RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 MTUS2Q5JR59 1369 aa15.45■□□□□ 0.06
YBX3-212ENST00000542002 DENND4BO75064 1496 aaPredicted RBP15.44■□□□□ 0.06
YBX3-212ENST00000542002 GPATCH8Q9UKJ3 1502 aaKnown RBP15.43■□□□□ 0.06
YBX3-212ENST00000542002 AFAP1Q8N556 730 aa15.43■□□□□ 0.06
YBX3-212ENST00000542002 FRMPD1Q5SYB0 1578 aa15.43■□□□□ 0.06
YBX3-212ENST00000542002 ADGRL1O94910 1474 aa15.42■□□□□ 0.06
YBX3-212ENST00000542002 ARHGAP5Q13017 1502 aa15.42■□□□□ 0.06
YBX3-212ENST00000542002 ZNF777Q9ULD5 760 aaPredicted RBP15.4■□□□□ 0.06
YBX3-212ENST00000542002 MYO5CQ9NQX4 1742 aa15.4■□□□□ 0.06
YBX3-212ENST00000542002 ARHGEF12Q9NZN5 1544 aa15.39■□□□□ 0.05
YBX3-212ENST00000542002 CFDP1Q9UEE9 299 aaPredicted RBP15.39■□□□□ 0.05
YBX3-212ENST00000542002 CDC42BPBQ9Y5S2 1711 aa15.39■□□□□ 0.05
YBX3-212ENST00000542002 ZNF644Q9H582 1327 aaPredicted RBP15.39■□□□□ 0.05
YBX3-212ENST00000542002 CCNB3Q8WWL7 1395 aa15.38■□□□□ 0.05
YBX3-212ENST00000542002 POGZQ7Z3K3 1410 aa15.38■□□□□ 0.05
YBX3-212ENST00000542002 TIAM1Q13009 1591 aa15.37■□□□□ 0.05
YBX3-212ENST00000542002 CFAP74Q9C0B2 1584 aa15.37■□□□□ 0.05
YBX3-212ENST00000542002 HNRNPMP52272 730 aaKnown RBP eCLIP15.37■□□□□ 0.05
YBX3-212ENST00000542002 LRRC9Q6ZRR7 1453 aa15.37■□□□□ 0.05
YBX3-212ENST00000542002 RICTORQ6R327 1708 aa15.37■□□□□ 0.05
YBX3-212ENST00000542002 YEATS2Q9ULM3 1422 aa15.36■□□□□ 0.05
YBX3-212ENST00000542002 TRAPPC8Q9Y2L5 1435 aa15.36■□□□□ 0.05
YBX3-212ENST00000542002 EHBP1L1Q8N3D4 1523 aa15.36■□□□□ 0.05
YBX3-212ENST00000542002 PREX2Q70Z35 1606 aa15.35■□□□□ 0.05
YBX3-212ENST00000542002 CDC42BPAQ5VT25 1732 aa15.35■□□□□ 0.05
YBX3-212ENST00000542002 NCOA2Q15596 1464 aa15.34■□□□□ 0.05
YBX3-212ENST00000542002 MAP3K1Q13233 1512 aa15.34■□□□□ 0.05
YBX3-212ENST00000542002 ZMYM4Q5VZL5 1548 aa15.32■□□□□ 0.04
YBX3-212ENST00000542002 MAGI2Q86UL8 1455 aa15.31■□□□□ 0.04
YBX3-212ENST00000542002 ABCC1P33527 1531 aa15.31■□□□□ 0.04
YBX3-212ENST00000542002 SAMD9LQ8IVG5 1584 aa15.31■□□□□ 0.04
YBX3-212ENST00000542002 ZNF518AQ6AHZ1 1483 aa15.3■□□□□ 0.04
YBX3-212ENST00000542002 KIAA1107Q9UPP5 1409 aa15.29■□□□□ 0.04
YBX3-212ENST00000542002 ARID4BQ4LE39 1312 aaPredicted RBP15.29■□□□□ 0.04
YBX3-212ENST00000542002 APLP2Q06481 763 aa15.29■□□□□ 0.04
YBX3-212ENST00000542002 KDM5CP41229 1560 aa15.28■□□□□ 0.04
YBX3-212ENST00000542002 ZFYVE16Q7Z3T8 1539 aa15.27■□□□□ 0.04
YBX3-212ENST00000542002 MYT1LQ9UL68 1186 aa15.27■□□□□ 0.04
YBX3-212ENST00000542002 SYCP2Q9BX26 1530 aa15.27■□□□□ 0.03
YBX3-212ENST00000542002 ATP10AO60312 1499 aa15.27■□□□□ 0.03
YBX3-212ENST00000542002 MBD5Q9P267 1494 aa15.27■□□□□ 0.03
YBX3-212ENST00000542002 MLH3Q9UHC1 1453 aa15.27■□□□□ 0.03
YBX3-212ENST00000542002 ARHGEF40Q8TER5 1519 aa15.26■□□□□ 0.03
YBX3-212ENST00000542002 SUPT6HQ7KZ85 1726 aaKnown RBP15.26■□□□□ 0.03
YBX3-212ENST00000542002 SIGLEC1Q9BZZ2 1709 aa15.25■□□□□ 0.03
YBX3-212ENST00000542002 SPAG9O60271 1321 aaKnown RBP15.24■□□□□ 0.03
YBX3-212ENST00000542002 ITSN2Q9NZM3 1697 aa15.24■□□□□ 0.03
YBX3-212ENST00000542002 PLEKHH2Q8IVE3 1493 aa15.23■□□□□ 0.03
YBX3-212ENST00000542002 MLECQ14165 292 aa15.23■□□□□ 0.03
YBX3-212ENST00000542002 C9orf84Q5VXU9 1444 aa15.21■□□□□ 0.03
YBX3-212ENST00000542002 PPARGC1BQ86YN6 1023 aaKnown RBP15.21■□□□□ 0.03
YBX3-212ENST00000542002 CAMSAP2Q08AD1 1489 aa15.2■□□□□ 0.02
YBX3-212ENST00000542002 HECW2Q9P2P5 1572 aa15.2■□□□□ 0.02
YBX3-212ENST00000542002 MYOM3Q5VTT5 1437 aa15.2■□□□□ 0.02
YBX3-212ENST00000542002 DIP2CQ9Y2E4 1556 aa15.19■□□□□ 0.02
YBX3-212ENST00000542002 KIDINS220Q9ULH0 1771 aa15.19■□□□□ 0.02
YBX3-212ENST00000542002 ADAMTSL3P82987 1691 aa15.18■□□□□ 0.02
YBX3-212ENST00000542002 MIA2Q96PC5 1412 aa15.17■□□□□ 0.02
YBX3-212ENST00000542002 ABCA6Q8N139 1617 aa15.17■□□□□ 0.02
YBX3-212ENST00000542002 RSPH4AQ5TD94 716 aa15.17■□□□□ 0.02
YBX3-212ENST00000542002 PIAS4Q8N2W9 510 aaPredicted RBP15.17■□□□□ 0.02
YBX3-212ENST00000542002 BCORL1Q5H9F3 1711 aa15.17■□□□□ 0.02
YBX3-212ENST00000542002 PTPRMP28827 1452 aa15.14■□□□□ 0.01
YBX3-212ENST00000542002 ATP7AQ04656 1500 aa15.14■□□□□ 0.01
YBX3-212ENST00000542002 RTEL1-TNFRSF6BF6WH68 1400 aa15.14■□□□□ 0.01
YBX3-212ENST00000542002 MADDQ8WXG6 1647 aa15.13■□□□□ 0.01
YBX3-212ENST00000542002 CCDC141Q6ZP82 1450 aa15.13■□□□□ 0.01
YBX3-212ENST00000542002 REREQ9P2R6 1566 aa15.12■□□□□ 0.01
YBX3-212ENST00000542002 INO80Q9ULG1 1556 aaPredicted RBP15.12■□□□□ 0.01
YBX3-212ENST00000542002 FGD6Q6ZV73 1430 aa15.12■□□□□ 0.01
YBX3-212ENST00000542002 TSPY4P0CV99 314 aa15.12■□□□□ 0.01
YBX3-212ENST00000542002 TSPY10P0CW01 314 aa15.12■□□□□ 0.01
YBX3-212ENST00000542002 PLPPR3Q6T4P5 718 aa15.12■□□□□ 0.01
YBX3-212ENST00000542002 CEBPAP49715 358 aaPredicted RBP15.11■□□□□ 0.01
YBX3-212ENST00000542002 A2MP01023 1474 aa15.11■□□□□ 0.01
YBX3-212ENST00000542002 AGLP35573 1532 aa15.11■□□□□ 0.01
YBX3-212ENST00000542002 ARHGEF5Q12774 1597 aa15.1■□□□□ 0.01
YBX3-212ENST00000542002 DHX29Q7Z478 1369 aaKnown RBP15.1■□□□□ 0.01
YBX3-212ENST00000542002 ABCC5O15440 1437 aa15.09■□□□□ 0.01
YBX3-212ENST00000542002 TCOF1Q13428 1488 aaKnown RBP15.08■□□□□ 0.01
YBX3-212ENST00000542002 PTPN23Q9H3S7 1636 aa15.07■□□□□ 0
YBX3-212ENST00000542002 GGT6Q6P531 493 aa15.07■□□□□ 0
YBX3-212ENST00000542002 PLXNC1O60486 1568 aa15.07■□□□□ 0
YBX3-212ENST00000542002 FAM50AQ14320 339 aaKnown RBP15.06■□□□□ 0
YBX3-212ENST00000542002 RIMS1Q86UR5 1692 aaKnown RBP15.06■□□□□ 0
YBX3-212ENST00000542002 KIF3BO15066 747 aa15.05■□□□□ -0
YBX3-212ENST00000542002 CHIC2Q9UKJ5 165 aa15.05■□□□□ -0
YBX3-212ENST00000542002 DAPK1P53355 1430 aa15.04■□□□□ -0
YBX3-212ENST00000542002 RRP7BPQ9NSQ0 103 aa15.04■□□□□ -0
YBX3-212ENST00000542002 PPP6R1Q9UPN7 881 aa15.04■□□□□ -0
YBX3-212ENST00000542002 MAST1Q9Y2H9 1570 aa15.02□□□□□ -0.01
YBX3-212ENST00000542002 PTPRKQ15262 1439 aa15□□□□□ -0.01
YBX3-212ENST00000542002 ZMYM3Q14202 1370 aa15□□□□□ -0.01
YBX3-212ENST00000542002 ESF1Q9H501 851 aaKnown RBP15□□□□□ -0.01
YBX3-212ENST00000542002 FER1L4A9Z1Z3 1794 aa15□□□□□ -0.01
YBX3-212ENST00000542002 ADGBQ8N7X0 1667 aa15□□□□□ -0.01
YBX3-212ENST00000542002 DNMT1P26358 1616 aaKnown RBP14.98□□□□□ -0.01
YBX3-212ENST00000542002 NCOA1Q15788 1441 aa14.98□□□□□ -0.01
YBX3-212ENST00000542002 KIF15Q9NS87 1388 aa14.98□□□□□ -0.01
YBX3-212ENST00000542002 SHANK2Q9UPX8 1470 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms