RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 CFAP74Q9C0B2 1584 aa26.29■■□□□ 1.8
LTBR-215ENST00000546296 RAPGEF3O95398 923 aa26.28■■□□□ 1.8
LTBR-215ENST00000546296 CFDP1Q9UEE9 299 aaPredicted RBP26.27■■□□□ 1.8
LTBR-215ENST00000546296 ZNF777Q9ULD5 760 aaPredicted RBP26.27■■□□□ 1.8
LTBR-215ENST00000546296 GPATCH8Q9UKJ3 1502 aaKnown RBP26.26■■□□□ 1.79
LTBR-215ENST00000546296 DENND4BO75064 1496 aaPredicted RBP26.23■■□□□ 1.79
LTBR-215ENST00000546296 ADGRL1O94910 1474 aa26.23■■□□□ 1.79
LTBR-215ENST00000546296 NCOA2Q15596 1464 aa26.23■■□□□ 1.79
LTBR-215ENST00000546296 SCAPERQ9BY12 1400 aa26.22■■□□□ 1.79
LTBR-215ENST00000546296 SUPT6HQ7KZ85 1726 aaKnown RBP26.22■■□□□ 1.79
LTBR-215ENST00000546296 PREX2Q70Z35 1606 aa26.21■■□□□ 1.79
LTBR-215ENST00000546296 CDC42BPAQ5VT25 1732 aa26.19■■□□□ 1.78
LTBR-215ENST00000546296 CDC42BPBQ9Y5S2 1711 aa26.19■■□□□ 1.78
LTBR-215ENST00000546296 AFAP1Q8N556 730 aa26.12■■□□□ 1.77
LTBR-215ENST00000546296 HNRNPMP52272 730 aaKnown RBP eCLIP26.11■■□□□ 1.77
LTBR-215ENST00000546296 MYT1LQ9UL68 1186 aa26.11■■□□□ 1.77
LTBR-215ENST00000546296 POGZQ7Z3K3 1410 aa26.11■■□□□ 1.77
LTBR-215ENST00000546296 ZNF644Q9H582 1327 aaPredicted RBP26.11■■□□□ 1.77
LTBR-215ENST00000546296 ITSN2Q9NZM3 1697 aa26.1■■□□□ 1.77
LTBR-215ENST00000546296 PLEKHH2Q8IVE3 1493 aa26.09■■□□□ 1.77
LTBR-215ENST00000546296 FRMPD1Q5SYB0 1578 aa26.08■■□□□ 1.77
LTBR-215ENST00000546296 ABCC1P33527 1531 aa26.08■■□□□ 1.77
LTBR-215ENST00000546296 PPARGC1BQ86YN6 1023 aaKnown RBP26.07■■□□□ 1.76
LTBR-215ENST00000546296 SAMD9LQ8IVG5 1584 aa26.07■■□□□ 1.76
LTBR-215ENST00000546296 ZNF518AQ6AHZ1 1483 aa26.06■■□□□ 1.76
LTBR-215ENST00000546296 RICTORQ6R327 1708 aa26.06■■□□□ 1.76
LTBR-215ENST00000546296 ARHGEF12Q9NZN5 1544 aa26.06■■□□□ 1.76
LTBR-215ENST00000546296 MYOM3Q5VTT5 1437 aa26.05■■□□□ 1.76
LTBR-215ENST00000546296 KIAA1107Q9UPP5 1409 aa26.05■■□□□ 1.76
LTBR-215ENST00000546296 TRAPPC8Q9Y2L5 1435 aa26.05■■□□□ 1.76
LTBR-215ENST00000546296 SYCP2Q9BX26 1530 aa26.02■■□□□ 1.76
LTBR-215ENST00000546296 MAGI2Q86UL8 1455 aa26■■□□□ 1.75
LTBR-215ENST00000546296 MIA2Q96PC5 1412 aa26■■□□□ 1.75
LTBR-215ENST00000546296 ZMYM4Q5VZL5 1548 aa25.99■■□□□ 1.75
LTBR-215ENST00000546296 CAMSAP2Q08AD1 1489 aa25.98■■□□□ 1.75
LTBR-215ENST00000546296 SPAG9O60271 1321 aaKnown RBP25.98■■□□□ 1.75
LTBR-215ENST00000546296 ZFYVE16Q7Z3T8 1539 aa25.97■■□□□ 1.75
LTBR-215ENST00000546296 RSPH4AQ5TD94 716 aa25.96■■□□□ 1.75
LTBR-215ENST00000546296 YEATS2Q9ULM3 1422 aa25.96■■□□□ 1.75
LTBR-215ENST00000546296 KDM5CP41229 1560 aa25.95■■□□□ 1.74
LTBR-215ENST00000546296 ARID4BQ4LE39 1312 aaPredicted RBP25.94■■□□□ 1.74
LTBR-215ENST00000546296 MBD5Q9P267 1494 aa25.93■■□□□ 1.74
LTBR-215ENST00000546296 MLH3Q9UHC1 1453 aa25.92■■□□□ 1.74
LTBR-215ENST00000546296 ARHGEF40Q8TER5 1519 aa25.92■■□□□ 1.74
LTBR-215ENST00000546296 FGD6Q6ZV73 1430 aa25.91■■□□□ 1.74
LTBR-215ENST00000546296 TSPY4P0CV99 314 aa25.9■■□□□ 1.74
LTBR-215ENST00000546296 TSPY10P0CW01 314 aa25.9■■□□□ 1.74
LTBR-215ENST00000546296 HECW2Q9P2P5 1572 aa25.9■■□□□ 1.74
LTBR-215ENST00000546296 ATP10AO60312 1499 aa25.89■■□□□ 1.73
LTBR-215ENST00000546296 CCDC141Q6ZP82 1450 aa25.87■■□□□ 1.73
LTBR-215ENST00000546296 FAM50AQ14320 339 aaKnown RBP25.87■■□□□ 1.73
LTBR-215ENST00000546296 PTPN23Q9H3S7 1636 aa25.85■■□□□ 1.73
LTBR-215ENST00000546296 C9orf84Q5VXU9 1444 aa25.84■■□□□ 1.73
LTBR-215ENST00000546296 KDM4FA0A1W2PPD8 638 aa25.83■■□□□ 1.73
LTBR-215ENST00000546296 ARHGEF5Q12774 1597 aa25.82■■□□□ 1.72
LTBR-215ENST00000546296 TCOF1Q13428 1488 aaKnown RBP25.81■■□□□ 1.72
LTBR-215ENST00000546296 ATP7AQ04656 1500 aa25.81■■□□□ 1.72
LTBR-215ENST00000546296 DIP2CQ9Y2E4 1556 aa25.8■■□□□ 1.72
LTBR-215ENST00000546296 RTEL1-TNFRSF6BF6WH68 1400 aa25.8■■□□□ 1.72
LTBR-215ENST00000546296 KIDINS220Q9ULH0 1771 aa25.79■■□□□ 1.72
LTBR-215ENST00000546296 MLECQ14165 292 aa25.79■■□□□ 1.72
LTBR-215ENST00000546296 ABCA6Q8N139 1617 aa25.78■■□□□ 1.72
LTBR-215ENST00000546296 AEBP2Q6ZN18 517 aaPredicted RBP25.77■■□□□ 1.72
LTBR-215ENST00000546296 INO80Q9ULG1 1556 aaPredicted RBP25.77■■□□□ 1.72
LTBR-215ENST00000546296 ABCC5O15440 1437 aa25.74■■□□□ 1.71
LTBR-215ENST00000546296 A2MP01023 1474 aa25.72■■□□□ 1.71
LTBR-215ENST00000546296 DAPK1P53355 1430 aa25.71■■□□□ 1.71
LTBR-215ENST00000546296 CHIC2Q9UKJ5 165 aa25.71■■□□□ 1.71
LTBR-215ENST00000546296 REREQ9P2R6 1566 aa25.7■■□□□ 1.71
LTBR-215ENST00000546296 SIGLEC1Q9BZZ2 1709 aa25.68■■□□□ 1.7
LTBR-215ENST00000546296 DHX29Q7Z478 1369 aaKnown RBP25.68■■□□□ 1.7
LTBR-215ENST00000546296 ITGAEP38570 1179 aa25.67■■□□□ 1.7
LTBR-215ENST00000546296 DNMT1P26358 1616 aaKnown RBP25.66■■□□□ 1.7
LTBR-215ENST00000546296 MAST1Q9Y2H9 1570 aa25.66■■□□□ 1.7
LTBR-215ENST00000546296 RRP7BPQ9NSQ0 103 aa25.66■■□□□ 1.7
LTBR-215ENST00000546296 AGLP35573 1532 aa25.66■■□□□ 1.7
LTBR-215ENST00000546296 SHANK2Q9UPX8 1470 aa25.66■■□□□ 1.7
LTBR-215ENST00000546296 BCORL1Q5H9F3 1711 aa25.66■■□□□ 1.7
LTBR-215ENST00000546296 ADGBQ8N7X0 1667 aa25.64■■□□□ 1.69
LTBR-215ENST00000546296 ESF1Q9H501 851 aaKnown RBP25.63■■□□□ 1.69
LTBR-215ENST00000546296 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.63■■□□□ 1.69
LTBR-215ENST00000546296 ANKRD30AQ9BXX3 1397 aa25.62■■□□□ 1.69
LTBR-215ENST00000546296 KIF3BO15066 747 aa25.61■■□□□ 1.69
LTBR-215ENST00000546296 GGT6Q6P531 493 aa25.61■■□□□ 1.69
LTBR-215ENST00000546296 RRBP1Q9P2E9 1410 aaKnown RBP25.61■■□□□ 1.69
LTBR-215ENST00000546296 ADAMTSL3P82987 1691 aa25.61■■□□□ 1.69
LTBR-215ENST00000546296 CROCC2H7BZ55 1655 aa25.6■■□□□ 1.69
LTBR-215ENST00000546296 KIF15Q9NS87 1388 aa25.59■■□□□ 1.69
LTBR-215ENST00000546296 PLXNC1O60486 1568 aa25.59■■□□□ 1.69
LTBR-215ENST00000546296 PLPPR3Q6T4P5 718 aa25.57■■□□□ 1.68
LTBR-215ENST00000546296 MADDQ8WXG6 1647 aa25.56■■□□□ 1.68
LTBR-215ENST00000546296 NCOA1Q15788 1441 aa25.54■■□□□ 1.68
LTBR-215ENST00000546296 DUOX2Q9NRD8 1548 aa25.54■■□□□ 1.68
LTBR-215ENST00000546296 PTPRKQ15262 1439 aa25.54■■□□□ 1.68
LTBR-215ENST00000546296 PTPRMP28827 1452 aa25.53■■□□□ 1.68
LTBR-215ENST00000546296 PPP6R1Q9UPN7 881 aa25.51■■□□□ 1.67
LTBR-215ENST00000546296 ADGRL2O95490 1459 aa25.51■■□□□ 1.67
LTBR-215ENST00000546296 RIMS1Q86UR5 1692 aaKnown RBP25.5■■□□□ 1.67
LTBR-215ENST00000546296 FER1L4A9Z1Z3 1794 aa25.48■■□□□ 1.67
LTBR-215ENST00000546296 ROCK1Q13464 1354 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms