RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 FRMPD1Q5SYB0 1578 aa24.88■■□□□ 1.57
RPAIN-206ENST00000539417 CFAP74Q9C0B2 1584 aa24.88■■□□□ 1.57
RPAIN-206ENST00000539417 MAP3K1Q13233 1512 aa24.88■■□□□ 1.57
RPAIN-206ENST00000539417 GPATCH8Q9UKJ3 1502 aaKnown RBP24.88■■□□□ 1.57
RPAIN-206ENST00000539417 EFCAB2Q5VUJ9 269 aa24.85■■□□□ 1.57
RPAIN-206ENST00000539417 ADGRL1O94910 1474 aa24.83■■□□□ 1.57
RPAIN-206ENST00000539417 NCOA2Q15596 1464 aa24.82■■□□□ 1.56
RPAIN-206ENST00000539417 RICTORQ6R327 1708 aa24.82■■□□□ 1.56
RPAIN-206ENST00000539417 SCAPERQ9BY12 1400 aa24.81■■□□□ 1.56
RPAIN-206ENST00000539417 SUPT6HQ7KZ85 1726 aaKnown RBP24.81■■□□□ 1.56
RPAIN-206ENST00000539417 CCNB3Q8WWL7 1395 aa24.81■■□□□ 1.56
RPAIN-206ENST00000539417 DENND4BO75064 1496 aaPredicted RBP24.81■■□□□ 1.56
RPAIN-206ENST00000539417 ARHGEF12Q9NZN5 1544 aa24.78■■□□□ 1.56
RPAIN-206ENST00000539417 SAMD9LQ8IVG5 1584 aa24.77■■□□□ 1.56
RPAIN-206ENST00000539417 ZNF777Q9ULD5 760 aaPredicted RBP24.77■■□□□ 1.56
RPAIN-206ENST00000539417 APLP2Q06481 763 aa24.76■■□□□ 1.55
RPAIN-206ENST00000539417 ABCC1P33527 1531 aa24.75■■□□□ 1.55
RPAIN-206ENST00000539417 POGZQ7Z3K3 1410 aa24.74■■□□□ 1.55
RPAIN-206ENST00000539417 CFDP1Q9UEE9 299 aaPredicted RBP24.74■■□□□ 1.55
RPAIN-206ENST00000539417 ZNF644Q9H582 1327 aaPredicted RBP24.73■■□□□ 1.55
RPAIN-206ENST00000539417 ITSN2Q9NZM3 1697 aa24.71■■□□□ 1.55
RPAIN-206ENST00000539417 TRAPPC8Q9Y2L5 1435 aa24.71■■□□□ 1.55
RPAIN-206ENST00000539417 AFAP1Q8N556 730 aa24.7■■□□□ 1.55
RPAIN-206ENST00000539417 ZMYM4Q5VZL5 1548 aa24.68■■□□□ 1.54
RPAIN-206ENST00000539417 SYCP2Q9BX26 1530 aa24.68■■□□□ 1.54
RPAIN-206ENST00000539417 HNRNPMP52272 730 aaKnown RBP eCLIP24.67■■□□□ 1.54
RPAIN-206ENST00000539417 YEATS2Q9ULM3 1422 aa24.66■■□□□ 1.54
RPAIN-206ENST00000539417 KDM5CP41229 1560 aa24.65■■□□□ 1.54
RPAIN-206ENST00000539417 ZNF518AQ6AHZ1 1483 aa24.64■■□□□ 1.54
RPAIN-206ENST00000539417 PPARGC1BQ86YN6 1023 aaKnown RBP24.64■■□□□ 1.53
RPAIN-206ENST00000539417 ARHGEF40Q8TER5 1519 aa24.62■■□□□ 1.53
RPAIN-206ENST00000539417 MYOM3Q5VTT5 1437 aa24.61■■□□□ 1.53
RPAIN-206ENST00000539417 ZFYVE16Q7Z3T8 1539 aa24.61■■□□□ 1.53
RPAIN-206ENST00000539417 CAMSAP2Q08AD1 1489 aa24.61■■□□□ 1.53
RPAIN-206ENST00000539417 KIAA1107Q9UPP5 1409 aa24.6■■□□□ 1.53
RPAIN-206ENST00000539417 MBD5Q9P267 1494 aa24.6■■□□□ 1.53
RPAIN-206ENST00000539417 SIGLEC1Q9BZZ2 1709 aa24.59■■□□□ 1.53
RPAIN-206ENST00000539417 PLEKHH2Q8IVE3 1493 aa24.58■■□□□ 1.52
RPAIN-206ENST00000539417 HECW2Q9P2P5 1572 aa24.57■■□□□ 1.52
RPAIN-206ENST00000539417 MAGI2Q86UL8 1455 aa24.57■■□□□ 1.52
RPAIN-206ENST00000539417 KDM4FA0A1W2PPD8 638 aa24.57■■□□□ 1.52
RPAIN-206ENST00000539417 MLH3Q9UHC1 1453 aa24.55■■□□□ 1.52
RPAIN-206ENST00000539417 KIDINS220Q9ULH0 1771 aa24.54■■□□□ 1.52
RPAIN-206ENST00000539417 ABCA6Q8N139 1617 aa24.53■■□□□ 1.52
RPAIN-206ENST00000539417 MIA2Q96PC5 1412 aa24.53■■□□□ 1.52
RPAIN-206ENST00000539417 DIP2CQ9Y2E4 1556 aa24.52■■□□□ 1.52
RPAIN-206ENST00000539417 MYT1LQ9UL68 1186 aa24.51■■□□□ 1.51
RPAIN-206ENST00000539417 PTPN23Q9H3S7 1636 aa24.49■■□□□ 1.51
RPAIN-206ENST00000539417 SPAG9O60271 1321 aaKnown RBP24.49■■□□□ 1.51
RPAIN-206ENST00000539417 FGD6Q6ZV73 1430 aa24.49■■□□□ 1.51
RPAIN-206ENST00000539417 ATP10AO60312 1499 aa24.49■■□□□ 1.51
RPAIN-206ENST00000539417 INO80Q9ULG1 1556 aaPredicted RBP24.48■■□□□ 1.51
RPAIN-206ENST00000539417 ATP7AQ04656 1500 aa24.46■■□□□ 1.51
RPAIN-206ENST00000539417 ARHGEF5Q12774 1597 aa24.46■■□□□ 1.51
RPAIN-206ENST00000539417 CCDC141Q6ZP82 1450 aa24.46■■□□□ 1.51
RPAIN-206ENST00000539417 C9orf84Q5VXU9 1444 aa24.45■■□□□ 1.5
RPAIN-206ENST00000539417 ARID4BQ4LE39 1312 aaPredicted RBP24.44■■□□□ 1.5
RPAIN-206ENST00000539417 TCOF1Q13428 1488 aaKnown RBP24.43■■□□□ 1.5
RPAIN-206ENST00000539417 BCORL1Q5H9F3 1711 aa24.41■■□□□ 1.5
RPAIN-206ENST00000539417 REREQ9P2R6 1566 aa24.38■■□□□ 1.49
RPAIN-206ENST00000539417 ADAMTSL3P82987 1691 aa24.38■■□□□ 1.49
RPAIN-206ENST00000539417 MLECQ14165 292 aa24.38■■□□□ 1.49
RPAIN-206ENST00000539417 ABCC5O15440 1437 aa24.37■■□□□ 1.49
RPAIN-206ENST00000539417 RSPH4AQ5TD94 716 aa24.37■■□□□ 1.49
RPAIN-206ENST00000539417 RTEL1-TNFRSF6BF6WH68 1400 aa24.36■■□□□ 1.49
RPAIN-206ENST00000539417 ADGBQ8N7X0 1667 aa24.34■■□□□ 1.49
RPAIN-206ENST00000539417 DNMT1P26358 1616 aaKnown RBP24.33■■□□□ 1.49
RPAIN-206ENST00000539417 MADDQ8WXG6 1647 aa24.33■■□□□ 1.49
RPAIN-206ENST00000539417 FAM50AQ14320 339 aaKnown RBP24.33■■□□□ 1.49
RPAIN-206ENST00000539417 A2MP01023 1474 aa24.33■■□□□ 1.49
RPAIN-206ENST00000539417 CROCC2H7BZ55 1655 aa24.33■■□□□ 1.48
RPAIN-206ENST00000539417 TSPY4P0CV99 314 aa24.32■■□□□ 1.48
RPAIN-206ENST00000539417 TSPY10P0CW01 314 aa24.32■■□□□ 1.48
RPAIN-206ENST00000539417 DAPK1P53355 1430 aa24.32■■□□□ 1.48
RPAIN-206ENST00000539417 PLXNC1O60486 1568 aa24.32■■□□□ 1.48
RPAIN-206ENST00000539417 MAST1Q9Y2H9 1570 aa24.32■■□□□ 1.48
RPAIN-206ENST00000539417 AGLP35573 1532 aa24.31■■□□□ 1.48
RPAIN-206ENST00000539417 AEBP2Q6ZN18 517 aaPredicted RBP24.3■■□□□ 1.48
RPAIN-206ENST00000539417 RIMS1Q86UR5 1692 aaKnown RBP24.26■■□□□ 1.47
RPAIN-206ENST00000539417 CHIC2Q9UKJ5 165 aa24.26■■□□□ 1.47
RPAIN-206ENST00000539417 DHX29Q7Z478 1369 aaKnown RBP24.25■■□□□ 1.47
RPAIN-206ENST00000539417 SHANK2Q9UPX8 1470 aa24.25■■□□□ 1.47
RPAIN-206ENST00000539417 PTPRKQ15262 1439 aa24.25■■□□□ 1.47
RPAIN-206ENST00000539417 PTPRMP28827 1452 aa24.23■■□□□ 1.47
RPAIN-206ENST00000539417 FER1L4A9Z1Z3 1794 aa24.23■■□□□ 1.47
RPAIN-206ENST00000539417 RRBP1Q9P2E9 1410 aaKnown RBP24.2■■□□□ 1.46
RPAIN-206ENST00000539417 RRP7BPQ9NSQ0 103 aa24.19■■□□□ 1.46
RPAIN-206ENST00000539417 GGT6Q6P531 493 aa24.17■■□□□ 1.46
RPAIN-206ENST00000539417 PLPPR3Q6T4P5 718 aa24.17■■□□□ 1.46
RPAIN-206ENST00000539417 KIF15Q9NS87 1388 aa24.17■■□□□ 1.46
RPAIN-206ENST00000539417 KIF3BO15066 747 aa24.16■■□□□ 1.46
RPAIN-206ENST00000539417 ITGAEP38570 1179 aa24.16■■□□□ 1.46
RPAIN-206ENST00000539417 NCOA1Q15788 1441 aa24.15■■□□□ 1.46
RPAIN-206ENST00000539417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.14■■□□□ 1.46
RPAIN-206ENST00000539417 ADGRL2O95490 1459 aa24.14■■□□□ 1.46
RPAIN-206ENST00000539417 CEBPAP49715 358 aaPredicted RBP24.13■■□□□ 1.45
RPAIN-206ENST00000539417 DUOX2Q9NRD8 1548 aa24.13■■□□□ 1.45
RPAIN-206ENST00000539417 ANKRD30AQ9BXX3 1397 aa24.12■■□□□ 1.45
RPAIN-206ENST00000539417 CLTCQ00610 1675 aaKnown RBP24.1■■□□□ 1.45
RPAIN-206ENST00000539417 MROH1Q8NDA8 1641 aa24.08■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms