RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 AKNAQ7Z591 1439 aa25.07■■□□□ 1.6
CHMP1A-204ENST00000547687 LRRC9Q6ZRR7 1453 aa25.06■■□□□ 1.6
CHMP1A-204ENST00000547687 CFAP74Q9C0B2 1584 aa25.06■■□□□ 1.6
CHMP1A-204ENST00000547687 PHLDB1Q86UU1 1377 aa25.05■■□□□ 1.6
CHMP1A-204ENST00000547687 PLCH2O75038 1416 aa25.04■■□□□ 1.6
CHMP1A-204ENST00000547687 RICTORQ6R327 1708 aa25.03■■□□□ 1.6
CHMP1A-204ENST00000547687 CDC42BPBQ9Y5S2 1711 aa25.01■■□□□ 1.59
CHMP1A-204ENST00000547687 ADGRL1O94910 1474 aa25■■□□□ 1.59
CHMP1A-204ENST00000547687 ARHGAP5Q13017 1502 aa24.99■■□□□ 1.59
CHMP1A-204ENST00000547687 DENND4BO75064 1496 aaPredicted RBP24.99■■□□□ 1.59
CHMP1A-204ENST00000547687 CDC42BPAQ5VT25 1732 aa24.97■■□□□ 1.59
CHMP1A-204ENST00000547687 CCER1Q8TC90 406 aaPredicted RBP24.96■■□□□ 1.59
CHMP1A-204ENST00000547687 EFCAB2Q5VUJ9 269 aa24.95■■□□□ 1.58
CHMP1A-204ENST00000547687 SCAPERQ9BY12 1400 aa24.95■■□□□ 1.58
CHMP1A-204ENST00000547687 PREX2Q70Z35 1606 aa24.94■■□□□ 1.58
CHMP1A-204ENST00000547687 MTUS2Q5JR59 1369 aa24.91■■□□□ 1.58
CHMP1A-204ENST00000547687 POGZQ7Z3K3 1410 aa24.88■■□□□ 1.57
CHMP1A-204ENST00000547687 ARHGEF40Q8TER5 1519 aa24.87■■□□□ 1.57
CHMP1A-204ENST00000547687 RRBP1Q9P2E9 1410 aaKnown RBP24.86■■□□□ 1.57
CHMP1A-204ENST00000547687 YEATS2Q9ULM3 1422 aa24.86■■□□□ 1.57
CHMP1A-204ENST00000547687 ZMYM4Q5VZL5 1548 aa24.85■■□□□ 1.57
CHMP1A-204ENST00000547687 ZNF777Q9ULD5 760 aaPredicted RBP24.85■■□□□ 1.57
CHMP1A-204ENST00000547687 SIGLEC1Q9BZZ2 1709 aa24.84■■□□□ 1.57
CHMP1A-204ENST00000547687 AFAP1Q8N556 730 aa24.83■■□□□ 1.57
CHMP1A-204ENST00000547687 ZFYVE16Q7Z3T8 1539 aa24.83■■□□□ 1.56
CHMP1A-204ENST00000547687 GPATCH8Q9UKJ3 1502 aaKnown RBP24.83■■□□□ 1.56
CHMP1A-204ENST00000547687 ARID4BQ4LE39 1312 aaPredicted RBP24.82■■□□□ 1.56
CHMP1A-204ENST00000547687 EHBP1L1Q8N3D4 1523 aa24.82■■□□□ 1.56
CHMP1A-204ENST00000547687 ARHGEF12Q9NZN5 1544 aa24.82■■□□□ 1.56
CHMP1A-204ENST00000547687 ITSN2Q9NZM3 1697 aa24.81■■□□□ 1.56
CHMP1A-204ENST00000547687 ABCC1P33527 1531 aa24.8■■□□□ 1.56
CHMP1A-204ENST00000547687 CCNB3Q8WWL7 1395 aa24.8■■□□□ 1.56
CHMP1A-204ENST00000547687 SAMD9LQ8IVG5 1584 aa24.79■■□□□ 1.56
CHMP1A-204ENST00000547687 TRAPPC8Q9Y2L5 1435 aa24.78■■□□□ 1.56
CHMP1A-204ENST00000547687 ZNF518AQ6AHZ1 1483 aa24.77■■□□□ 1.56
CHMP1A-204ENST00000547687 SUPT6HQ7KZ85 1726 aaKnown RBP24.77■■□□□ 1.56
CHMP1A-204ENST00000547687 MYT1LQ9UL68 1186 aa24.76■■□□□ 1.55
CHMP1A-204ENST00000547687 BCORL1Q5H9F3 1711 aa24.75■■□□□ 1.55
CHMP1A-204ENST00000547687 NCOA2Q15596 1464 aa24.75■■□□□ 1.55
CHMP1A-204ENST00000547687 KDM5CP41229 1560 aa24.75■■□□□ 1.55
CHMP1A-204ENST00000547687 CFDP1Q9UEE9 299 aaPredicted RBP24.74■■□□□ 1.55
CHMP1A-204ENST00000547687 MAGI2Q86UL8 1455 aa24.74■■□□□ 1.55
CHMP1A-204ENST00000547687 SYCP2Q9BX26 1530 aa24.74■■□□□ 1.55
CHMP1A-204ENST00000547687 ADAMTSL3P82987 1691 aa24.73■■□□□ 1.55
CHMP1A-204ENST00000547687 HECW2Q9P2P5 1572 aa24.72■■□□□ 1.55
CHMP1A-204ENST00000547687 HNRNPMP52272 730 aaKnown RBP eCLIP24.72■■□□□ 1.55
CHMP1A-204ENST00000547687 ZNF644Q9H582 1327 aaPredicted RBP24.71■■□□□ 1.55
CHMP1A-204ENST00000547687 MADDQ8WXG6 1647 aa24.71■■□□□ 1.55
CHMP1A-204ENST00000547687 MLECQ14165 292 aa24.69■■□□□ 1.54
CHMP1A-204ENST00000547687 ABCA6Q8N139 1617 aa24.68■■□□□ 1.54
CHMP1A-204ENST00000547687 ATP10AO60312 1499 aa24.67■■□□□ 1.54
CHMP1A-204ENST00000547687 DIP2CQ9Y2E4 1556 aa24.66■■□□□ 1.54
CHMP1A-204ENST00000547687 KIDINS220Q9ULH0 1771 aa24.66■■□□□ 1.54
CHMP1A-204ENST00000547687 FGD6Q6ZV73 1430 aa24.65■■□□□ 1.54
CHMP1A-204ENST00000547687 FAM50AQ14320 339 aaKnown RBP24.65■■□□□ 1.54
CHMP1A-204ENST00000547687 RIMS1Q86UR5 1692 aaKnown RBP24.65■■□□□ 1.54
CHMP1A-204ENST00000547687 MYOM3Q5VTT5 1437 aa24.65■■□□□ 1.54
CHMP1A-204ENST00000547687 C9orf84Q5VXU9 1444 aa24.64■■□□□ 1.54
CHMP1A-204ENST00000547687 ITGAEP38570 1179 aa24.63■■□□□ 1.53
CHMP1A-204ENST00000547687 MLH3Q9UHC1 1453 aa24.62■■□□□ 1.53
CHMP1A-204ENST00000547687 PLPPR3Q6T4P5 718 aa24.62■■□□□ 1.53
CHMP1A-204ENST00000547687 PTPRMP28827 1452 aa24.61■■□□□ 1.53
CHMP1A-204ENST00000547687 FER1L4A9Z1Z3 1794 aa24.59■■□□□ 1.53
CHMP1A-204ENST00000547687 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.58■■□□□ 1.53
CHMP1A-204ENST00000547687 KIAA1107Q9UPP5 1409 aa24.58■■□□□ 1.53
CHMP1A-204ENST00000547687 PLEKHH2Q8IVE3 1493 aa24.58■■□□□ 1.53
CHMP1A-204ENST00000547687 SPAG9O60271 1321 aaKnown RBP24.57■■□□□ 1.52
CHMP1A-204ENST00000547687 CAMSAP2Q08AD1 1489 aa24.56■■□□□ 1.52
CHMP1A-204ENST00000547687 ATP7AQ04656 1500 aa24.54■■□□□ 1.52
CHMP1A-204ENST00000547687 MBD5Q9P267 1494 aa24.54■■□□□ 1.52
CHMP1A-204ENST00000547687 PTPN23Q9H3S7 1636 aa24.53■■□□□ 1.52
CHMP1A-204ENST00000547687 INO80Q9ULG1 1556 aaPredicted RBP24.53■■□□□ 1.52
CHMP1A-204ENST00000547687 REREQ9P2R6 1566 aa24.51■■□□□ 1.51
CHMP1A-204ENST00000547687 MIA2Q96PC5 1412 aa24.49■■□□□ 1.51
CHMP1A-204ENST00000547687 TCOF1Q13428 1488 aaKnown RBP24.46■■□□□ 1.51
CHMP1A-204ENST00000547687 CCDC141Q6ZP82 1450 aa24.44■■□□□ 1.5
CHMP1A-204ENST00000547687 CEBPAP49715 358 aaPredicted RBP24.43■■□□□ 1.5
CHMP1A-204ENST00000547687 AGLP35573 1532 aa24.43■■□□□ 1.5
CHMP1A-204ENST00000547687 ADGBQ8N7X0 1667 aa24.42■■□□□ 1.5
CHMP1A-204ENST00000547687 A2MP01023 1474 aa24.41■■□□□ 1.5
CHMP1A-204ENST00000547687 PTPRKQ15262 1439 aa24.4■■□□□ 1.5
CHMP1A-204ENST00000547687 PLXNC1O60486 1568 aa24.4■■□□□ 1.5
CHMP1A-204ENST00000547687 ARHGEF5Q12774 1597 aa24.39■■□□□ 1.5
CHMP1A-204ENST00000547687 SETD5Q9C0A6 1442 aa24.35■■□□□ 1.49
CHMP1A-204ENST00000547687 RTEL1-TNFRSF6BF6WH68 1400 aa24.35■■□□□ 1.49
CHMP1A-204ENST00000547687 C3P01024 1663 aa24.35■■□□□ 1.49
CHMP1A-204ENST00000547687 RAB3GAP2Q9H2M9 1393 aa24.35■■□□□ 1.49
CHMP1A-204ENST00000547687 GGT6Q6P531 493 aa24.34■■□□□ 1.49
CHMP1A-204ENST00000547687 DHX57Q6P158 1386 aaKnown RBP24.33■■□□□ 1.49
CHMP1A-204ENST00000547687 ESF1Q9H501 851 aaKnown RBP24.33■■□□□ 1.49
CHMP1A-204ENST00000547687 CLSPNQ9HAW4 1339 aa24.33■■□□□ 1.48
CHMP1A-204ENST00000547687 LMTK3Q96Q04 1460 aa24.32■■□□□ 1.48
CHMP1A-204ENST00000547687 TSPY4P0CV99 314 aa24.32■■□□□ 1.48
CHMP1A-204ENST00000547687 TSPY10P0CW01 314 aa24.32■■□□□ 1.48
CHMP1A-204ENST00000547687 RSPH4AQ5TD94 716 aa24.32■■□□□ 1.48
CHMP1A-204ENST00000547687 CLTCQ00610 1675 aaKnown RBP24.31■■□□□ 1.48
CHMP1A-204ENST00000547687 HSPA2P54652 639 aa24.28■■□□□ 1.48
CHMP1A-204ENST00000547687 DHX29Q7Z478 1369 aaKnown RBP24.28■■□□□ 1.48
CHMP1A-204ENST00000547687 CHIC2Q9UKJ5 165 aa24.27■■□□□ 1.48
CHMP1A-204ENST00000547687 CROCC2H7BZ55 1655 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms