RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ARID4BQ4LE39 1312 aaPredicted RBP19.87■□□□□ 0.77
CUX1-214ENST00000550008 ROCK2O75116 1388 aaKnown RBP19.86■□□□□ 0.77
CUX1-214ENST00000550008 CDCA8Q53HL2 280 aa19.86■□□□□ 0.77
CUX1-214ENST00000550008 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.85■□□□□ 0.77
CUX1-214ENST00000550008 ST20-MTHFSA0A0A6YYL1 179 aa19.85■□□□□ 0.77
CUX1-214ENST00000550008 PTPRGP23470 1445 aa19.85■□□□□ 0.77
CUX1-214ENST00000550008 MYOM3Q5VTT5 1437 aa19.84■□□□□ 0.77
CUX1-214ENST00000550008 UNC13AQ9UPW8 1703 aa19.84■□□□□ 0.77
CUX1-214ENST00000550008 RRBP1Q9P2E9 1410 aaKnown RBP19.83■□□□□ 0.76
CUX1-214ENST00000550008 CASKIN1Q8WXD9 1431 aa19.83■□□□□ 0.76
CUX1-214ENST00000550008 NUTM2DQ5VT03 806 aaPredicted RBP19.82■□□□□ 0.76
CUX1-214ENST00000550008 PPP4R2Q9NY27 417 aa19.82■□□□□ 0.76
CUX1-214ENST00000550008 NCOA2Q15596 1464 aa19.82■□□□□ 0.76
CUX1-214ENST00000550008 STK26Q9P289 416 aa19.81■□□□□ 0.76
CUX1-214ENST00000550008 POGKQ9P215 609 aa19.8■□□□□ 0.76
CUX1-214ENST00000550008 SPAG9O60271 1321 aaKnown RBP19.78■□□□□ 0.76
CUX1-214ENST00000550008 KANK1Q14678 1352 aa19.76■□□□□ 0.75
CUX1-214ENST00000550008 ZBTB7CA1YPR0 619 aa19.74■□□□□ 0.75
CUX1-214ENST00000550008 C14orf37Q86TY3 774 aa19.74■□□□□ 0.75
CUX1-214ENST00000550008 FRAT1Q92837 279 aaPredicted RBP19.74■□□□□ 0.75
CUX1-214ENST00000550008 U2SURPO15042 1029 aaKnown RBP19.73■□□□□ 0.75
CUX1-214ENST00000550008 PRKRIP1Q9H875 184 aaPredicted RBP19.73■□□□□ 0.75
CUX1-214ENST00000550008 CFAP53Q96M91 514 aa19.72■□□□□ 0.75
CUX1-214ENST00000550008 UACAQ9BZF9 1416 aa19.72■□□□□ 0.75
CUX1-214ENST00000550008 RGS3P49796 1198 aa19.71■□□□□ 0.75
CUX1-214ENST00000550008 SRPK2P78362 688 aaKnown RBP19.7■□□□□ 0.74
CUX1-214ENST00000550008 GRIN2BQ13224 1484 aa19.7■□□□□ 0.74
CUX1-214ENST00000550008 LAS1LQ9Y4W2 734 aaKnown RBP19.7■□□□□ 0.74
CUX1-214ENST00000550008 PEG3Q9GZU2 1588 aa19.69■□□□□ 0.74
CUX1-214ENST00000550008 FYCO1Q9BQS8 1478 aa19.68■□□□□ 0.74
CUX1-214ENST00000550008 KTN1Q86UP2 1357 aaKnown RBP19.68■□□□□ 0.74
CUX1-214ENST00000550008 PRDM2Q13029 1718 aa19.68■□□□□ 0.74
CUX1-214ENST00000550008 SOX12O15370 315 aa19.68■□□□□ 0.74
CUX1-214ENST00000550008 RSPH4AQ5TD94 716 aa19.67■□□□□ 0.74
CUX1-214ENST00000550008 RBM19Q9Y4C8 960 aaKnown RBP19.67■□□□□ 0.74
CUX1-214ENST00000550008 USP47Q96K76 1375 aa19.66■□□□□ 0.74
CUX1-214ENST00000550008 TIAM1Q13009 1591 aa19.66■□□□□ 0.74
CUX1-214ENST00000550008 MORC1Q86VD1 984 aa19.65■□□□□ 0.74
CUX1-214ENST00000550008 UPF2Q9HAU5 1272 aaKnown RBP19.65■□□□□ 0.74
CUX1-214ENST00000550008 TSHZ2Q9NRE2 1034 aa19.65■□□□□ 0.74
CUX1-214ENST00000550008 PRG4Q92954 1404 aaPredicted RBP19.65■□□□□ 0.74
CUX1-214ENST00000550008 WASHC2AQ641Q2 1341 aa19.64■□□□□ 0.73
CUX1-214ENST00000550008 CCDC144AA2RUR9 1427 aa19.64■□□□□ 0.73
CUX1-214ENST00000550008 TRAK1Q9UPV9 953 aa19.63■□□□□ 0.73
CUX1-214ENST00000550008 ARXQ96QS3 562 aa19.62■□□□□ 0.73
CUX1-214ENST00000550008 KIF15Q9NS87 1388 aa19.62■□□□□ 0.73
CUX1-214ENST00000550008 DNMBPQ6XZF7 1577 aa19.62■□□□□ 0.73
CUX1-214ENST00000550008 PANK3Q9H999 370 aa19.62■□□□□ 0.73
CUX1-214ENST00000550008 NBPF8Q3BBV2 869 aa19.62■□□□□ 0.73
CUX1-214ENST00000550008 KIF7Q2M1P5 1343 aa19.61■□□□□ 0.73
CUX1-214ENST00000550008 HSP90AA1P07900 732 aaKnown RBP19.61■□□□□ 0.73
CUX1-214ENST00000550008 CCDC146Q8IYE0 955 aa19.61■□□□□ 0.73
CUX1-214ENST00000550008 AFAP1Q8N556 730 aa19.61■□□□□ 0.73
CUX1-214ENST00000550008 WASHC2CQ9Y4E1 1318 aa19.6■□□□□ 0.73
CUX1-214ENST00000550008 RALBP1Q15311 655 aa19.6■□□□□ 0.73
CUX1-214ENST00000550008 ABCA10Q8WWZ4 1543 aa19.59■□□□□ 0.73
CUX1-214ENST00000550008 MAPK8IP3Q9UPT6 1336 aa19.59■□□□□ 0.73
CUX1-214ENST00000550008 ANKRD50Q9ULJ7 1429 aa19.59■□□□□ 0.73
CUX1-214ENST00000550008 CYB5RLQ6IPT4 315 aa19.59■□□□□ 0.73
CUX1-214ENST00000550008 RCAN3Q9UKA8 241 aa19.59■□□□□ 0.73
CUX1-214ENST00000550008 MRC2Q9UBG0 1479 aa19.58■□□□□ 0.73
CUX1-214ENST00000550008 NLRP13Q86W25 1043 aa19.58■□□□□ 0.72
CUX1-214ENST00000550008 CDK13Q14004 1512 aaKnown RBP19.58■□□□□ 0.72
CUX1-214ENST00000550008 SNAPC4Q5SXM2 1469 aa19.56■□□□□ 0.72
CUX1-214ENST00000550008 FTSJ3Q8IY81 847 aaKnown RBP19.56■□□□□ 0.72
CUX1-214ENST00000550008 NUDCQ9Y266 331 aa19.56■□□□□ 0.72
CUX1-214ENST00000550008 ANP32EQ9BTT0 268 aa19.55■□□□□ 0.72
CUX1-214ENST00000550008 CCDC7Q96M83 1385 aa19.54■□□□□ 0.72
CUX1-214ENST00000550008 PCF11O94913 1555 aaKnown RBP19.54■□□□□ 0.72
CUX1-214ENST00000550008 EFCAB5A4FU69 1503 aa19.53■□□□□ 0.72
CUX1-214ENST00000550008 TRHP20396 242 aaPredicted RBP19.53■□□□□ 0.72
CUX1-214ENST00000550008 U2AF1L5P0DN76 240 aaPredicted RBP19.52■□□□□ 0.72
CUX1-214ENST00000550008 U2AF1Q01081 240 aaKnown RBP eCLIP19.52■□□□□ 0.725e-6■□□□□ 11.2
CUX1-214ENST00000550008 URB2Q14146 1524 aaKnown RBP19.52■□□□□ 0.72
CUX1-214ENST00000550008 LMOD2Q6P5Q4 547 aa19.52■□□□□ 0.72
CUX1-214ENST00000550008 WDR97A6NE52 1622 aa19.52■□□□□ 0.71
CUX1-214ENST00000550008 HFM1A2PYH4 1435 aa19.51■□□□□ 0.71
CUX1-214ENST00000550008 CCDC184Q52MB2 194 aa19.5■□□□□ 0.71
CUX1-214ENST00000550008 NBPF1Q3BBV0 1214 aa19.5■□□□□ 0.71
CUX1-214ENST00000550008 NAIPQ13075 1403 aa19.5■□□□□ 0.71
CUX1-214ENST00000550008 PLIN1O60240 522 aa19.49■□□□□ 0.71
CUX1-214ENST00000550008 NUTM2FA1L443 756 aa19.48■□□□□ 0.71
CUX1-214ENST00000550008 IFT140Q96RY7 1462 aa19.48■□□□□ 0.71
CUX1-214ENST00000550008 RRP7AQ9Y3A4 280 aaKnown RBP19.47■□□□□ 0.71
CUX1-214ENST00000550008 MYBBP1AQ9BQG0 1328 aaKnown RBP19.47■□□□□ 0.71
CUX1-214ENST00000550008 EPRSP07814 1512 aaKnown RBP19.45■□□□□ 0.7
CUX1-214ENST00000550008 ZNF608Q9ULD9 1512 aaPredicted RBP19.45■□□□□ 0.7
CUX1-214ENST00000550008 OSCARQ8IYS5 282 aa19.45■□□□□ 0.7
CUX1-214ENST00000550008 MYH16Q9H6N6 1097 aa19.44■□□□□ 0.7
CUX1-214ENST00000550008 BIVM-ERCC5R4GMW8 1640 aa19.44■□□□□ 0.7
CUX1-214ENST00000550008 EIF5BO60841 1220 aaKnown RBP19.44■□□□□ 0.7
CUX1-214ENST00000550008 TROQ12816 1431 aaPredicted RBP19.43■□□□□ 0.7
CUX1-214ENST00000550008 PLB1Q6P1J6 1458 aa19.42■□□□□ 0.7
CUX1-214ENST00000550008 EHBP1L1Q8N3D4 1523 aa19.42■□□□□ 0.7
CUX1-214ENST00000550008 CLUAP1Q96AJ1 413 aa19.42■□□□□ 0.7
CUX1-214ENST00000550008 C11orf95C9JLR9 678 aaPredicted RBP19.4■□□□□ 0.7
CUX1-214ENST00000550008 ZBED9Q6R2W3 1325 aa19.4■□□□□ 0.7
CUX1-214ENST00000550008 A0A0G2JS52 829 aa19.4■□□□□ 0.7
CUX1-214ENST00000550008 NOP58Q9Y2X3 529 aaKnown RBP19.4■□□□□ 0.7
CUX1-214ENST00000550008 GOLGA2Q08379 1002 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms