RNA–Protein interactions for RNA: ENST00000555616.5

ACTN1-215, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 919 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-215ENST00000555616 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.08□□□□□ -0.965e-8■■■■■ 204.6
ACTN1-215ENST00000555616 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.17□□□□□ -0.782e-13■■■■■ 158.6
ACTN1-215ENST00000555616 SF3B1O75533 1304 aaKnown RBP eCLIP10.51□□□□□ -0.734e-6■■■■■ 130.8
ACTN1-215ENST00000555616 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.62□□□□□ -0.874e-7■■■■■ 58.1
ACTN1-215ENST00000555616 DKC1O60832 514 aaKnown RBP eCLIP10.75□□□□□ -0.691e-7■■■■■ 54.2
ACTN1-215ENST00000555616 EWSR1Q01844 656 aaKnown RBP eCLIP7.45□□□□□ -1.221e-13■■■■■ 50.4
ACTN1-215ENST00000555616 SF3B4Q15427 424 aaKnown RBP eCLIP8.71□□□□□ -1.021e-25■■■■■ 49.5
ACTN1-215ENST00000555616 EIF4G2P78344 907 aaKnown RBP eCLIP13.37□□□□□ -0.276e-7■■■■■ 48.9
ACTN1-215ENST00000555616 AQRO60306 1485 aaKnown RBP eCLIP17.04■□□□□ 0.323e-10■■■■■ 47.9
ACTN1-215ENST00000555616 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.61□□□□□ -0.555e-6■■■■■ 34.6
ACTN1-215ENST00000555616 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.38□□□□□ -0.759e-7■■■■■ 31.9
ACTN1-215ENST00000555616 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.64□□□□□ -0.556e-7■■■■■ 31.5
ACTN1-215ENST00000555616 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.46□□□□□ -0.91e-6■■■■■ 31.4
ACTN1-215ENST00000555616 PTBP1P26599 531 aaKnown RBP eCLIP8□□□□□ -1.131e-7■■■■■ 30.8
ACTN1-215ENST00000555616 SRSF7Q16629 238 aaKnown RBP eCLIP7.88□□□□□ -1.153e-14■■■■□ 24.7
ACTN1-215ENST00000555616 YBX3P16989 372 aaKnown RBP eCLIP12.67□□□□□ -0.383e-6■■■■□ 24.3
ACTN1-215ENST00000555616 HNRNPMP52272 730 aaKnown RBP eCLIP15.17■□□□□ 0.021e-6■■■■□ 24.2
ACTN1-215ENST00000555616 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.51□□□□□ -0.895e-7■■■■□ 24
ACTN1-215ENST00000555616 MATR3P43243 847 aaKnown RBP eCLIP10.44□□□□□ -0.741e-6■■■■□ 23.1
ACTN1-215ENST00000555616 EFTUD2Q15029 972 aaKnown RBP eCLIP9.43□□□□□ -0.93e-6■■■■□ 22
ACTN1-215ENST00000555616 SF3A3Q12874 501 aaKnown RBP eCLIP9.08□□□□□ -0.966e-36■■■■□ 21.7
ACTN1-215ENST00000555616 SFPQP23246 707 aaKnown RBP eCLIP10.7□□□□□ -0.77e-7■■■■□ 21
ACTN1-215ENST00000555616 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.45□□□□□ -0.262e-7■■■■□ 20.7
ACTN1-215ENST00000555616 FXR2P51116 673 aaKnown RBP eCLIP10.69□□□□□ -0.72e-8■■■□□ 18.9
ACTN1-215ENST00000555616 TIAL1Q01085 375 aaKnown RBP eCLIP9.31□□□□□ -0.924e-6■■■□□ 18.3
ACTN1-215ENST00000555616 FMR1Q06787 632 aaKnown RBP eCLIP12.03□□□□□ -0.487e-6■■■□□ 17.4
ACTN1-215ENST00000555616 PUM1Q14671 1186 aaKnown RBP eCLIP9.93□□□□□ -0.825e-6■■■□□ 17
ACTN1-215ENST00000555616 PCBP2Q15366 365 aaKnown RBP eCLIP9.21□□□□□ -0.942e-6■■■□□ 15.9
ACTN1-215ENST00000555616 PRPF4O43172 522 aaKnown RBP eCLIP9.31□□□□□ -0.929e-7■■■□□ 15.8
ACTN1-215ENST00000555616 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.66□□□□□ -0.862e-6■■■□□ 15.7
ACTN1-215ENST00000555616 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.99□□□□□ -0.658e-7■■■□□ 15.4
ACTN1-215ENST00000555616 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.08□□□□□ -0.327e-7■■■□□ 15.2
ACTN1-215ENST00000555616 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.15□□□□□ -1.18e-7■■■□□ 14.9
ACTN1-215ENST00000555616 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.24□□□□□ -0.774e-9■■□□□ 14.3
ACTN1-215ENST00000555616 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.97□□□□□ -0.972e-6■■□□□ 14.2
ACTN1-215ENST00000555616 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.9□□□□□ -0.984e-6■■□□□ 13.3
ACTN1-215ENST00000555616 RBM22Q9NW64 420 aaKnown RBP eCLIP9.65□□□□□ -0.863e-6■■□□□ 13.2
ACTN1-215ENST00000555616 HNRNPUQ00839 825 aaKnown RBP eCLIP12.55□□□□□ -0.43e-7■■□□□ 13
ACTN1-215ENST00000555616 RBFOX2O43251 390 aaKnown RBP eCLIP7.67□□□□□ -1.189e-7■■□□□ 12.5
ACTN1-215ENST00000555616 HNRNPLP14866 589 aaKnown RBP eCLIP10□□□□□ -0.816e-6■■□□□ 12.3
ACTN1-215ENST00000555616 G3BP1Q13283 466 aaKnown RBP eCLIP11.84□□□□□ -0.512e-8■■□□□ 12
ACTN1-215ENST00000555616 NKRFO15226 690 aaKnown RBP eCLIP11.11□□□□□ -0.636e-6■■□□□ 11.7
ACTN1-215ENST00000555616 PPIGQ13427 754 aaKnown RBP eCLIP11.02□□□□□ -0.651e-11■□□□□ 11.3
ACTN1-215ENST00000555616 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.061e-6■□□□□ 10.8
ACTN1-215ENST00000555616 RPS3P23396 243 aaKnown RBP eCLIP9.38□□□□□ -0.912e-6■□□□□ 10.5
ACTN1-215ENST00000555616 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.94□□□□□ -0.981e-7■□□□□ 10.1
ACTN1-215ENST00000555616 NOLC1Q14978 699 aaKnown RBP eCLIP10.5□□□□□ -0.738e-10■□□□□ 9.7
ACTN1-215ENST00000555616 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.82□□□□□ -0.686e-6■□□□□ 8.2
Retrieved 48 of 48 RNA–protein pairs in 11.6 ms