RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 MPHOSPH9Q99550 1183 aa17.67■□□□□ 0.42
SFSWAP-208ENST00000539506 ABCC5O15440 1437 aa17.64■□□□□ 0.41
SFSWAP-208ENST00000539506 DAPK1P53355 1430 aa17.64■□□□□ 0.41
SFSWAP-208ENST00000539506 RAPGEF6Q8TEU7 1601 aa17.62■□□□□ 0.41
SFSWAP-208ENST00000539506 ANP32CO43423 234 aa17.62■□□□□ 0.41
SFSWAP-208ENST00000539506 CCER2I3L3R5 266 aa17.61■□□□□ 0.41
SFSWAP-208ENST00000539506 PRG4Q92954 1404 aaPredicted RBP17.61■□□□□ 0.41
SFSWAP-208ENST00000539506 CEP170Q5SW79 1584 aa17.6■□□□□ 0.41
SFSWAP-208ENST00000539506 L3MBTL2Q969R5 705 aa17.59■□□□□ 0.41
SFSWAP-208ENST00000539506 PLB1Q6P1J6 1458 aa17.59■□□□□ 0.41
SFSWAP-208ENST00000539506 HSPA5P11021 654 aaKnown RBP17.59■□□□□ 0.41
SFSWAP-208ENST00000539506 CNGB1Q14028 1251 aaPredicted RBP17.58■□□□□ 0.41
SFSWAP-208ENST00000539506 DNMT1P26358 1616 aaKnown RBP17.58■□□□□ 0.41
SFSWAP-208ENST00000539506 WASHC2AQ641Q2 1341 aa17.58■□□□□ 0.4
SFSWAP-208ENST00000539506 ROCK1Q13464 1354 aa17.58■□□□□ 0.4
SFSWAP-208ENST00000539506 CHMP7Q8WUX9 453 aaPredicted RBP17.57■□□□□ 0.4
SFSWAP-208ENST00000539506 ERCC6Q03468 1493 aa17.57■□□□□ 0.4
SFSWAP-208ENST00000539506 MSH5O43196 834 aa17.56■□□□□ 0.4
SFSWAP-208ENST00000539506 ANKRD30BQ9BXX2 1392 aa17.56■□□□□ 0.4
SFSWAP-208ENST00000539506 FBLN2P98095 1184 aa17.56■□□□□ 0.4
SFSWAP-208ENST00000539506 MAGI1Q96QZ7 1491 aaPredicted RBP17.55■□□□□ 0.4
SFSWAP-208ENST00000539506 SYNJ2O15056 1496 aa17.54■□□□□ 0.4
SFSWAP-208ENST00000539506 SENP3-EIF4A1A0A087X0R7 540 aa17.53■□□□□ 0.4
SFSWAP-208ENST00000539506 C11orf95C9JLR9 678 aaPredicted RBP17.53■□□□□ 0.4
SFSWAP-208ENST00000539506 PRKCSHP14314 528 aaPredicted RBP17.53■□□□□ 0.4
SFSWAP-208ENST00000539506 HNRNPUQ00839 825 aaKnown RBP eCLIP17.53■□□□□ 0.4
SFSWAP-208ENST00000539506 NBPF8Q3BBV2 869 aa17.53■□□□□ 0.4
SFSWAP-208ENST00000539506 TROQ12816 1431 aaPredicted RBP17.53■□□□□ 0.4
SFSWAP-208ENST00000539506 CDK11AQ9UQ88 783 aaPredicted RBP17.52■□□□□ 0.4
SFSWAP-208ENST00000539506 KIF14Q15058 1648 aa17.52■□□□□ 0.39
SFSWAP-208ENST00000539506 GPATCH8Q9UKJ3 1502 aaKnown RBP17.51■□□□□ 0.39
SFSWAP-208ENST00000539506 JPH4Q96JJ6 628 aa17.51■□□□□ 0.39
SFSWAP-208ENST00000539506 CAMSAP2Q08AD1 1489 aa17.5■□□□□ 0.39
SFSWAP-208ENST00000539506 RPRD2Q5VT52 1461 aaKnown RBP17.5■□□□□ 0.39
SFSWAP-208ENST00000539506 CFDP1Q9UEE9 299 aaPredicted RBP17.5■□□□□ 0.39
SFSWAP-208ENST00000539506 TEX14Q8IWB6 1497 aa17.49■□□□□ 0.39
SFSWAP-208ENST00000539506 EIF4G2P78344 907 aaKnown RBP eCLIP17.49■□□□□ 0.39
SFSWAP-208ENST00000539506 SLC4A1APQ9BWU0 796 aaKnown RBP17.49■□□□□ 0.39
SFSWAP-208ENST00000539506 NUP160Q12769 1436 aa17.48■□□□□ 0.39
SFSWAP-208ENST00000539506 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
SFSWAP-208ENST00000539506 PZPP20742 1482 aa17.47■□□□□ 0.39
SFSWAP-208ENST00000539506 NCOA1Q15788 1441 aa17.47■□□□□ 0.39
SFSWAP-208ENST00000539506 CCDC184Q52MB2 194 aa17.44■□□□□ 0.38
SFSWAP-208ENST00000539506 ADCY10Q96PN6 1610 aa17.43■□□□□ 0.38
SFSWAP-208ENST00000539506 ERICH6Q7L0X2 663 aa17.43■□□□□ 0.38
SFSWAP-208ENST00000539506 CARMIL2Q6F5E8 1435 aa17.42■□□□□ 0.38
SFSWAP-208ENST00000539506 SPATA31E1Q6ZUB1 1445 aa17.41■□□□□ 0.38
SFSWAP-208ENST00000539506 CCDC7Q96M83 1385 aa17.4■□□□□ 0.38
SFSWAP-208ENST00000539506 ITSN2Q9NZM3 1697 aa17.4■□□□□ 0.38
SFSWAP-208ENST00000539506 ATP10BO94823 1461 aa17.4■□□□□ 0.38
SFSWAP-208ENST00000539506 CNTLNQ9NXG0 1405 aa17.39■□□□□ 0.37
SFSWAP-208ENST00000539506 ADGRL2O95490 1459 aa17.39■□□□□ 0.37
SFSWAP-208ENST00000539506 ABCA8O94911 1581 aa17.39■□□□□ 0.37
SFSWAP-208ENST00000539506 CROCC2H7BZ55 1655 aa17.38■□□□□ 0.37
SFSWAP-208ENST00000539506 ABCC10Q5T3U5 1492 aa17.38■□□□□ 0.37
SFSWAP-208ENST00000539506 ADGBQ8N7X0 1667 aa17.37■□□□□ 0.37
SFSWAP-208ENST00000539506 SLC24A1O60721 1099 aa17.37■□□□□ 0.37
SFSWAP-208ENST00000539506 FAM9BQ8IZU0 186 aa17.37■□□□□ 0.37
SFSWAP-208ENST00000539506 CDC42BPAQ5VT25 1732 aa17.36■□□□□ 0.37
SFSWAP-208ENST00000539506 PLEKHD1A6NEE1 506 aa17.35■□□□□ 0.37
SFSWAP-208ENST00000539506 PKD2Q13563 968 aa17.35■□□□□ 0.37
SFSWAP-208ENST00000539506 B4GALNT3Q6L9W6 998 aa17.35■□□□□ 0.37
SFSWAP-208ENST00000539506 KIF7Q2M1P5 1343 aa17.35■□□□□ 0.37
SFSWAP-208ENST00000539506 KIAA1107Q9UPP5 1409 aa17.34■□□□□ 0.37
SFSWAP-208ENST00000539506 MBD5Q9P267 1494 aa17.34■□□□□ 0.37
SFSWAP-208ENST00000539506 PRKRIP1Q9H875 184 aaPredicted RBP17.34■□□□□ 0.37
SFSWAP-208ENST00000539506 ANKRD30AQ9BXX3 1397 aa17.34■□□□□ 0.37
SFSWAP-208ENST00000539506 ANKRD50Q9ULJ7 1429 aa17.33■□□□□ 0.37
SFSWAP-208ENST00000539506 C9orf84Q5VXU9 1444 aa17.3■□□□□ 0.36
SFSWAP-208ENST00000539506 HNRNPMP52272 730 aaKnown RBP eCLIP17.3■□□□□ 0.36
SFSWAP-208ENST00000539506 NBR1Q14596 966 aa17.28■□□□□ 0.36
SFSWAP-208ENST00000539506 ZNF326Q5BKZ1 582 aaKnown RBP17.28■□□□□ 0.36
SFSWAP-208ENST00000539506 POLR3GLQ9BT43 218 aa17.27■□□□□ 0.36
SFSWAP-208ENST00000539506 NUP155O75694 1391 aa17.27■□□□□ 0.36
SFSWAP-208ENST00000539506 BCORL1Q5H9F3 1711 aa17.26■□□□□ 0.35
SFSWAP-208ENST00000539506 SHANK2Q9UPX8 1470 aa17.26■□□□□ 0.35
SFSWAP-208ENST00000539506 PTPRGP23470 1445 aa17.25■□□□□ 0.35
SFSWAP-208ENST00000539506 POLR1AO95602 1720 aaPredicted RBP17.24■□□□□ 0.35
SFSWAP-208ENST00000539506 USP47Q96K76 1375 aa17.24■□□□□ 0.35
SFSWAP-208ENST00000539506 MRS2Q9HD23 443 aa17.23■□□□□ 0.35
SFSWAP-208ENST00000539506 DHX29Q7Z478 1369 aaKnown RBP17.22■□□□□ 0.35
SFSWAP-208ENST00000539506 KIF15Q9NS87 1388 aa17.22■□□□□ 0.35
SFSWAP-208ENST00000539506 TSPY4P0CV99 314 aa17.22■□□□□ 0.35
SFSWAP-208ENST00000539506 TSPY10P0CW01 314 aa17.22■□□□□ 0.35
SFSWAP-208ENST00000539506 KDM5CP41229 1560 aa17.2■□□□□ 0.34
SFSWAP-208ENST00000539506 SAMD9LQ8IVG5 1584 aa17.2■□□□□ 0.34
SFSWAP-208ENST00000539506 CDC42BPBQ9Y5S2 1711 aa17.2■□□□□ 0.34
SFSWAP-208ENST00000539506 KDM5DQ9BY66 1539 aa17.19■□□□□ 0.34
SFSWAP-208ENST00000539506 UHRF1BP1Q6BDS2 1440 aa17.19■□□□□ 0.34
SFSWAP-208ENST00000539506 ARHGEF5Q12774 1597 aa17.18■□□□□ 0.34
SFSWAP-208ENST00000539506 KDM2AQ9Y2K7 1162 aa17.16■□□□□ 0.34
SFSWAP-208ENST00000539506 ERCC6L2Q5T890 1561 aa17.15■□□□□ 0.34
SFSWAP-208ENST00000539506 CHD1O14646 1710 aa17.15■□□□□ 0.34
SFSWAP-208ENST00000539506 RALGAPBQ86X10 1494 aa17.15■□□□□ 0.34
SFSWAP-208ENST00000539506 PREX2Q70Z35 1606 aa17.14■□□□□ 0.33
SFSWAP-208ENST00000539506 CCDC141Q6ZP82 1450 aa17.14■□□□□ 0.33
SFSWAP-208ENST00000539506 PAK3O75914 559 aaPredicted RBP17.14■□□□□ 0.33
SFSWAP-208ENST00000539506 DEKP35659 375 aaKnown RBP17.14■□□□□ 0.33
SFSWAP-208ENST00000539506 TTC37Q6PGP7 1564 aa17.13■□□□□ 0.33
SFSWAP-208ENST00000539506 DCAF11Q8TEB1 546 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms