RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 ARHGAP5Q13017 1502 aa18.83■□□□□ 0.6
SSBP3-214ENST00000533209 CCNB3Q8WWL7 1395 aa18.82■□□□□ 0.6
SSBP3-214ENST00000533209 PREX2Q70Z35 1606 aa18.82■□□□□ 0.6
SSBP3-214ENST00000533209 NCOA2Q15596 1464 aa18.82■□□□□ 0.6
SSBP3-214ENST00000533209 CDC42BPBQ9Y5S2 1711 aa18.8■□□□□ 0.6
SSBP3-214ENST00000533209 RAPGEF3O95398 923 aa18.8■□□□□ 0.6
SSBP3-214ENST00000533209 CDC42BPAQ5VT25 1732 aa18.8■□□□□ 0.6
SSBP3-214ENST00000533209 DENND4BO75064 1496 aaPredicted RBP18.79■□□□□ 0.6
SSBP3-214ENST00000533209 ADGRL1O94910 1474 aa18.79■□□□□ 0.6
SSBP3-214ENST00000533209 SUPT6HQ7KZ85 1726 aaKnown RBP18.79■□□□□ 0.6
SSBP3-214ENST00000533209 SCAPERQ9BY12 1400 aa18.78■□□□□ 0.6
SSBP3-214ENST00000533209 CFDP1Q9UEE9 299 aaPredicted RBP18.77■□□□□ 0.6
SSBP3-214ENST00000533209 FRMPD1Q5SYB0 1578 aa18.76■□□□□ 0.59
SSBP3-214ENST00000533209 ZNF777Q9ULD5 760 aaPredicted RBP18.73■□□□□ 0.59
SSBP3-214ENST00000533209 ARHGEF12Q9NZN5 1544 aa18.73■□□□□ 0.59
SSBP3-214ENST00000533209 POGZQ7Z3K3 1410 aa18.73■□□□□ 0.59
SSBP3-214ENST00000533209 ABCC1P33527 1531 aa18.72■□□□□ 0.59
SSBP3-214ENST00000533209 SAMD9LQ8IVG5 1584 aa18.72■□□□□ 0.59
SSBP3-214ENST00000533209 RICTORQ6R327 1708 aa18.71■□□□□ 0.59
SSBP3-214ENST00000533209 ITSN2Q9NZM3 1697 aa18.7■□□□□ 0.58
SSBP3-214ENST00000533209 ZNF644Q9H582 1327 aaPredicted RBP18.7■□□□□ 0.58
SSBP3-214ENST00000533209 MYOM3Q5VTT5 1437 aa18.68■□□□□ 0.58
SSBP3-214ENST00000533209 KIAA1107Q9UPP5 1409 aa18.68■□□□□ 0.58
SSBP3-214ENST00000533209 TRAPPC8Q9Y2L5 1435 aa18.68■□□□□ 0.58
SSBP3-214ENST00000533209 AFAP1Q8N556 730 aa18.68■□□□□ 0.58
SSBP3-214ENST00000533209 ZNF518AQ6AHZ1 1483 aa18.68■□□□□ 0.58
SSBP3-214ENST00000533209 ZMYM4Q5VZL5 1548 aa18.68■□□□□ 0.58
SSBP3-214ENST00000533209 PLEKHH2Q8IVE3 1493 aa18.67■□□□□ 0.58
SSBP3-214ENST00000533209 HNRNPMP52272 730 aaKnown RBP eCLIP18.67■□□□□ 0.58
SSBP3-214ENST00000533209 SYCP2Q9BX26 1530 aa18.66■□□□□ 0.58
SSBP3-214ENST00000533209 KDM5CP41229 1560 aa18.64■□□□□ 0.58
SSBP3-214ENST00000533209 MIA2Q96PC5 1412 aa18.64■□□□□ 0.57
SSBP3-214ENST00000533209 MAGI2Q86UL8 1455 aa18.64■□□□□ 0.57
SSBP3-214ENST00000533209 YEATS2Q9ULM3 1422 aa18.63■□□□□ 0.57
SSBP3-214ENST00000533209 CAMSAP2Q08AD1 1489 aa18.63■□□□□ 0.57
SSBP3-214ENST00000533209 MBD5Q9P267 1494 aa18.63■□□□□ 0.57
SSBP3-214ENST00000533209 ZFYVE16Q7Z3T8 1539 aa18.61■□□□□ 0.57
SSBP3-214ENST00000533209 PPARGC1BQ86YN6 1023 aaKnown RBP18.61■□□□□ 0.57
SSBP3-214ENST00000533209 ARHGEF40Q8TER5 1519 aa18.6■□□□□ 0.57
SSBP3-214ENST00000533209 MLH3Q9UHC1 1453 aa18.59■□□□□ 0.57
SSBP3-214ENST00000533209 FGD6Q6ZV73 1430 aa18.58■□□□□ 0.57
SSBP3-214ENST00000533209 HECW2Q9P2P5 1572 aa18.57■□□□□ 0.56
SSBP3-214ENST00000533209 SPAG9O60271 1321 aaKnown RBP18.56■□□□□ 0.56
SSBP3-214ENST00000533209 CCDC141Q6ZP82 1450 aa18.55■□□□□ 0.56
SSBP3-214ENST00000533209 RSPH4AQ5TD94 716 aa18.55■□□□□ 0.56
SSBP3-214ENST00000533209 ATP10AO60312 1499 aa18.54■□□□□ 0.56
SSBP3-214ENST00000533209 TCOF1Q13428 1488 aaKnown RBP18.54■□□□□ 0.56
SSBP3-214ENST00000533209 MYT1LQ9UL68 1186 aa18.54■□□□□ 0.56
SSBP3-214ENST00000533209 PTPN23Q9H3S7 1636 aa18.53■□□□□ 0.56
SSBP3-214ENST00000533209 ARHGEF5Q12774 1597 aa18.53■□□□□ 0.56
SSBP3-214ENST00000533209 KIDINS220Q9ULH0 1771 aa18.53■□□□□ 0.56
SSBP3-214ENST00000533209 DIP2CQ9Y2E4 1556 aa18.52■□□□□ 0.56
SSBP3-214ENST00000533209 INO80Q9ULG1 1556 aaPredicted RBP18.51■□□□□ 0.55
SSBP3-214ENST00000533209 C9orf84Q5VXU9 1444 aa18.51■□□□□ 0.55
SSBP3-214ENST00000533209 ATP7AQ04656 1500 aa18.51■□□□□ 0.55
SSBP3-214ENST00000533209 ABCA6Q8N139 1617 aa18.51■□□□□ 0.55
SSBP3-214ENST00000533209 KDM4FA0A1W2PPD8 638 aa18.5■□□□□ 0.55
SSBP3-214ENST00000533209 RTEL1-TNFRSF6BF6WH68 1400 aa18.49■□□□□ 0.55
SSBP3-214ENST00000533209 ARID4BQ4LE39 1312 aaPredicted RBP18.49■□□□□ 0.55
SSBP3-214ENST00000533209 SIGLEC1Q9BZZ2 1709 aa18.48■□□□□ 0.55
SSBP3-214ENST00000533209 TSPY4P0CV99 314 aa18.47■□□□□ 0.55
SSBP3-214ENST00000533209 TSPY10P0CW01 314 aa18.47■□□□□ 0.55
SSBP3-214ENST00000533209 ABCC5O15440 1437 aa18.47■□□□□ 0.55
SSBP3-214ENST00000533209 REREQ9P2R6 1566 aa18.47■□□□□ 0.55
SSBP3-214ENST00000533209 FAM50AQ14320 339 aaKnown RBP18.46■□□□□ 0.55
SSBP3-214ENST00000533209 DAPK1P53355 1430 aa18.44■□□□□ 0.54
SSBP3-214ENST00000533209 MAST1Q9Y2H9 1570 aa18.43■□□□□ 0.54
SSBP3-214ENST00000533209 DNMT1P26358 1616 aaKnown RBP18.42■□□□□ 0.54
SSBP3-214ENST00000533209 A2MP01023 1474 aa18.42■□□□□ 0.54
SSBP3-214ENST00000533209 SHANK2Q9UPX8 1470 aa18.42■□□□□ 0.54
SSBP3-214ENST00000533209 AGLP35573 1532 aa18.42■□□□□ 0.54
SSBP3-214ENST00000533209 BCORL1Q5H9F3 1711 aa18.4■□□□□ 0.54
SSBP3-214ENST00000533209 DHX29Q7Z478 1369 aaKnown RBP18.4■□□□□ 0.54
SSBP3-214ENST00000533209 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.4■□□□□ 0.54
SSBP3-214ENST00000533209 RRBP1Q9P2E9 1410 aaKnown RBP18.4■□□□□ 0.54
SSBP3-214ENST00000533209 PLXNC1O60486 1568 aa18.39■□□□□ 0.53
SSBP3-214ENST00000533209 MLECQ14165 292 aa18.39■□□□□ 0.53
SSBP3-214ENST00000533209 CROCC2H7BZ55 1655 aa18.38■□□□□ 0.53
SSBP3-214ENST00000533209 ADAMTSL3P82987 1691 aa18.38■□□□□ 0.53
SSBP3-214ENST00000533209 ADGBQ8N7X0 1667 aa18.38■□□□□ 0.53
SSBP3-214ENST00000533209 CHIC2Q9UKJ5 165 aa18.36■□□□□ 0.53
SSBP3-214ENST00000533209 PTPRKQ15262 1439 aa18.35■□□□□ 0.53
SSBP3-214ENST00000533209 RRP7BPQ9NSQ0 103 aa18.33■□□□□ 0.52
SSBP3-214ENST00000533209 MADDQ8WXG6 1647 aa18.33■□□□□ 0.52
SSBP3-214ENST00000533209 ADGRL2O95490 1459 aa18.33■□□□□ 0.52
SSBP3-214ENST00000533209 NCOA1Q15788 1441 aa18.32■□□□□ 0.52
SSBP3-214ENST00000533209 ANKRD30AQ9BXX3 1397 aa18.32■□□□□ 0.52
SSBP3-214ENST00000533209 KIF15Q9NS87 1388 aa18.32■□□□□ 0.52
SSBP3-214ENST00000533209 AEBP2Q6ZN18 517 aaPredicted RBP18.32■□□□□ 0.52
SSBP3-214ENST00000533209 DUOX2Q9NRD8 1548 aa18.3■□□□□ 0.52
SSBP3-214ENST00000533209 KIF3BO15066 747 aa18.3■□□□□ 0.52
SSBP3-214ENST00000533209 PTPRMP28827 1452 aa18.29■□□□□ 0.52
SSBP3-214ENST00000533209 ITGAEP38570 1179 aa18.29■□□□□ 0.52
SSBP3-214ENST00000533209 GGT6Q6P531 493 aa18.28■□□□□ 0.52
SSBP3-214ENST00000533209 ROCK1Q13464 1354 aa18.27■□□□□ 0.51
SSBP3-214ENST00000533209 RIMS1Q86UR5 1692 aaKnown RBP18.26■□□□□ 0.51
SSBP3-214ENST00000533209 ERBINQ96RT1 1412 aa18.25■□□□□ 0.51
SSBP3-214ENST00000533209 FER1L4A9Z1Z3 1794 aa18.25■□□□□ 0.51
SSBP3-214ENST00000533209 PPP6R1Q9UPN7 881 aa18.25■□□□□ 0.51
SSBP3-214ENST00000533209 EIF2AK4Q9P2K8 1649 aaKnown RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms