RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SAFB2Q14151 953 aaKnown RBP eCLIP21.48■■□□□ 1.03
CUX1-213ENST00000549414 DNAJC5BQ9UF47 199 aa21.48■■□□□ 1.03
CUX1-213ENST00000549414 ERICH3Q5RHP9 1530 aa21.48■■□□□ 1.03
CUX1-213ENST00000549414 ROCK2O75116 1388 aaKnown RBP21.46■■□□□ 1.03
CUX1-213ENST00000549414 KIF3BO15066 747 aa21.42■■□□□ 1.02
CUX1-213ENST00000549414 UPF2Q9HAU5 1272 aaKnown RBP21.41■■□□□ 1.02
CUX1-213ENST00000549414 POGKQ9P215 609 aa21.41■■□□□ 1.02
CUX1-213ENST00000549414 CFAP53Q96M91 514 aa21.4■■□□□ 1.02
CUX1-213ENST00000549414 KANK1Q14678 1352 aa21.4■■□□□ 1.02
CUX1-213ENST00000549414 HMGXB3Q12766 1538 aa21.4■■□□□ 1.02
CUX1-213ENST00000549414 MYOM3Q5VTT5 1437 aa21.4■■□□□ 1.02
CUX1-213ENST00000549414 CC2D2AQ9P2K1 1620 aa21.39■■□□□ 1.01
CUX1-213ENST00000549414 ST20-MTHFSA0A0A6YYL1 179 aa21.39■■□□□ 1.01
CUX1-213ENST00000549414 POLA1P09884 1462 aaPredicted RBP21.37■■□□□ 1.01
CUX1-213ENST00000549414 CASKIN1Q8WXD9 1431 aa21.37■■□□□ 1.01
CUX1-213ENST00000549414 PTPRGP23470 1445 aa21.37■■□□□ 1.01
CUX1-213ENST00000549414 RRBP1Q9P2E9 1410 aaKnown RBP21.37■■□□□ 1.01
CUX1-213ENST00000549414 LMOD2Q6P5Q4 547 aa21.36■■□□□ 1.01
CUX1-213ENST00000549414 FRAT1Q92837 279 aaPredicted RBP21.35■■□□□ 1.01
CUX1-213ENST00000549414 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
CUX1-213ENST00000549414 STK26Q9P289 416 aa21.35■■□□□ 1.01
CUX1-213ENST00000549414 NCOA2Q15596 1464 aa21.35■■□□□ 1.01
CUX1-213ENST00000549414 HSP90AA1P07900 732 aaKnown RBP21.34■■□□□ 1.01
CUX1-213ENST00000549414 SPAG9O60271 1321 aaKnown RBP21.34■■□□□ 1.01
CUX1-213ENST00000549414 U2SURPO15042 1029 aaKnown RBP21.33■■□□□ 1.01
CUX1-213ENST00000549414 RGS3P49796 1198 aa21.33■■□□□ 1.01
CUX1-213ENST00000549414 KTN1Q86UP2 1357 aaKnown RBP21.32■■□□□ 1
CUX1-213ENST00000549414 NUTM2DQ5VT03 806 aaPredicted RBP21.31■■□□□ 1
CUX1-213ENST00000549414 LAS1LQ9Y4W2 734 aaKnown RBP21.31■■□□□ 1
CUX1-213ENST00000549414 PRKRIP1Q9H875 184 aaPredicted RBP21.3■■□□□ 1
CUX1-213ENST00000549414 RBM19Q9Y4C8 960 aaKnown RBP21.29■■□□□ 1
CUX1-213ENST00000549414 SRPK2P78362 688 aaKnown RBP21.29■■□□□ 1
CUX1-213ENST00000549414 UACAQ9BZF9 1416 aa21.28■■□□□ 1
CUX1-213ENST00000549414 RSPH4AQ5TD94 716 aa21.27■■□□□ 1
CUX1-213ENST00000549414 ARXQ96QS3 562 aa21.27■■□□□ 1
CUX1-213ENST00000549414 HAP1P54257 671 aaPredicted RBP21.26■□□□□ 0.99
CUX1-213ENST00000549414 MORC1Q86VD1 984 aa21.26■□□□□ 0.99
CUX1-213ENST00000549414 ANP32EQ9BTT0 268 aa21.25■□□□□ 0.99
CUX1-213ENST00000549414 TSHZ2Q9NRE2 1034 aa21.25■□□□□ 0.99
CUX1-213ENST00000549414 CYB5RLQ6IPT4 315 aa21.25■□□□□ 0.99
CUX1-213ENST00000549414 MAPK8IP3Q9UPT6 1336 aa21.25■□□□□ 0.99
CUX1-213ENST00000549414 FYCO1Q9BQS8 1478 aa21.24■□□□□ 0.99
CUX1-213ENST00000549414 UNC13AQ9UPW8 1703 aa21.23■□□□□ 0.99
CUX1-213ENST00000549414 RALBP1Q15311 655 aa21.23■□□□□ 0.99
CUX1-213ENST00000549414 USP47Q96K76 1375 aa21.23■□□□□ 0.99
CUX1-213ENST00000549414 FTSJ3Q8IY81 847 aaKnown RBP21.22■□□□□ 0.99
CUX1-213ENST00000549414 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
CUX1-213ENST00000549414 CCDC144AA2RUR9 1427 aa21.21■□□□□ 0.99
CUX1-213ENST00000549414 NUDCQ9Y266 331 aa21.21■□□□□ 0.99
CUX1-213ENST00000549414 GRIN2BQ13224 1484 aa21.21■□□□□ 0.99
CUX1-213ENST00000549414 SOX12O15370 315 aa21.21■□□□□ 0.99
CUX1-213ENST00000549414 RCAN3Q9UKA8 241 aa21.2■□□□□ 0.98
CUX1-213ENST00000549414 TIAM1Q13009 1591 aa21.19■□□□□ 0.98
CUX1-213ENST00000549414 NLRP13Q86W25 1043 aa21.18■□□□□ 0.98
CUX1-213ENST00000549414 PANK3Q9H999 370 aa21.17■□□□□ 0.98
CUX1-213ENST00000549414 WASHC2AQ641Q2 1341 aa21.16■□□□□ 0.98
CUX1-213ENST00000549414 CCDC146Q8IYE0 955 aa21.16■□□□□ 0.98
CUX1-213ENST00000549414 KIF15Q9NS87 1388 aa21.15■□□□□ 0.98
CUX1-213ENST00000549414 TRAK1Q9UPV9 953 aa21.15■□□□□ 0.98
CUX1-213ENST00000549414 MYH16Q9H6N6 1097 aa21.15■□□□□ 0.98
CUX1-213ENST00000549414 KIF7Q2M1P5 1343 aa21.15■□□□□ 0.98
CUX1-213ENST00000549414 PEG3Q9GZU2 1588 aa21.14■□□□□ 0.97
CUX1-213ENST00000549414 WASHC2CQ9Y4E1 1318 aa21.14■□□□□ 0.97
CUX1-213ENST00000549414 DNMBPQ6XZF7 1577 aa21.12■□□□□ 0.97
CUX1-213ENST00000549414 ANKRD50Q9ULJ7 1429 aa21.12■□□□□ 0.97
CUX1-213ENST00000549414 PRG4Q92954 1404 aaPredicted RBP21.11■□□□□ 0.97
CUX1-213ENST00000549414 U2AF1L5P0DN76 240 aaPredicted RBP21.1■□□□□ 0.97
CUX1-213ENST00000549414 U2AF1Q01081 240 aaKnown RBP eCLIP21.1■□□□□ 0.975e-6■□□□□ 11.2
CUX1-213ENST00000549414 CCDC7Q96M83 1385 aa21.1■□□□□ 0.97
CUX1-213ENST00000549414 EFCAB5A4FU69 1503 aa21.1■□□□□ 0.97
CUX1-213ENST00000549414 NBPF8Q3BBV2 869 aa21.09■□□□□ 0.97
CUX1-213ENST00000549414 NOP58Q9Y2X3 529 aaKnown RBP21.08■□□□□ 0.96
CUX1-213ENST00000549414 MRC2Q9UBG0 1479 aa21.07■□□□□ 0.96
CUX1-213ENST00000549414 ABCA10Q8WWZ4 1543 aa21.06■□□□□ 0.96
CUX1-213ENST00000549414 MYBBP1AQ9BQG0 1328 aaKnown RBP21.06■□□□□ 0.96
CUX1-213ENST00000549414 DDRGK1Q96HY6 314 aa21.06■□□□□ 0.96
CUX1-213ENST00000549414 AFAP1Q8N556 730 aa21.05■□□□□ 0.96
CUX1-213ENST00000549414 HFM1A2PYH4 1435 aa21.04■□□□□ 0.96
CUX1-213ENST00000549414 CDK13Q14004 1512 aaKnown RBP21.04■□□□□ 0.96
CUX1-213ENST00000549414 PCF11O94913 1555 aaKnown RBP21.03■□□□□ 0.96
CUX1-213ENST00000549414 SNAPC4Q5SXM2 1469 aa21.02■□□□□ 0.96
CUX1-213ENST00000549414 ERICH6BQ5W0A0 696 aa21.02■□□□□ 0.96
CUX1-213ENST00000549414 WDR97A6NE52 1622 aa21.02■□□□□ 0.96
CUX1-213ENST00000549414 PLIN1O60240 522 aa21.02■□□□□ 0.95
CUX1-213ENST00000549414 OSCARQ8IYS5 282 aa21.01■□□□□ 0.95
CUX1-213ENST00000549414 ZBED9Q6R2W3 1325 aa21■□□□□ 0.95
CUX1-213ENST00000549414 RRP7AQ9Y3A4 280 aaKnown RBP21■□□□□ 0.95
CUX1-213ENST00000549414 EIF3AQ14152 1382 aaKnown RBP21■□□□□ 0.95
CUX1-213ENST00000549414 BECN1Q14457 450 aa21■□□□□ 0.95
CUX1-213ENST00000549414 GOLGA2Q08379 1002 aa20.99■□□□□ 0.95
CUX1-213ENST00000549414 NAIPQ13075 1403 aa20.98■□□□□ 0.95
CUX1-213ENST00000549414 EHBP1L1Q8N3D4 1523 aa20.98■□□□□ 0.95
CUX1-213ENST00000549414 HDGFL2Q7Z4V5 671 aaPredicted RBP20.98■□□□□ 0.95
CUX1-213ENST00000549414 IFT140Q96RY7 1462 aa20.97■□□□□ 0.95
CUX1-213ENST00000549414 CLUAP1Q96AJ1 413 aa20.97■□□□□ 0.95
CUX1-213ENST00000549414 NBPF1Q3BBV0 1214 aa20.96■□□□□ 0.95
CUX1-213ENST00000549414 NUTM2FA1L443 756 aa20.96■□□□□ 0.95
CUX1-213ENST00000549414 CNTLNQ9NXG0 1405 aa20.96■□□□□ 0.95
CUX1-213ENST00000549414 CCDC184Q52MB2 194 aa20.95■□□□□ 0.94
CUX1-213ENST00000549414 EPRSP07814 1512 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms