RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 MIA2Q96PC5 1412 aa20.86■□□□□ 0.93
DDX55-209ENST00000542286 L3MBTL2Q969R5 705 aa20.85■□□□□ 0.93
DDX55-209ENST00000542286 ANP32EQ9BTT0 268 aa20.85■□□□□ 0.93
DDX55-209ENST00000542286 CFDP1Q9UEE9 299 aaPredicted RBP20.85■□□□□ 0.93
DDX55-209ENST00000542286 SYNJ2O15056 1496 aa20.83■□□□□ 0.93
DDX55-209ENST00000542286 GCC2Q8IWJ2 1684 aa20.83■□□□□ 0.93
DDX55-209ENST00000542286 CDK11AQ9UQ88 783 aaPredicted RBP20.83■□□□□ 0.92
DDX55-209ENST00000542286 HSPA5P11021 654 aaKnown RBP20.82■□□□□ 0.92
DDX55-209ENST00000542286 TSHZ2Q9NRE2 1034 aa20.81■□□□□ 0.92
DDX55-209ENST00000542286 ANP32CO43423 234 aa20.81■□□□□ 0.92
DDX55-209ENST00000542286 SLC4A1APQ9BWU0 796 aaKnown RBP20.81■□□□□ 0.92
DDX55-209ENST00000542286 KIF14Q15058 1648 aa20.8■□□□□ 0.92
DDX55-209ENST00000542286 MAGI1Q96QZ7 1491 aaPredicted RBP20.8■□□□□ 0.92
DDX55-209ENST00000542286 BCANQ96GW7 911 aa20.79■□□□□ 0.92
DDX55-209ENST00000542286 BCL11AQ9H165 835 aa20.78■□□□□ 0.92
DDX55-209ENST00000542286 NBPF8Q3BBV2 869 aa20.76■□□□□ 0.91
DDX55-209ENST00000542286 TROQ12816 1431 aaPredicted RBP20.76■□□□□ 0.91
DDX55-209ENST00000542286 WASHC2AQ641Q2 1341 aa20.76■□□□□ 0.91
DDX55-209ENST00000542286 C11orf95C9JLR9 678 aaPredicted RBP20.75■□□□□ 0.91
DDX55-209ENST00000542286 CAMSAP2Q08AD1 1489 aa20.74■□□□□ 0.91
DDX55-209ENST00000542286 DNMT1P26358 1616 aaKnown RBP20.73■□□□□ 0.91
DDX55-209ENST00000542286 GPATCH8Q9UKJ3 1502 aaKnown RBP20.73■□□□□ 0.91
DDX55-209ENST00000542286 CNGB1Q14028 1251 aaPredicted RBP20.73■□□□□ 0.91
DDX55-209ENST00000542286 ZNF326Q5BKZ1 582 aaKnown RBP20.73■□□□□ 0.91
DDX55-209ENST00000542286 AKNAQ7Z591 1439 aa20.72■□□□□ 0.91
DDX55-209ENST00000542286 NUP160Q12769 1436 aa20.71■□□□□ 0.91
DDX55-209ENST00000542286 CARMIL2Q6F5E8 1435 aa20.71■□□□□ 0.91
DDX55-209ENST00000542286 ANKRD30BQ9BXX2 1392 aa20.7■□□□□ 0.9
DDX55-209ENST00000542286 PLEKHD1A6NEE1 506 aa20.69■□□□□ 0.9
DDX55-209ENST00000542286 EIF4G2P78344 907 aaKnown RBP eCLIP20.68■□□□□ 0.9
DDX55-209ENST00000542286 ROCK1Q13464 1354 aa20.67■□□□□ 0.9
DDX55-209ENST00000542286 HNRNPMP52272 730 aaKnown RBP eCLIP20.66■□□□□ 0.9
DDX55-209ENST00000542286 NCOA1Q15788 1441 aa20.65■□□□□ 0.9
DDX55-209ENST00000542286 CCDC184Q52MB2 194 aa20.65■□□□□ 0.9
DDX55-209ENST00000542286 ATP10BO94823 1461 aa20.65■□□□□ 0.9
DDX55-209ENST00000542286 PKD2Q13563 968 aa20.64■□□□□ 0.89
DDX55-209ENST00000542286 FKBP8Q14318 412 aa20.63■□□□□ 0.89
DDX55-209ENST00000542286 PZPP20742 1482 aa20.62■□□□□ 0.89
DDX55-209ENST00000542286 CCER2I3L3R5 266 aa20.62■□□□□ 0.89
DDX55-209ENST00000542286 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
DDX55-209ENST00000542286 RPRD2Q5VT52 1461 aaKnown RBP20.6■□□□□ 0.89
DDX55-209ENST00000542286 TEX14Q8IWB6 1497 aa20.58■□□□□ 0.89
DDX55-209ENST00000542286 PTPRGP23470 1445 aa20.57■□□□□ 0.88
DDX55-209ENST00000542286 ABCA8O94911 1581 aa20.56■□□□□ 0.88
DDX55-209ENST00000542286 HNRNPUQ00839 825 aaKnown RBP eCLIP20.56■□□□□ 0.88
DDX55-209ENST00000542286 ITSN2Q9NZM3 1697 aa20.55■□□□□ 0.88
DDX55-209ENST00000542286 ANKRD50Q9ULJ7 1429 aa20.55■□□□□ 0.88
DDX55-209ENST00000542286 CDC42BPAQ5VT25 1732 aa20.55■□□□□ 0.88
DDX55-209ENST00000542286 NUP155O75694 1391 aa20.54■□□□□ 0.88
DDX55-209ENST00000542286 ANKRD30AQ9BXX3 1397 aa20.54■□□□□ 0.88
DDX55-209ENST00000542286 SENP3-EIF4A1A0A087X0R7 540 aa20.54■□□□□ 0.88
DDX55-209ENST00000542286 KDM2AQ9Y2K7 1162 aa20.53■□□□□ 0.88
DDX55-209ENST00000542286 ABCC10Q5T3U5 1492 aa20.53■□□□□ 0.88
DDX55-209ENST00000542286 CCDC7Q96M83 1385 aa20.52■□□□□ 0.88
DDX55-209ENST00000542286 C9orf84Q5VXU9 1444 aa20.51■□□□□ 0.87
DDX55-209ENST00000542286 ADCY10Q96PN6 1610 aa20.51■□□□□ 0.87
DDX55-209ENST00000542286 TSPY4P0CV99 314 aa20.51■□□□□ 0.87
DDX55-209ENST00000542286 TSPY10P0CW01 314 aa20.51■□□□□ 0.87
DDX55-209ENST00000542286 IRX6P78412 446 aaPredicted RBP20.51■□□□□ 0.87
DDX55-209ENST00000542286 KIF7Q2M1P5 1343 aa20.51■□□□□ 0.87
DDX55-209ENST00000542286 ERCC6L2Q5T890 1561 aa20.5■□□□□ 0.87
DDX55-209ENST00000542286 FAM9BQ8IZU0 186 aa20.49■□□□□ 0.87
DDX55-209ENST00000542286 KIAA1107Q9UPP5 1409 aa20.48■□□□□ 0.87
DDX55-209ENST00000542286 ADGBQ8N7X0 1667 aa20.48■□□□□ 0.87
DDX55-209ENST00000542286 CROCC2H7BZ55 1655 aa20.47■□□□□ 0.87
DDX55-209ENST00000542286 CHD1O14646 1710 aa20.47■□□□□ 0.87
DDX55-209ENST00000542286 CNTLNQ9NXG0 1405 aa20.47■□□□□ 0.87
DDX55-209ENST00000542286 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.46■□□□□ 0.877e-7■■■■□ 19.5
DDX55-209ENST00000542286 ADGRL2O95490 1459 aa20.46■□□□□ 0.87
DDX55-209ENST00000542286 KIF15Q9NS87 1388 aa20.45■□□□□ 0.86
DDX55-209ENST00000542286 PRKRIP1Q9H875 184 aaPredicted RBP20.44■□□□□ 0.86
DDX55-209ENST00000542286 SPATA31E1Q6ZUB1 1445 aa20.43■□□□□ 0.86
DDX55-209ENST00000542286 MRS2Q9HD23 443 aa20.41■□□□□ 0.86
DDX55-209ENST00000542286 RGL3Q3MIN7 710 aa20.4■□□□□ 0.86
DDX55-209ENST00000542286 DCAF11Q8TEB1 546 aa20.4■□□□□ 0.86
DDX55-209ENST00000542286 USP47Q96K76 1375 aa20.39■□□□□ 0.86
DDX55-209ENST00000542286 MBD5Q9P267 1494 aa20.39■□□□□ 0.86
DDX55-209ENST00000542286 NEFLP07196 543 aa20.38■□□□□ 0.85
DDX55-209ENST00000542286 SAMD9LQ8IVG5 1584 aa20.38■□□□□ 0.85
DDX55-209ENST00000542286 CDC42BPBQ9Y5S2 1711 aa20.37■□□□□ 0.85
DDX55-209ENST00000542286 TTC37Q6PGP7 1564 aa20.35■□□□□ 0.85
DDX55-209ENST00000542286 CARD11Q9BXL7 1154 aa20.35■□□□□ 0.85
DDX55-209ENST00000542286 BCORL1Q5H9F3 1711 aa20.35■□□□□ 0.85
DDX55-209ENST00000542286 SYCP2Q9BX26 1530 aa20.34■□□□□ 0.85
DDX55-209ENST00000542286 RBM19Q9Y4C8 960 aaKnown RBP20.34■□□□□ 0.85
DDX55-209ENST00000542286 ARHGAP5Q13017 1502 aa20.33■□□□□ 0.84
DDX55-209ENST00000542286 ST20-MTHFSA0A0A6YYL1 179 aa20.31■□□□□ 0.84
DDX55-209ENST00000542286 CCDC141Q6ZP82 1450 aa20.31■□□□□ 0.84
DDX55-209ENST00000542286 SHANK2Q9UPX8 1470 aa20.31■□□□□ 0.84
DDX55-209ENST00000542286 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.29■□□□□ 0.84
DDX55-209ENST00000542286 PREX2Q70Z35 1606 aa20.27■□□□□ 0.84
DDX55-209ENST00000542286 NBPF1Q3BBV0 1214 aa20.27■□□□□ 0.83
DDX55-209ENST00000542286 PLEKHH2Q8IVE3 1493 aa20.25■□□□□ 0.83
DDX55-209ENST00000542286 DHX29Q7Z478 1369 aaKnown RBP20.25■□□□□ 0.83
DDX55-209ENST00000542286 ARHGEF12Q9NZN5 1544 aa20.25■□□□□ 0.83
DDX55-209ENST00000542286 FAM135AQ9P2D6 1515 aa20.25■□□□□ 0.83
DDX55-209ENST00000542286 KDM5CP41229 1560 aa20.23■□□□□ 0.83
DDX55-209ENST00000542286 ARHGEF5Q12774 1597 aa20.23■□□□□ 0.83
DDX55-209ENST00000542286 SHROOM2Q13796 1616 aa20.21■□□□□ 0.83
DDX55-209ENST00000542286 ABCC2Q92887 1545 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms