RNA–Protein interactions for RNA: ENST00000533115.5

SSSCA1-207, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 1,077 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-207ENST00000533115 ZMYM4Q5VZL5 1548 aa48.5■■■■■ 5.35
SSSCA1-207ENST00000533115 POGZQ7Z3K3 1410 aa48.49■■■■■ 5.35
SSSCA1-207ENST00000533115 CDC42BPBQ9Y5S2 1711 aa48.47■■■■■ 5.35
SSSCA1-207ENST00000533115 ARHGEF40Q8TER5 1519 aa48.46■■■■■ 5.35
SSSCA1-207ENST00000533115 PREX2Q70Z35 1606 aa48.45■■■■■ 5.35
SSSCA1-207ENST00000533115 MAGI2Q86UL8 1455 aa48.41■■■■■ 5.34
SSSCA1-207ENST00000533115 MTUS2Q5JR59 1369 aa48.37■■■■■ 5.33
SSSCA1-207ENST00000533115 ZFYVE16Q7Z3T8 1539 aa48.37■■■■■ 5.33
SSSCA1-207ENST00000533115 CDC42BPAQ5VT25 1732 aa48.36■■■■■ 5.33
SSSCA1-207ENST00000533115 YEATS2Q9ULM3 1422 aa48.33■■■■■ 5.33
SSSCA1-207ENST00000533115 ZNF518AQ6AHZ1 1483 aa48.31■■■■■ 5.32
SSSCA1-207ENST00000533115 ARID4BQ4LE39 1312 aaPredicted RBP48.31■■■■■ 5.32
SSSCA1-207ENST00000533115 GPATCH8Q9UKJ3 1502 aaKnown RBP48.27■■■■■ 5.32
SSSCA1-207ENST00000533115 AFAP1Q8N556 730 aa48.25■■■■■ 5.31
SSSCA1-207ENST00000533115 VPS8Q8N3P4 1428 aa48.24■■■■■ 5.31
SSSCA1-207ENST00000533115 ABCC1P33527 1531 aa48.24■■■■■ 5.31
SSSCA1-207ENST00000533115 EHBP1L1Q8N3D4 1523 aa48.23■■■■■ 5.31
SSSCA1-207ENST00000533115 ADAMTSL3P82987 1691 aa48.23■■■■■ 5.31
SSSCA1-207ENST00000533115 BCORL1Q5H9F3 1711 aa48.22■■■■■ 5.31
SSSCA1-207ENST00000533115 KDM5CP41229 1560 aa48.22■■■■■ 5.31
SSSCA1-207ENST00000533115 CCNB3Q8WWL7 1395 aa48.2■■■■■ 5.31
SSSCA1-207ENST00000533115 ARHGEF12Q9NZN5 1544 aa48.19■■■■■ 5.31
SSSCA1-207ENST00000533115 ITSN2Q9NZM3 1697 aa48.16■■■■■ 5.3
SSSCA1-207ENST00000533115 ZNF777Q9ULD5 760 aaPredicted RBP48.15■■■■■ 5.3
SSSCA1-207ENST00000533115 ATP10AO60312 1499 aa48.14■■■■■ 5.3
SSSCA1-207ENST00000533115 TRAPPC8Q9Y2L5 1435 aa48.14■■■■■ 5.3
SSSCA1-207ENST00000533115 SAMD9LQ8IVG5 1584 aa48.11■■■■■ 5.29
SSSCA1-207ENST00000533115 SIGLEC1Q9BZZ2 1709 aa48.11■■■■■ 5.29
SSSCA1-207ENST00000533115 CFDP1Q9UEE9 299 aaPredicted RBP48.11■■■■■ 5.29
SSSCA1-207ENST00000533115 TIAM1Q13009 1591 aa48.09■■■■■ 5.29
SSSCA1-207ENST00000533115 HECW2Q9P2P5 1572 aa48.09■■■■■ 5.29
SSSCA1-207ENST00000533115 MYT1LQ9UL68 1186 aa48.08■■■■■ 5.29
SSSCA1-207ENST00000533115 C9orf84Q5VXU9 1444 aa48.07■■■■■ 5.29
SSSCA1-207ENST00000533115 MLH3Q9UHC1 1453 aa48.06■■■■■ 5.28
SSSCA1-207ENST00000533115 MADDQ8WXG6 1647 aa48.05■■■■■ 5.28
SSSCA1-207ENST00000533115 PTPRMP28827 1452 aa48.04■■■■■ 5.28
SSSCA1-207ENST00000533115 SYCP2Q9BX26 1530 aa48.01■■■■■ 5.28
SSSCA1-207ENST00000533115 PLEKHH2Q8IVE3 1493 aa47.99■■■■■ 5.27
SSSCA1-207ENST00000533115 DIP2CQ9Y2E4 1556 aa47.98■■■■■ 5.27
SSSCA1-207ENST00000533115 KIAA1107Q9UPP5 1409 aa47.98■■■■■ 5.27
SSSCA1-207ENST00000533115 HNRNPMP52272 730 aaKnown RBP eCLIP47.97■■■■■ 5.27
SSSCA1-207ENST00000533115 SUPT6HQ7KZ85 1726 aaKnown RBP47.97■■■■■ 5.27
SSSCA1-207ENST00000533115 NCOA2Q15596 1464 aa47.95■■■■■ 5.27
SSSCA1-207ENST00000533115 ABCA6Q8N139 1617 aa47.92■■■■■ 5.26
SSSCA1-207ENST00000533115 MLECQ14165 292 aa47.92■■■■■ 5.26
SSSCA1-207ENST00000533115 MAP3K1Q13233 1512 aa47.91■■■■■ 5.26
SSSCA1-207ENST00000533115 LRRC9Q6ZRR7 1453 aa47.91■■■■■ 5.26
SSSCA1-207ENST00000533115 RIMS1Q86UR5 1692 aaKnown RBP47.89■■■■■ 5.26
SSSCA1-207ENST00000533115 KIDINS220Q9ULH0 1771 aa47.89■■■■■ 5.26
SSSCA1-207ENST00000533115 REREQ9P2R6 1566 aa47.88■■■■■ 5.25
SSSCA1-207ENST00000533115 ZNF644Q9H582 1327 aaPredicted RBP47.85■■■■■ 5.25
SSSCA1-207ENST00000533115 SPAG9O60271 1321 aaKnown RBP47.83■■■■■ 5.25
SSSCA1-207ENST00000533115 KANK4Q5T7N3 995 aaPredicted RBP47.78■■■■■ 5.24
SSSCA1-207ENST00000533115 FER1L4A9Z1Z3 1794 aa47.77■■■■■ 5.24
SSSCA1-207ENST00000533115 MBD5Q9P267 1494 aa47.74■■■■■ 5.23
SSSCA1-207ENST00000533115 AGLP35573 1532 aa47.73■■■■■ 5.23
SSSCA1-207ENST00000533115 ATP7AQ04656 1500 aa47.72■■■■■ 5.23
SSSCA1-207ENST00000533115 INO80Q9ULG1 1556 aaPredicted RBP47.71■■■■■ 5.23
SSSCA1-207ENST00000533115 APLP2Q06481 763 aa47.67■■■■■ 5.22
SSSCA1-207ENST00000533115 CAMSAP2Q08AD1 1489 aa47.66■■■■■ 5.22
SSSCA1-207ENST00000533115 PLPPR3Q6T4P5 718 aa47.63■■■■■ 5.22
SSSCA1-207ENST00000533115 CCDC141Q6ZP82 1450 aa47.55■■■■■ 5.2
SSSCA1-207ENST00000533115 RSPH4AQ5TD94 716 aa47.55■■■■■ 5.2
SSSCA1-207ENST00000533115 RTEL1-TNFRSF6BF6WH68 1400 aa47.55■■■■■ 5.2
SSSCA1-207ENST00000533115 A2MP01023 1474 aa47.53■■■■■ 5.2
SSSCA1-207ENST00000533115 MYOM3Q5VTT5 1437 aa47.51■■■■■ 5.2
SSSCA1-207ENST00000533115 PLXNC1O60486 1568 aa47.49■■■■■ 5.19
SSSCA1-207ENST00000533115 ARHGEF5Q12774 1597 aa47.47■■■■■ 5.19
SSSCA1-207ENST00000533115 ADGBQ8N7X0 1667 aa47.47■■■■■ 5.19
SSSCA1-207ENST00000533115 MIA2Q96PC5 1412 aa47.47■■■■■ 5.19
SSSCA1-207ENST00000533115 LMTK3Q96Q04 1460 aa47.46■■■■■ 5.19
SSSCA1-207ENST00000533115 ESF1Q9H501 851 aaKnown RBP47.46■■■■■ 5.19
SSSCA1-207ENST00000533115 CEBPAP49715 358 aaPredicted RBP47.45■■■■■ 5.19
SSSCA1-207ENST00000533115 TSPY4P0CV99 314 aa47.37■■■■■ 5.17
SSSCA1-207ENST00000533115 TSPY10P0CW01 314 aa47.37■■■■■ 5.17
SSSCA1-207ENST00000533115 CNTLNQ9NXG0 1405 aa47.37■■■■■ 5.17
SSSCA1-207ENST00000533115 DHX29Q7Z478 1369 aaKnown RBP47.34■■■■■ 5.17
SSSCA1-207ENST00000533115 C3P01024 1663 aa47.32■■■■■ 5.17
SSSCA1-207ENST00000533115 GGT6Q6P531 493 aa47.27■■■■■ 5.16
SSSCA1-207ENST00000533115 PREX1Q8TCU6 1659 aa47.24■■■■■ 5.15
SSSCA1-207ENST00000533115 MAST1Q9Y2H9 1570 aa47.23■■■■■ 5.15
SSSCA1-207ENST00000533115 HSPA2P54652 639 aa47.22■■■■■ 5.15
SSSCA1-207ENST00000533115 MROH2AA6NES4 1674 aa47.22■■■■■ 5.15
SSSCA1-207ENST00000533115 PTPN23Q9H3S7 1636 aa47.19■■■■■ 5.15
SSSCA1-207ENST00000533115 SETD1BQ9UPS6 1966 aaKnown RBP47.19■■■■■ 5.15
SSSCA1-207ENST00000533115 PPP6R1Q9UPN7 881 aa47.19■■■■■ 5.14
SSSCA1-207ENST00000533115 FGD6Q6ZV73 1430 aa47.17■■■■■ 5.14
SSSCA1-207ENST00000533115 ZMYM3Q14202 1370 aa47.17■■■■■ 5.14
SSSCA1-207ENST00000533115 CLTCQ00610 1675 aaKnown RBP47.16■■■■■ 5.14
SSSCA1-207ENST00000533115 KIF3BO15066 747 aa47.14■■■■■ 5.14
SSSCA1-207ENST00000533115 UHRF1BP1Q6BDS2 1440 aa47.13■■■■■ 5.13
SSSCA1-207ENST00000533115 TCOF1Q13428 1488 aaKnown RBP47.1■■■■■ 5.13
SSSCA1-207ENST00000533115 ABCC5O15440 1437 aa47.05■■■■■ 5.12
SSSCA1-207ENST00000533115 NPATQ14207 1427 aa47.05■■■■■ 5.12
SSSCA1-207ENST00000533115 SHANK2Q9UPX8 1470 aa47.02■■■■■ 5.12
SSSCA1-207ENST00000533115 CROCC2H7BZ55 1655 aa47.01■■■■■ 5.12
SSSCA1-207ENST00000533115 DAPK1P53355 1430 aa46.99■■■■■ 5.11
SSSCA1-207ENST00000533115 DNMT1P26358 1616 aaKnown RBP46.98■■■■■ 5.11
SSSCA1-207ENST00000533115 FAM135AQ9P2D6 1515 aa46.95■■■■■ 5.11
SSSCA1-207ENST00000533115 PTPRKQ15262 1439 aa46.94■■■■■ 5.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms