP15.23■□□□□ 0.03
ACTN1-215ENST00000555616 ZNF777Q9ULD5 760 aaPredicted RBP15.22■□□□□ 0.03
ACTN1-215ENST00000555616 AGLP35573 1532 aa15.22■□□□□ 0.03
ACTN1-215ENST00000555616 RIMS1Q86UR5 1692 aaKnown RBP15.21■□□□□ 0.03
ACTN1-215ENST00000555616 ATP7AQ04656 1500 aa15.2■□□□□ 0.02
ACTN1-215ENST00000555616 MBD5Q9P267 1494 aa15.2■□□□□ 0.02
ACTN1-215ENST00000555616 CAMSAP2Q08AD1 1489 aa15.18■□□□□ 0.02
ACTN1-215ENST00000555616 FER1L4A9Z1Z3 1794 aa15.18■□□□□ 0.02
ACTN1-215ENST00000555616 HNRNPMP52272 730 aaKnown RBP eCLIP15.17■□□□□ 0.021e-6■■■■□ 24.2
ACTN1-215ENST00000555616 ILDR1Q86SU0 546 aaPredicted RBP15.17■□□□□ 0.02
ACTN1-215ENST00000555616 SPAG9O60271 1321 aaKnown RBP15.17■□□□□ 0.02
ACTN1-215ENST00000555616 ZNF644Q9H582 1327 aaPredicted RBP15.17■□□□□ 0.02
ACTN1-215ENST00000555616 PLXNC1O60486 1568 aa15.16■□□□□ 0.02
ACTN1-215ENST00000555616 MYT1LQ9UL68 1186 aa15.15■□□□□ 0.02
ACTN1-215ENST00000555616 CCDC141Q6ZP82 1450 aa15.14■□□□□ 0.01
ACTN1-215ENST00000555616 KANK4Q5T7N3 995 aaPredicted RBP15.14■□□□□ 0.01
ACTN1-215ENST00000555616 ARHGEF5Q12774 1597 aa15.13■□□□□ 0.01
ACTN1-215ENST00000555616 MLECQ14165 292 aa15.13■□□□□ 0.01
ACTN1-215ENST00000555616 RTEL1-TNFRSF6BF6WH68 1400 aa15.12■□□□□ 0.01
ACTN1-215ENST00000555616 MYOM3Q5VTT5 1437 aa15.12■□□□□ 0.01
ACTN1-215ENST00000555616 A2MP01023 1474 aa15.12■□□□□ 0.01
ACTN1-215ENST00000555616 MIA2Q96PC5 1412 aa15.11■□□□□ 0.01
ACTN1-215ENST00000555616 LMTK3Q96Q04 1460 aa15.11■□□□□ 0.01
ACTN1-215ENST00000555616 ADGBQ8N7X0 1667 aa15.1■□□□□ 0.01
ACTN1-215ENST00000555616 APLP2Q06481 763 aa15.07■□□□□ 0
ACTN1-215ENST00000555616 RSPH4AQ5TD94 716 aa15.07■□□□□ 0
ACTN1-215ENST00000555616 CNTLNQ9NXG0 1405 aa15.07■□□□□ 0
ACTN1-215ENST00000555616 MAST1Q9Y2H9 1570 aa15.07■□□□□ 0
ACTN1-215ENST00000555616 MROH2AA6NES4 1674 aa15.04■□□□□ -0
ACTN1-215ENST00000555616 C3P01024 1663 aa15.03■□□□□ -0
ACTN1-215ENST00000555616 PREX1Q8TCU6 1659 aa15.03■□□□□ -0
ACTN1-215ENST00000555616 FGD6Q6ZV73 1430 aa15.02■□□□□ -0
ACTN1-215ENST00000555616 DHX29Q7Z478 1369 aaKnown RBP15.02■□□□□ -0
ACTN1-215ENST00000555616 PTPN23Q9H3S7 1636 aa15.02□□□□□ -0.01
ACTN1-215ENST00000555616 TCOF1Q13428 1488 aaKnown RBP15.01□□□□□ -0.01
ACTN1-215ENST00000555616 FAM135AQ9P2D6 1515 aa15.01□□□□□ -0.01
ACTN1-215ENST00000555616 SHANK2Q9UPX8 1470 aa15.01□□□□□ -0.01
ACTN1-215ENST00000555616 CEBPAP49715 358 aaPredicted RBP15□□□□□ -0.01
ACTN1-215ENST00000555616 PLPPR3Q6T4P5 718 aa14.99□□□□□ -0.01
ACTN1-215ENST00000555616 ESF1Q9H501 851 aaKnown RBP14.99□□□□□ -0.01
ACTN1-215ENST00000555616 CROCC2H7BZ55 1655 aa14.99□□□□□ -0.01
ACTN1-215ENST00000555616 NPATQ14207 1427 aa14.99□□□□□ -0.01
ACTN1-215ENST00000555616 TSPY4P0CV99 314 aa14.98□□□□□ -0.01
ACTN1-215ENST00000555616 TSPY10P0CW01 314 aa14.98□□□□□ -0.01
ACTN1-215ENST00000555616 DNMT1P26358 1616 aaKnown RBP14.98□□□□□ -0.01
ACTN1-215ENST00000555616 CLTCQ00610 1675 aaKnown RBP14.97□□□□□ -0.01
ACTN1-215ENST00000555616 FBXO41Q8TF61 875 aa14.97□□□□□ -0.01
ACTN1-215ENST00000555616 PPP6R1Q9UPN7 881 aa14.97□□□□□ -0.01
ACTN1-215ENST00000555616 ABCC5O15440 1437 aa14.97□□□□□ -0.01
ACTN1-215ENST00000555616 UHRF1BP1Q6BDS2 1440 aa14.97□□□□□ -0.01
ACTN1-215ENST00000555616 EIF2AK4Q9P2K8 1649 aaKnown RBP14.96□□□□□ -0.01
ACTN1-215ENST00000555616 KDM5DQ9BY66 1539 aa14.96□□□□□ -0.02
ACTN1-215ENST00000555616 RNF17Q9BXT8 1623 aaKnown RBP14.95□□□□□ -0.02
ACTN1-215ENST00000555616 DAPK1P53355 1430 aa14.95□□□□□ -0.02
ACTN1-215ENST00000555616 ZMYM3Q14202 1370 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms