RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 CDC42BPBQ9Y5S2 1711 aa18.86■□□□□ 0.61
CHD4-203ENST00000535717 KDM6BO15054 1643 aa18.86■□□□□ 0.61
CHD4-203ENST00000535717 PREX2Q70Z35 1606 aa18.86■□□□□ 0.61
CHD4-203ENST00000535717 PHLDB1Q86UU1 1377 aa18.86■□□□□ 0.61
CHD4-203ENST00000535717 EFCAB2Q5VUJ9 269 aa18.86■□□□□ 0.61
CHD4-203ENST00000535717 ARHGAP5Q13017 1502 aa18.85■□□□□ 0.61
CHD4-203ENST00000535717 AKNAQ7Z591 1439 aa18.85■□□□□ 0.61
CHD4-203ENST00000535717 CFAP74Q9C0B2 1584 aa18.85■□□□□ 0.61
CHD4-203ENST00000535717 CFDP1Q9UEE9 299 aaPredicted RBP18.8■□□□□ 0.6
CHD4-203ENST00000535717 ADGRL1O94910 1474 aa18.79■□□□□ 0.6
CHD4-203ENST00000535717 ITSN2Q9NZM3 1697 aa18.79■□□□□ 0.6
CHD4-203ENST00000535717 SCAPERQ9BY12 1400 aa18.77■□□□□ 0.6
CHD4-203ENST00000535717 RAPGEF3O95398 923 aa18.77■□□□□ 0.6
CHD4-203ENST00000535717 ZNF777Q9ULD5 760 aaPredicted RBP18.77■□□□□ 0.6
CHD4-203ENST00000535717 PPARGC1BQ86YN6 1023 aaKnown RBP18.76■□□□□ 0.59
CHD4-203ENST00000535717 DENND4BO75064 1496 aaPredicted RBP18.76■□□□□ 0.59
CHD4-203ENST00000535717 SAMD9LQ8IVG5 1584 aa18.76■□□□□ 0.59
CHD4-203ENST00000535717 MYOM3Q5VTT5 1437 aa18.74■□□□□ 0.59
CHD4-203ENST00000535717 FRMPD1Q5SYB0 1578 aa18.74■□□□□ 0.59
CHD4-203ENST00000535717 ABCC1P33527 1531 aa18.74■□□□□ 0.59
CHD4-203ENST00000535717 ARHGEF12Q9NZN5 1544 aa18.74■□□□□ 0.59
CHD4-203ENST00000535717 ZNF644Q9H582 1327 aaPredicted RBP18.74■□□□□ 0.59
CHD4-203ENST00000535717 RICTORQ6R327 1708 aa18.72■□□□□ 0.59
CHD4-203ENST00000535717 POGZQ7Z3K3 1410 aa18.72■□□□□ 0.59
CHD4-203ENST00000535717 HNRNPMP52272 730 aaKnown RBP eCLIP18.7■□□□□ 0.58
CHD4-203ENST00000535717 PLEKHH2Q8IVE3 1493 aa18.7■□□□□ 0.58
CHD4-203ENST00000535717 SYCP2Q9BX26 1530 aa18.69■□□□□ 0.58
CHD4-203ENST00000535717 MIA2Q96PC5 1412 aa18.69■□□□□ 0.58
CHD4-203ENST00000535717 KIAA1107Q9UPP5 1409 aa18.69■□□□□ 0.58
CHD4-203ENST00000535717 TRAPPC8Q9Y2L5 1435 aa18.69■□□□□ 0.58
CHD4-203ENST00000535717 AFAP1Q8N556 730 aa18.69■□□□□ 0.58
CHD4-203ENST00000535717 CAMSAP2Q08AD1 1489 aa18.68■□□□□ 0.58
CHD4-203ENST00000535717 ZNF518AQ6AHZ1 1483 aa18.67■□□□□ 0.58
CHD4-203ENST00000535717 ZMYM4Q5VZL5 1548 aa18.66■□□□□ 0.58
CHD4-203ENST00000535717 FGD6Q6ZV73 1430 aa18.66■□□□□ 0.58
CHD4-203ENST00000535717 MBD5Q9P267 1494 aa18.65■□□□□ 0.58
CHD4-203ENST00000535717 KDM5CP41229 1560 aa18.64■□□□□ 0.58
CHD4-203ENST00000535717 PTPN23Q9H3S7 1636 aa18.63■□□□□ 0.57
CHD4-203ENST00000535717 MAGI2Q86UL8 1455 aa18.61■□□□□ 0.57
CHD4-203ENST00000535717 TCOF1Q13428 1488 aaKnown RBP18.6■□□□□ 0.57
CHD4-203ENST00000535717 YEATS2Q9ULM3 1422 aa18.6■□□□□ 0.57
CHD4-203ENST00000535717 MLH3Q9UHC1 1453 aa18.59■□□□□ 0.57
CHD4-203ENST00000535717 ARHGEF5Q12774 1597 aa18.59■□□□□ 0.57
CHD4-203ENST00000535717 HECW2Q9P2P5 1572 aa18.59■□□□□ 0.57
CHD4-203ENST00000535717 ZFYVE16Q7Z3T8 1539 aa18.59■□□□□ 0.57
CHD4-203ENST00000535717 ARHGEF40Q8TER5 1519 aa18.58■□□□□ 0.56
CHD4-203ENST00000535717 CCDC141Q6ZP82 1450 aa18.58■□□□□ 0.56
CHD4-203ENST00000535717 SPAG9O60271 1321 aaKnown RBP18.57■□□□□ 0.56
CHD4-203ENST00000535717 RSPH4AQ5TD94 716 aa18.57■□□□□ 0.56
CHD4-203ENST00000535717 MYT1LQ9UL68 1186 aa18.56■□□□□ 0.56
CHD4-203ENST00000535717 KIDINS220Q9ULH0 1771 aa18.55■□□□□ 0.56
CHD4-203ENST00000535717 FAM50AQ14320 339 aaKnown RBP18.54■□□□□ 0.56
CHD4-203ENST00000535717 INO80Q9ULG1 1556 aaPredicted RBP18.54■□□□□ 0.56
CHD4-203ENST00000535717 ATP7AQ04656 1500 aa18.53■□□□□ 0.56
CHD4-203ENST00000535717 ABCA6Q8N139 1617 aa18.52■□□□□ 0.56
CHD4-203ENST00000535717 ATP10AO60312 1499 aa18.52■□□□□ 0.56
CHD4-203ENST00000535717 DIP2CQ9Y2E4 1556 aa18.52■□□□□ 0.56
CHD4-203ENST00000535717 ABCC5O15440 1437 aa18.52■□□□□ 0.56
CHD4-203ENST00000535717 RTEL1-TNFRSF6BF6WH68 1400 aa18.51■□□□□ 0.55
CHD4-203ENST00000535717 TSPY4P0CV99 314 aa18.51■□□□□ 0.55
CHD4-203ENST00000535717 TSPY10P0CW01 314 aa18.51■□□□□ 0.55
CHD4-203ENST00000535717 DAPK1P53355 1430 aa18.5■□□□□ 0.55
CHD4-203ENST00000535717 DNMT1P26358 1616 aaKnown RBP18.5■□□□□ 0.55
CHD4-203ENST00000535717 RRBP1Q9P2E9 1410 aaKnown RBP18.49■□□□□ 0.55
CHD4-203ENST00000535717 C9orf84Q5VXU9 1444 aa18.49■□□□□ 0.55
CHD4-203ENST00000535717 MAST1Q9Y2H9 1570 aa18.48■□□□□ 0.55
CHD4-203ENST00000535717 SIGLEC1Q9BZZ2 1709 aa18.48■□□□□ 0.55
CHD4-203ENST00000535717 CROCC2H7BZ55 1655 aa18.47■□□□□ 0.55
CHD4-203ENST00000535717 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.47■□□□□ 0.55
CHD4-203ENST00000535717 SHANK2Q9UPX8 1470 aa18.46■□□□□ 0.55
CHD4-203ENST00000535717 REREQ9P2R6 1566 aa18.45■□□□□ 0.54
CHD4-203ENST00000535717 ARID4BQ4LE39 1312 aaPredicted RBP18.45■□□□□ 0.54
CHD4-203ENST00000535717 CHIC2Q9UKJ5 165 aa18.43■□□□□ 0.54
CHD4-203ENST00000535717 A2MP01023 1474 aa18.43■□□□□ 0.54
CHD4-203ENST00000535717 PTPRKQ15262 1439 aa18.42■□□□□ 0.54
CHD4-203ENST00000535717 ADGBQ8N7X0 1667 aa18.42■□□□□ 0.54
CHD4-203ENST00000535717 PLXNC1O60486 1568 aa18.41■□□□□ 0.54
CHD4-203ENST00000535717 ITGAEP38570 1179 aa18.4■□□□□ 0.54
CHD4-203ENST00000535717 DHX29Q7Z478 1369 aaKnown RBP18.4■□□□□ 0.54
CHD4-203ENST00000535717 AGLP35573 1532 aa18.39■□□□□ 0.54
CHD4-203ENST00000535717 KDM4FA0A1W2PPD8 638 aa18.39■□□□□ 0.53
CHD4-203ENST00000535717 RRP7BPQ9NSQ0 103 aa18.38■□□□□ 0.53
CHD4-203ENST00000535717 NCOA1Q15788 1441 aa18.38■□□□□ 0.53
CHD4-203ENST00000535717 ADGRL2O95490 1459 aa18.38■□□□□ 0.53
CHD4-203ENST00000535717 BCORL1Q5H9F3 1711 aa18.37■□□□□ 0.53
CHD4-203ENST00000535717 MLECQ14165 292 aa18.37■□□□□ 0.53
CHD4-203ENST00000535717 ANKRD30AQ9BXX3 1397 aa18.37■□□□□ 0.53
CHD4-203ENST00000535717 KIF15Q9NS87 1388 aa18.37■□□□□ 0.53
CHD4-203ENST00000535717 DUOX2Q9NRD8 1548 aa18.34■□□□□ 0.53
CHD4-203ENST00000535717 ADAMTSL3P82987 1691 aa18.34■□□□□ 0.53
CHD4-203ENST00000535717 ROCK1Q13464 1354 aa18.32■□□□□ 0.52
CHD4-203ENST00000535717 KIF3BO15066 747 aa18.31■□□□□ 0.52
CHD4-203ENST00000535717 MADDQ8WXG6 1647 aa18.3■□□□□ 0.52
CHD4-203ENST00000535717 ERBINQ96RT1 1412 aa18.29■□□□□ 0.52
CHD4-203ENST00000535717 GGT6Q6P531 493 aa18.28■□□□□ 0.52
CHD4-203ENST00000535717 EIF2AK4Q9P2K8 1649 aaKnown RBP18.27■□□□□ 0.52
CHD4-203ENST00000535717 FER1L4A9Z1Z3 1794 aa18.26■□□□□ 0.51
CHD4-203ENST00000535717 ANKRD50Q9ULJ7 1429 aa18.25■□□□□ 0.51
CHD4-203ENST00000535717 RIMS1Q86UR5 1692 aaKnown RBP18.25■□□□□ 0.51
CHD4-203ENST00000535717 RNF17Q9BXT8 1623 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms