RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FAM9BQ8IZU0 186 aa10.07□□□□□ -0.8
VPS13D-211ENST00000543710 NUTM2BA6NNL0 878 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-211ENST00000543710 NUTM2EB1AL46 878 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-211ENST00000543710 PAK3O75914 559 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-211ENST00000543710 NUTM2DQ5VT03 806 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-211ENST00000543710 NUTM2AQ8IVF1 878 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-211ENST00000543710 JPH4Q96JJ6 628 aa10.07□□□□□ -0.8
VPS13D-211ENST00000543710 NUDCQ9Y266 331 aa10.06□□□□□ -0.8
VPS13D-211ENST00000543710 CDK11BP21127 795 aaKnown RBP10.06□□□□□ -0.8
VPS13D-211ENST00000543710 CCDC88BA6NC98 1476 aa10.06□□□□□ -0.8
VPS13D-211ENST00000543710 CCDC18Q5T9S5 1454 aa10.05□□□□□ -0.8
VPS13D-211ENST00000543710 PTPRGP23470 1445 aa10.05□□□□□ -0.8
VPS13D-211ENST00000543710 KNSTRNQ9Y448 316 aa10.04□□□□□ -0.8
VPS13D-211ENST00000543710 WASHC2CQ9Y4E1 1318 aa10.04□□□□□ -0.8
VPS13D-211ENST00000543710 KIF21BO75037 1637 aa10.03□□□□□ -0.8
VPS13D-211ENST00000543710 CALD1Q05682 793 aaKnown RBP10.03□□□□□ -0.8
VPS13D-211ENST00000543710 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.03□□□□□ -0.8
VPS13D-211ENST00000543710 CARMIL1Q5VZK9 1371 aa10.03□□□□□ -0.8
VPS13D-211ENST00000543710 RAPGEF2Q9Y4G8 1499 aa10.03□□□□□ -0.8
VPS13D-211ENST00000543710 WDHD1O75717 1129 aaPredicted RBP10.02□□□□□ -0.8
VPS13D-211ENST00000543710 UACAQ9BZF9 1416 aa10.02□□□□□ -0.81
VPS13D-211ENST00000543710 UBAP1LF5GYI3 381 aa10.02□□□□□ -0.81
VPS13D-211ENST00000543710 RALBP1Q15311 655 aa10.02□□□□□ -0.81
VPS13D-211ENST00000543710 NRDCO43847 1150 aa10.02□□□□□ -0.81
VPS13D-211ENST00000543710 CUX2O14529 1486 aa10.01□□□□□ -0.81
VPS13D-211ENST00000543710 C16orf71Q8IYS4 520 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-211ENST00000543710 RSPH4AQ5TD94 716 aa10.01□□□□□ -0.81
VPS13D-211ENST00000543710 TMF1P82094 1093 aa10□□□□□ -0.81
VPS13D-211ENST00000543710 GTF2E1P29083 439 aaPredicted RBP10□□□□□ -0.81
VPS13D-211ENST00000543710 THEMISQ8N1K5 641 aaPredicted RBP10□□□□□ -0.81
VPS13D-211ENST00000543710 SPAG9O60271 1321 aaKnown RBP9.99□□□□□ -0.81
VPS13D-211ENST00000543710 KTN1Q86UP2 1357 aaKnown RBP9.99□□□□□ -0.81
VPS13D-211ENST00000543710 MCCP23508 829 aa9.99□□□□□ -0.81
VPS13D-211ENST00000543710 ZRSR1Q15695 479 aaKnown RBP9.99□□□□□ -0.81
VPS13D-211ENST00000543710 MAPK8IP3Q9UPT6 1336 aa9.99□□□□□ -0.81
VPS13D-211ENST00000543710 DNAJC5Q9H3Z4 198 aa9.99□□□□□ -0.81
VPS13D-211ENST00000543710 ERICH3Q5RHP9 1530 aa9.99□□□□□ -0.81
VPS13D-211ENST00000543710 NOP58Q9Y2X3 529 aaKnown RBP9.99□□□□□ -0.81
VPS13D-211ENST00000543710 CWC22Q9HCG8 908 aaKnown RBP9.99□□□□□ -0.81
VPS13D-211ENST00000543710 MROH2BQ7Z745 1585 aa9.98□□□□□ -0.81
VPS13D-211ENST00000543710 PROSER2Q86WR7 435 aaPredicted RBP9.98□□□□□ -0.81
VPS13D-211ENST00000543710 USP35Q9P2H5 1018 aa9.98□□□□□ -0.81
VPS13D-211ENST00000543710 CHIC2Q9UKJ5 165 aa9.98□□□□□ -0.81
VPS13D-211ENST00000543710 MIER1Q8N108 512 aa9.98□□□□□ -0.81
VPS13D-211ENST00000543710 NGDNQ8NEJ9 315 aaKnown RBP9.98□□□□□ -0.81
VPS13D-211ENST00000543710 TDRD9Q8NDG6 1382 aaKnown RBP9.97□□□□□ -0.81
VPS13D-211ENST00000543710 ANKRD30AQ9BXX3 1397 aa9.97□□□□□ -0.81
VPS13D-211ENST00000543710 WIZO95785 1651 aa9.97□□□□□ -0.81
VPS13D-211ENST00000543710 ANKLE2Q86XL3 938 aa9.97□□□□□ -0.81
VPS13D-211ENST00000543710 FTSJ3Q8IY81 847 aaKnown RBP9.96□□□□□ -0.81
VPS13D-211ENST00000543710 PSME1Q06323 249 aa9.96□□□□□ -0.82
VPS13D-211ENST00000543710 PDE3BQ13370 1112 aa9.96□□□□□ -0.82
VPS13D-211ENST00000543710 CARD11Q9BXL7 1154 aa9.96□□□□□ -0.82
VPS13D-211ENST00000543710 NBPF8Q3BBV2 869 aa9.95□□□□□ -0.82
VPS13D-211ENST00000543710 NBPF14Q5TI25 921 aa9.95□□□□□ -0.82
VPS13D-211ENST00000543710 EFCAB5A4FU69 1503 aa9.94□□□□□ -0.82
VPS13D-211ENST00000543710 NGLY1Q96IV0 654 aa9.94□□□□□ -0.82
VPS13D-211ENST00000543710 NGEFQ8N5V2 710 aa9.94□□□□□ -0.82
VPS13D-211ENST00000543710 HTATSF1O43719 755 aaKnown RBP9.93□□□□□ -0.82
VPS13D-211ENST00000543710 CHAF1AQ13111 956 aaPredicted RBP9.93□□□□□ -0.82
VPS13D-211ENST00000543710 HDAC5Q9UQL6 1122 aa9.93□□□□□ -0.82
VPS13D-211ENST00000543710 HSCBQ8IWL3 235 aa9.93□□□□□ -0.82
VPS13D-211ENST00000543710 SCAPERQ9BY12 1400 aa9.93□□□□□ -0.82
VPS13D-211ENST00000543710 KIF3BO15066 747 aa9.93□□□□□ -0.82
VPS13D-211ENST00000543710 CSPP1Q1MSJ5 1256 aa9.93□□□□□ -0.82
VPS13D-211ENST00000543710 CHMP4CQ96CF2 233 aa9.93□□□□□ -0.82
VPS13D-211ENST00000543710 TCERG1O14776 1098 aaKnown RBP9.93□□□□□ -0.82
VPS13D-211ENST00000543710 HDGFL2Q7Z4V5 671 aaPredicted RBP9.92□□□□□ -0.82
VPS13D-211ENST00000543710 PMFBP1Q8TBY8 1022 aa9.91□□□□□ -0.82
VPS13D-211ENST00000543710 MRC2Q9UBG0 1479 aa9.91□□□□□ -0.82
VPS13D-211ENST00000543710 IPO8O15397 1037 aaKnown RBP9.91□□□□□ -0.82
VPS13D-211ENST00000543710 AAMPQ13685 434 aa9.91□□□□□ -0.82
VPS13D-211ENST00000543710 PTMAP06454 111 aaKnown RBP9.9□□□□□ -0.82
VPS13D-211ENST00000543710 STAC3Q96MF2 364 aa9.9□□□□□ -0.82
VPS13D-211ENST00000543710 KDM2AQ9Y2K7 1162 aa9.9□□□□□ -0.82
VPS13D-211ENST00000543710 FANCD2Q9BXW9 1451 aa9.9□□□□□ -0.82
VPS13D-211ENST00000543710 SYAP1Q96A49 352 aaPredicted RBP9.9□□□□□ -0.83
VPS13D-211ENST00000543710 KIF15Q9NS87 1388 aa9.89□□□□□ -0.83
VPS13D-211ENST00000543710 HSP90AB1P08238 724 aaKnown RBP9.89□□□□□ -0.83
VPS13D-211ENST00000543710 BCL11AQ9H165 835 aa9.89□□□□□ -0.83
VPS13D-211ENST00000543710 GBP4Q96PP9 640 aa9.89□□□□□ -0.83
VPS13D-211ENST00000543710 RRP7BPQ9NSQ0 103 aa9.88□□□□□ -0.83
VPS13D-211ENST00000543710 HNRNPMP52272 730 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS13D-211ENST00000543710 BEGAINQ9BUH8 593 aa9.87□□□□□ -0.83
VPS13D-211ENST00000543710 PAXIP1Q6ZW49 1069 aaPredicted RBP9.87□□□□□ -0.83
VPS13D-211ENST00000543710 SUPT16HQ9Y5B9 1047 aaKnown RBP9.86□□□□□ -0.83
VPS13D-211ENST00000543710 NBR1Q14596 966 aa9.86□□□□□ -0.83
VPS13D-211ENST00000543710 TPM4P67936 248 aa9.85□□□□□ -0.83
VPS13D-211ENST00000543710 LMOD3Q0VAK6 560 aa9.85□□□□□ -0.83
VPS13D-211ENST00000543710 IFT140Q96RY7 1462 aa9.85□□□□□ -0.83
VPS13D-211ENST00000543710 MIA2Q96PC5 1412 aa9.85□□□□□ -0.83
VPS13D-211ENST00000543710 RGL3Q3MIN7 710 aa9.85□□□□□ -0.83
VPS13D-211ENST00000543710 RWDD1Q9H446 243 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-211ENST00000543710 ZNF330Q9Y3S2 320 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-211ENST00000543710 EHBP1L1Q8N3D4 1523 aa9.84□□□□□ -0.83
VPS13D-211ENST00000543710 ISY1Q9ULR0 285 aaKnown RBP9.84□□□□□ -0.83
VPS13D-211ENST00000543710 FYCO1Q9BQS8 1478 aa9.84□□□□□ -0.83
VPS13D-211ENST00000543710 PPP6R1Q9UPN7 881 aa9.84□□□□□ -0.83
VPS13D-211ENST00000543710 MSNP26038 577 aaKnown RBP9.84□□□□□ -0.83
VPS13D-211ENST00000543710 DNAJC5BQ9UF47 199 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms