RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 EHBP1L1Q8N3D4 1523 aa20.58■□□□□ 0.89
VPS28-216ENST00000533806 ADGRL1O94910 1474 aa20.58■□□□□ 0.89
VPS28-216ENST00000533806 ARHGAP5Q13017 1502 aa20.57■□□□□ 0.88
VPS28-216ENST00000533806 PREX2Q70Z35 1606 aa20.56■□□□□ 0.88
VPS28-216ENST00000533806 CDC42BPBQ9Y5S2 1711 aa20.56■□□□□ 0.88
VPS28-216ENST00000533806 RICTORQ6R327 1708 aa20.55■□□□□ 0.88
VPS28-216ENST00000533806 POGZQ7Z3K3 1410 aa20.54■□□□□ 0.88
VPS28-216ENST00000533806 LRRC9Q6ZRR7 1453 aa20.54■□□□□ 0.88
VPS28-216ENST00000533806 KANK4Q5T7N3 995 aaPredicted RBP20.53■□□□□ 0.88
VPS28-216ENST00000533806 CDC42BPAQ5VT25 1732 aa20.53■□□□□ 0.88
VPS28-216ENST00000533806 CCNB3Q8WWL7 1395 aa20.52■□□□□ 0.88
VPS28-216ENST00000533806 KDM4FA0A1W2PPD8 638 aa20.52■□□□□ 0.88
VPS28-216ENST00000533806 ZMYM4Q5VZL5 1548 aa20.52■□□□□ 0.87
VPS28-216ENST00000533806 ARHGEF12Q9NZN5 1544 aa20.51■□□□□ 0.87
VPS28-216ENST00000533806 NCOA2Q15596 1464 aa20.5■□□□□ 0.87
VPS28-216ENST00000533806 CFDP1Q9UEE9 299 aaPredicted RBP20.49■□□□□ 0.87
VPS28-216ENST00000533806 MAGI2Q86UL8 1455 aa20.49■□□□□ 0.87
VPS28-216ENST00000533806 ABCC1P33527 1531 aa20.48■□□□□ 0.87
VPS28-216ENST00000533806 AFAP1Q8N556 730 aa20.48■□□□□ 0.87
VPS28-216ENST00000533806 ZNF518AQ6AHZ1 1483 aa20.47■□□□□ 0.87
VPS28-216ENST00000533806 TRAPPC8Q9Y2L5 1435 aa20.46■□□□□ 0.87
VPS28-216ENST00000533806 KDM5CP41229 1560 aa20.46■□□□□ 0.87
VPS28-216ENST00000533806 SAMD9LQ8IVG5 1584 aa20.46■□□□□ 0.87
VPS28-216ENST00000533806 YEATS2Q9ULM3 1422 aa20.45■□□□□ 0.86
VPS28-216ENST00000533806 KIAA1107Q9UPP5 1409 aa20.45■□□□□ 0.86
VPS28-216ENST00000533806 SUPT6HQ7KZ85 1726 aaKnown RBP20.44■□□□□ 0.86
VPS28-216ENST00000533806 ARHGEF40Q8TER5 1519 aa20.43■□□□□ 0.86
VPS28-216ENST00000533806 ZNF777Q9ULD5 760 aaPredicted RBP20.43■□□□□ 0.86
VPS28-216ENST00000533806 ZNF644Q9H582 1327 aaPredicted RBP20.42■□□□□ 0.86
VPS28-216ENST00000533806 HNRNPMP52272 730 aaKnown RBP eCLIP20.41■□□□□ 0.86
VPS28-216ENST00000533806 PLEKHH2Q8IVE3 1493 aa20.41■□□□□ 0.86
VPS28-216ENST00000533806 MLH3Q9UHC1 1453 aa20.41■□□□□ 0.86
VPS28-216ENST00000533806 ZFYVE16Q7Z3T8 1539 aa20.41■□□□□ 0.86
VPS28-216ENST00000533806 ITSN2Q9NZM3 1697 aa20.39■□□□□ 0.86
VPS28-216ENST00000533806 APLP2Q06481 763 aa20.39■□□□□ 0.85
VPS28-216ENST00000533806 SYCP2Q9BX26 1530 aa20.38■□□□□ 0.85
VPS28-216ENST00000533806 MBD5Q9P267 1494 aa20.38■□□□□ 0.85
VPS28-216ENST00000533806 ATP10AO60312 1499 aa20.37■□□□□ 0.85
VPS28-216ENST00000533806 AEBP2Q6ZN18 517 aaPredicted RBP20.35■□□□□ 0.85
VPS28-216ENST00000533806 HECW2Q9P2P5 1572 aa20.34■□□□□ 0.85
VPS28-216ENST00000533806 MYOM3Q5VTT5 1437 aa20.33■□□□□ 0.84
VPS28-216ENST00000533806 MIA2Q96PC5 1412 aa20.32■□□□□ 0.84
VPS28-216ENST00000533806 SIGLEC1Q9BZZ2 1709 aa20.32■□□□□ 0.84
VPS28-216ENST00000533806 CAMSAP2Q08AD1 1489 aa20.31■□□□□ 0.84
VPS28-216ENST00000533806 C9orf84Q5VXU9 1444 aa20.31■□□□□ 0.84
VPS28-216ENST00000533806 SPAG9O60271 1321 aaKnown RBP20.3■□□□□ 0.84
VPS28-216ENST00000533806 DIP2CQ9Y2E4 1556 aa20.3■□□□□ 0.84
VPS28-216ENST00000533806 KIDINS220Q9ULH0 1771 aa20.29■□□□□ 0.84
VPS28-216ENST00000533806 REREQ9P2R6 1566 aa20.29■□□□□ 0.84
VPS28-216ENST00000533806 ARID4BQ4LE39 1312 aaPredicted RBP20.28■□□□□ 0.84
VPS28-216ENST00000533806 ABCA6Q8N139 1617 aa20.28■□□□□ 0.84
VPS28-216ENST00000533806 RSPH4AQ5TD94 716 aa20.28■□□□□ 0.84
VPS28-216ENST00000533806 ADAMTSL3P82987 1691 aa20.28■□□□□ 0.84
VPS28-216ENST00000533806 BCORL1Q5H9F3 1711 aa20.27■□□□□ 0.83
VPS28-216ENST00000533806 RTEL1-TNFRSF6BF6WH68 1400 aa20.26■□□□□ 0.83
VPS28-216ENST00000533806 INO80Q9ULG1 1556 aaPredicted RBP20.25■□□□□ 0.83
VPS28-216ENST00000533806 MYT1LQ9UL68 1186 aa20.25■□□□□ 0.83
VPS28-216ENST00000533806 CCDC141Q6ZP82 1450 aa20.24■□□□□ 0.83
VPS28-216ENST00000533806 ATP7AQ04656 1500 aa20.24■□□□□ 0.83
VPS28-216ENST00000533806 ARHGEF5Q12774 1597 aa20.24■□□□□ 0.83
VPS28-216ENST00000533806 AGLP35573 1532 aa20.23■□□□□ 0.83
VPS28-216ENST00000533806 FGD6Q6ZV73 1430 aa20.22■□□□□ 0.83
VPS28-216ENST00000533806 TCOF1Q13428 1488 aaKnown RBP20.19■□□□□ 0.82
VPS28-216ENST00000533806 PTPRMP28827 1452 aa20.18■□□□□ 0.82
VPS28-216ENST00000533806 MADDQ8WXG6 1647 aa20.17■□□□□ 0.82
VPS28-216ENST00000533806 MLECQ14165 292 aa20.17■□□□□ 0.82
VPS28-216ENST00000533806 A2MP01023 1474 aa20.17■□□□□ 0.82
VPS28-216ENST00000533806 PLXNC1O60486 1568 aa20.17■□□□□ 0.82
VPS28-216ENST00000533806 TSPY4P0CV99 314 aa20.16■□□□□ 0.82
VPS28-216ENST00000533806 TSPY10P0CW01 314 aa20.16■□□□□ 0.82
VPS28-216ENST00000533806 PTPN23Q9H3S7 1636 aa20.15■□□□□ 0.82
VPS28-216ENST00000533806 ABCC5O15440 1437 aa20.14■□□□□ 0.81
VPS28-216ENST00000533806 DHX29Q7Z478 1369 aaKnown RBP20.14■□□□□ 0.81
VPS28-216ENST00000533806 MAST1Q9Y2H9 1570 aa20.13■□□□□ 0.81
VPS28-216ENST00000533806 ADGBQ8N7X0 1667 aa20.1■□□□□ 0.81
VPS28-216ENST00000533806 PPARGC1BQ86YN6 1023 aaKnown RBP20.09■□□□□ 0.81
VPS28-216ENST00000533806 SHANK2Q9UPX8 1470 aa20.08■□□□□ 0.81
VPS28-216ENST00000533806 DAPK1P53355 1430 aa20.08■□□□□ 0.8
VPS28-216ENST00000533806 RIMS1Q86UR5 1692 aaKnown RBP20.07■□□□□ 0.8
VPS28-216ENST00000533806 DNMT1P26358 1616 aaKnown RBP20.05■□□□□ 0.8
VPS28-216ENST00000533806 FER1L4A9Z1Z3 1794 aa20.04■□□□□ 0.8
VPS28-216ENST00000533806 PPP6R1Q9UPN7 881 aa20.04■□□□□ 0.8
VPS28-216ENST00000533806 FAM50AQ14320 339 aaKnown RBP20.02■□□□□ 0.8
VPS28-216ENST00000533806 CNTLNQ9NXG0 1405 aa20.02■□□□□ 0.79
VPS28-216ENST00000533806 CROCC2H7BZ55 1655 aa20.01■□□□□ 0.79
VPS28-216ENST00000533806 KIF3BO15066 747 aa20.01■□□□□ 0.79
VPS28-216ENST00000533806 CEBPAP49715 358 aaPredicted RBP20.01■□□□□ 0.79
VPS28-216ENST00000533806 GGT6Q6P531 493 aa20.01■□□□□ 0.79
VPS28-216ENST00000533806 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20■□□□□ 0.793e-6■■□□□ 12.6
VPS28-216ENST00000533806 KIF15Q9NS87 1388 aa19.99■□□□□ 0.79
VPS28-216ENST00000533806 NCOA1Q15788 1441 aa19.99■□□□□ 0.79
VPS28-216ENST00000533806 RRP7BPQ9NSQ0 103 aa19.98■□□□□ 0.79
VPS28-216ENST00000533806 PTPRKQ15262 1439 aa19.98■□□□□ 0.79
VPS28-216ENST00000533806 ADGRL2O95490 1459 aa19.98■□□□□ 0.79
VPS28-216ENST00000533806 DUOX2Q9NRD8 1548 aa19.97■□□□□ 0.79
VPS28-216ENST00000533806 ESF1Q9H501 851 aaKnown RBP19.97■□□□□ 0.79
VPS28-216ENST00000533806 CHIC2Q9UKJ5 165 aa19.97■□□□□ 0.79
VPS28-216ENST00000533806 ZMYM3Q14202 1370 aa19.96■□□□□ 0.79
VPS28-216ENST00000533806 ANKRD30AQ9BXX3 1397 aa19.96■□□□□ 0.79
VPS28-216ENST00000533806 RRBP1Q9P2E9 1410 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms