RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 CCDC136Q96JN2 1154 aa9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 NPHP1O15259 732 aa9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 TNNT2P45379 298 aaPredicted RBP9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 SPAG9O60271 1321 aaKnown RBP9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 VPS8Q8N3P4 1428 aa9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 TMF1P82094 1093 aa9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 SMARCA4P51532 1647 aa9.06□□□□□ -0.96
SRGAP1-206ENST00000543397 HSP90B1P14625 803 aaKnown RBP9.05□□□□□ -0.96
SRGAP1-206ENST00000543397 PKD2Q13563 968 aa9.05□□□□□ -0.96
SRGAP1-206ENST00000543397 SOX12O15370 315 aa9.05□□□□□ -0.96
SRGAP1-206ENST00000543397 STK26Q9P289 416 aa9.05□□□□□ -0.96
SRGAP1-206ENST00000543397 ANKRD30AQ9BXX3 1397 aa9.05□□□□□ -0.96
SRGAP1-206ENST00000543397 PKNOX2Q96KN3 472 aa9.05□□□□□ -0.96
SRGAP1-206ENST00000543397 NEUROD2Q15784 382 aa9.04□□□□□ -0.96
SRGAP1-206ENST00000543397 RSPH4AQ5TD94 716 aa9.04□□□□□ -0.96
SRGAP1-206ENST00000543397 EID1Q9Y6B2 187 aa9.04□□□□□ -0.96
SRGAP1-206ENST00000543397 PTPRGP23470 1445 aa9.04□□□□□ -0.96
SRGAP1-206ENST00000543397 WASHC2CQ9Y4E1 1318 aa9.03□□□□□ -0.96
SRGAP1-206ENST00000543397 NUP155O75694 1391 aa9.03□□□□□ -0.96
SRGAP1-206ENST00000543397 U2SURPO15042 1029 aaKnown RBP9.03□□□□□ -0.96
SRGAP1-206ENST00000543397 LAS1LQ9Y4W2 734 aaKnown RBP9.03□□□□□ -0.96
SRGAP1-206ENST00000543397 HNRNPMP52272 730 aaKnown RBP eCLIP9.02□□□□□ -0.96
SRGAP1-206ENST00000543397 FHOD3Q2V2M9 1422 aa9.02□□□□□ -0.97
SRGAP1-206ENST00000543397 VSIG10Q8N0Z9 540 aa9.02□□□□□ -0.97
SRGAP1-206ENST00000543397 KANK4Q5T7N3 995 aaPredicted RBP9.01□□□□□ -0.97
SRGAP1-206ENST00000543397 CHMP4AQ9BY43 222 aa9.01□□□□□ -0.97
SRGAP1-206ENST00000543397 CCDC18Q5T9S5 1454 aa9.01□□□□□ -0.97
SRGAP1-206ENST00000543397 DHX37Q8IY37 1157 aaKnown RBP9.01□□□□□ -0.97
SRGAP1-206ENST00000543397 NAP1L5Q96NT1 182 aaPredicted RBP9.01□□□□□ -0.97
SRGAP1-206ENST00000543397 PNNQ9H307 717 aaKnown RBP9□□□□□ -0.97
SRGAP1-206ENST00000543397 PAK3O75914 559 aaPredicted RBP9□□□□□ -0.97
SRGAP1-206ENST00000543397 CC2D1BQ5T0F9 858 aaKnown RBP9□□□□□ -0.97
SRGAP1-206ENST00000543397 BRD2P25440 801 aaKnown RBP9□□□□□ -0.97
SRGAP1-206ENST00000543397 HDGFL2Q7Z4V5 671 aaPredicted RBP9□□□□□ -0.97
SRGAP1-206ENST00000543397 SETD5Q9C0A6 1442 aa8.99□□□□□ -0.97
SRGAP1-206ENST00000543397 FTSJ3Q8IY81 847 aaKnown RBP8.98□□□□□ -0.97
SRGAP1-206ENST00000543397 TAF7LQ5H9L4 462 aa8.98□□□□□ -0.97
SRGAP1-206ENST00000543397 SENP3-EIF4A1A0A087X0R7 540 aa8.98□□□□□ -0.97
SRGAP1-206ENST00000543397 CSB-PGBD3P0DP91 1061 aa8.98□□□□□ -0.97
SRGAP1-206ENST00000543397 FOXD1Q16676 465 aa8.98□□□□□ -0.97
SRGAP1-206ENST00000543397 MIER1Q8N108 512 aa8.98□□□□□ -0.97
SRGAP1-206ENST00000543397 MORC1Q86VD1 984 aa8.97□□□□□ -0.97
SRGAP1-206ENST00000543397 GAPVD1Q14C86 1478 aa8.96□□□□□ -0.97
SRGAP1-206ENST00000543397 FAM69CQ0P6D2 419 aa8.96□□□□□ -0.97
SRGAP1-206ENST00000543397 MPHOSPH9Q99550 1183 aa8.96□□□□□ -0.98
SRGAP1-206ENST00000543397 NCAPD3P42695 1498 aa8.95□□□□□ -0.98
SRGAP1-206ENST00000543397 AEBP1Q8IUX7 1158 aa8.95□□□□□ -0.98
SRGAP1-206ENST00000543397 ANP32BQ92688 251 aaKnown RBP8.95□□□□□ -0.98
SRGAP1-206ENST00000543397 RBM25P49756 843 aaKnown RBP8.94□□□□□ -0.98
SRGAP1-206ENST00000543397 IRX6P78412 446 aaPredicted RBP8.94□□□□□ -0.98
SRGAP1-206ENST00000543397 FGD5Q6ZNL6 1462 aa8.94□□□□□ -0.98
SRGAP1-206ENST00000543397 RTF1Q92541 710 aaKnown RBP8.94□□□□□ -0.98
SRGAP1-206ENST00000543397 NUTM2DQ5VT03 806 aaPredicted RBP8.93□□□□□ -0.98
SRGAP1-206ENST00000543397 NGDNQ8NEJ9 315 aaKnown RBP8.93□□□□□ -0.98
SRGAP1-206ENST00000543397 ROCK2O75116 1388 aaKnown RBP8.93□□□□□ -0.98
SRGAP1-206ENST00000543397 UBE2Q2Q8WVN8 375 aa8.92□□□□□ -0.98
SRGAP1-206ENST00000543397 CHMP4BQ9H444 224 aaKnown RBP8.92□□□□□ -0.98
SRGAP1-206ENST00000543397 EIF3AQ14152 1382 aaKnown RBP8.92□□□□□ -0.98
SRGAP1-206ENST00000543397 FRAT1Q92837 279 aaPredicted RBP8.91□□□□□ -0.98
SRGAP1-206ENST00000543397 RAD54L2Q9Y4B4 1467 aa8.91□□□□□ -0.98
SRGAP1-206ENST00000543397 OS9Q13438 667 aaPredicted RBP8.91□□□□□ -0.98
SRGAP1-206ENST00000543397 GOLGA2Q08379 1002 aa8.91□□□□□ -0.98
SRGAP1-206ENST00000543397 TERF2IPQ9NYB0 399 aa8.91□□□□□ -0.98
SRGAP1-206ENST00000543397 MS4A1P11836 297 aa8.9□□□□□ -0.98
SRGAP1-206ENST00000543397 AQRO60306 1485 aaKnown RBP eCLIP8.9□□□□□ -0.98
SRGAP1-206ENST00000543397 RAB3GAP2Q9H2M9 1393 aa8.9□□□□□ -0.99
SRGAP1-206ENST00000543397 CASC1Q6TDU7 716 aa8.89□□□□□ -0.99
SRGAP1-206ENST00000543397 NUTM2FA1L443 756 aa8.89□□□□□ -0.99
SRGAP1-206ENST00000543397 HSPA5P11021 654 aaKnown RBP8.89□□□□□ -0.99
SRGAP1-206ENST00000543397 ADRA2BP18089 450 aa8.88□□□□□ -0.99
SRGAP1-206ENST00000543397 IGF1RP08069 1367 aa8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 ZNF330Q9Y3S2 320 aaPredicted RBP8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 VGFO15240 615 aaPredicted RBP8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 U2AF1L5P0DN76 240 aaPredicted RBP8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 U2AF1Q01081 240 aaKnown RBP eCLIP8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 PSMD1Q99460 953 aa8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 KTN1Q86UP2 1357 aaKnown RBP8.87□□□□□ -0.99
SRGAP1-206ENST00000543397 TRAK1Q9UPV9 953 aa8.86□□□□□ -0.99
SRGAP1-206ENST00000543397 RAD21O60216 631 aa8.86□□□□□ -0.99
SRGAP1-206ENST00000543397 CCDC144AA2RUR9 1427 aa8.85□□□□□ -0.99
SRGAP1-206ENST00000543397 GRIN2BQ13224 1484 aa8.85□□□□□ -0.99
SRGAP1-206ENST00000543397 AMPHP49418 695 aa8.85□□□□□ -0.99
SRGAP1-206ENST00000543397 UACAQ9BZF9 1416 aa8.85□□□□□ -0.99
SRGAP1-206ENST00000543397 CALD1Q05682 793 aaKnown RBP8.85□□□□□ -0.99
SRGAP1-206ENST00000543397 PPP1R1BQ9UD71 204 aaPredicted RBP8.84□□□□□ -0.99
SRGAP1-206ENST00000543397 L3MBTL2Q969R5 705 aa8.84□□□□□ -0.99
SRGAP1-206ENST00000543397 RUSC2Q8N2Y8 1516 aa8.84□□□□□ -0.99
SRGAP1-206ENST00000543397 MRC2Q9UBG0 1479 aa8.84□□□□□ -0.99
SRGAP1-206ENST00000543397 BECN1Q14457 450 aa8.83□□□□□ -1
SRGAP1-206ENST00000543397 TMX4Q9H1E5 349 aaPredicted RBP8.83□□□□□ -1
SRGAP1-206ENST00000543397 CC2D2AQ9P2K1 1620 aa8.82□□□□□ -1
SRGAP1-206ENST00000543397 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.82□□□□□ -1
SRGAP1-206ENST00000543397 LTV1Q96GA3 475 aaPredicted RBP8.82□□□□□ -1
SRGAP1-206ENST00000543397 NESP48681 1621 aa8.82□□□□□ -1
SRGAP1-206ENST00000543397 FGD1P98174 961 aa8.82□□□□□ -1
SRGAP1-206ENST00000543397 NCLP19338 710 aaKnown RBP8.82□□□□□ -1
SRGAP1-206ENST00000543397 KCNJ4P48050 445 aa8.82□□□□□ -1
SRGAP1-206ENST00000543397 SUPT16HQ9Y5B9 1047 aaKnown RBP8.82□□□□□ -1
SRGAP1-206ENST00000543397 IFT140Q96RY7 1462 aa8.8□□□□□ -1
SRGAP1-206ENST00000543397 PRG4Q92954 1404 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms