RNA–Protein interactions for RNA: ENST00000533115.5

SSSCA1-207, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 1,077 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-207ENST00000533115 NISCHQ9Y2I1 1504 aa74.46■■■■■ 9.51
SSSCA1-207ENST00000533115 CCDC180Q9P1Z9 1646 aa66.4■■■■■ 8.22
SSSCA1-207ENST00000533115 ABCC9O60706 1549 aa65.51■■■■■ 8.08
SSSCA1-207ENST00000533115 RB1CC1Q8TDY2 1594 aa62.78■■■■■ 7.64
SSSCA1-207ENST00000533115 NACADO15069 1562 aa62.58■■■■■ 7.61
SSSCA1-207ENST00000533115 DCAF8L2P0C7V8 631 aa62.46■■■■■ 7.59
SSSCA1-207ENST00000533115 MYO15BQ96JP2 1530 aa62.04■■■■■ 7.52
SSSCA1-207ENST00000533115 ZCCHC6Q5VYS8 1495 aaKnown RBP61.9■■■■■ 7.5
SSSCA1-207ENST00000533115 DCAF1Q9Y4B6 1507 aa61.58■■■■■ 7.45
SSSCA1-207ENST00000533115 UNC13AQ9UPW8 1703 aa61.33■■■■■ 7.41
SSSCA1-207ENST00000533115 PABPN1Q86U42 306 aaKnown RBP eCLIP61.15■■■■■ 7.38
SSSCA1-207ENST00000533115 BICRAQ9NZM4 1560 aa60.89■■■■■ 7.34
SSSCA1-207ENST00000533115 DNAJC5BQ9UF47 199 aa60.63■■■■■ 7.3
SSSCA1-207ENST00000533115 SCRIBQ14160 1630 aa60.56■■■■■ 7.28
SSSCA1-207ENST00000533115 SHROOM4Q9ULL8 1493 aa60.21■■■■■ 7.23
SSSCA1-207ENST00000533115 EIF4G1Q04637 1599 aaKnown RBP59.34■■■■■ 7.09
SSSCA1-207ENST00000533115 CC2D2AQ9P2K1 1620 aa59.22■■■■■ 7.07
SSSCA1-207ENST00000533115 CECR2Q9BXF3 1484 aa58.93■■■■■ 7.02
SSSCA1-207ENST00000533115 SMARCA4P51532 1647 aa57.87■■■■■ 6.86
SSSCA1-207ENST00000533115 NCAPD3P42695 1498 aa57.76■■■■■ 6.84
SSSCA1-207ENST00000533115 BAZ1AQ9NRL2 1556 aaPredicted RBP57.74■■■■■ 6.83
SSSCA1-207ENST00000533115 ATAD2BQ9ULI0 1458 aa57.71■■■■■ 6.83
SSSCA1-207ENST00000533115 SMARCA2P51531 1590 aa57.61■■■■■ 6.81
SSSCA1-207ENST00000533115 HMGXB3Q12766 1538 aa57.41■■■■■ 6.78
SSSCA1-207ENST00000533115 MROH2BQ7Z745 1585 aa57.37■■■■■ 6.77
SSSCA1-207ENST00000533115 PEG3Q9GZU2 1588 aa57.32■■■■■ 6.77
SSSCA1-207ENST00000533115 BAZ1BQ9UIG0 1483 aaKnown RBP57.21■■■■■ 6.75
SSSCA1-207ENST00000533115 WIZO95785 1651 aa56.72■■■■■ 6.67
SSSCA1-207ENST00000533115 RSF1Q96T23 1441 aaPredicted RBP56.54■■■■■ 6.64
SSSCA1-207ENST00000533115 NESP48681 1621 aa56.53■■■■■ 6.64
SSSCA1-207ENST00000533115 ERCC6Q03468 1493 aa56.51■■■■■ 6.64
SSSCA1-207ENST00000533115 LAMC3Q9Y6N6 1575 aa56.3■■■■■ 6.6
SSSCA1-207ENST00000533115 CUX2O14529 1486 aa56.1■■■■■ 6.57
SSSCA1-207ENST00000533115 TOP2AP11388 1531 aaKnown RBP56.09■■■■■ 6.57
SSSCA1-207ENST00000533115 CADPSQ9ULU8 1353 aa56.05■■■■■ 6.56
SSSCA1-207ENST00000533115 PDS5BQ9NTI5 1447 aa55.97■■■■■ 6.55
SSSCA1-207ENST00000533115 KIF21AQ7Z4S6 1674 aa55.83■■■■■ 6.53
SSSCA1-207ENST00000533115 THOC2Q8NI27 1593 aaKnown RBP55.78■■■■■ 6.52
SSSCA1-207ENST00000533115 CFTRP13569 1480 aa55.61■■■■■ 6.49
SSSCA1-207ENST00000533115 CCDC88BA6NC98 1476 aa55.45■■■■■ 6.47
SSSCA1-207ENST00000533115 FANCD2Q9BXW9 1451 aa55.41■■■■■ 6.46
SSSCA1-207ENST00000533115 MRC2Q9UBG0 1479 aa55.41■■■■■ 6.46
SSSCA1-207ENST00000533115 CEP164Q9UPV0 1460 aa55.37■■■■■ 6.45
SSSCA1-207ENST00000533115 WDR62O43379 1518 aa55.24■■■■■ 6.43
SSSCA1-207ENST00000533115 PRDM2Q13029 1718 aa55.11■■■■■ 6.41
SSSCA1-207ENST00000533115 DNAJC5Q9H3Z4 198 aa55.01■■■■■ 6.4
SSSCA1-207ENST00000533115 URB2Q14146 1524 aaKnown RBP54.88■■■■■ 6.38
SSSCA1-207ENST00000533115 SUPT5HO00267 1087 aaKnown RBP54.73■■■■■ 6.35
SSSCA1-207ENST00000533115 TOPBP1Q92547 1522 aa54.46■■■■■ 6.31
SSSCA1-207ENST00000533115 ABCC8Q09428 1581 aa54.42■■■■■ 6.3
SSSCA1-207ENST00000533115 DNMBPQ6XZF7 1577 aa54.34■■■■■ 6.29
SSSCA1-207ENST00000533115 IFT140Q96RY7 1462 aa54.25■■■■■ 6.28
SSSCA1-207ENST00000533115 ZNF608Q9ULD9 1512 aaPredicted RBP54.05■■■■■ 6.24
SSSCA1-207ENST00000533115 POLA1P09884 1462 aaPredicted RBP53.96■■■■■ 6.23
SSSCA1-207ENST00000533115 TARBP1Q13395 1621 aaKnown RBP53.9■■■■■ 6.22
SSSCA1-207ENST00000533115 CUX1P39880 1505 aa53.85■■■■■ 6.21
SSSCA1-207ENST00000533115 EIF4G3O43432 1585 aaKnown RBP53.8■■■■■ 6.2
SSSCA1-207ENST00000533115 FGD5Q6ZNL6 1462 aa53.76■■■■■ 6.2
SSSCA1-207ENST00000533115 RAD54L2Q9Y4B4 1467 aa53.75■■■■■ 6.19
SSSCA1-207ENST00000533115 SOGA1O94964 1423 aa53.75■■■■■ 6.19
SSSCA1-207ENST00000533115 OSCARQ8IYS5 282 aa53.7■■■■■ 6.19
SSSCA1-207ENST00000533115 AQRO60306 1485 aaKnown RBP eCLIP53.7■■■■■ 6.194e-6■■■■■ 31
SSSCA1-207ENST00000533115 TDRD9Q8NDG6 1382 aaKnown RBP53.51■■■■■ 6.16
SSSCA1-207ENST00000533115 WDR97A6NE52 1622 aa53.44■■■■■ 6.15
SSSCA1-207ENST00000533115 WRNQ14191 1432 aaPredicted RBP eCLIP53.32■■■■■ 6.13
SSSCA1-207ENST00000533115 TOP2BQ02880 1626 aa53.25■■■■■ 6.12
SSSCA1-207ENST00000533115 BIVM-ERCC5R4GMW8 1640 aa53.24■■■■■ 6.11
SSSCA1-207ENST00000533115 CHD1O14646 1710 aa53.22■■■■■ 6.11
SSSCA1-207ENST00000533115 ABCA10Q8WWZ4 1543 aa53.22■■■■■ 6.11
SSSCA1-207ENST00000533115 SYNJ1O43426 1573 aa53.21■■■■■ 6.11
SSSCA1-207ENST00000533115 GRIN2BQ13224 1484 aa53.17■■■■■ 6.1
SSSCA1-207ENST00000533115 SNAPC4Q5SXM2 1469 aa53.17■■■■■ 6.1
SSSCA1-207ENST00000533115 FBLN2P98095 1184 aa53.16■■■■■ 6.1
SSSCA1-207ENST00000533115 GAPVD1Q14C86 1478 aa53.11■■■■■ 6.09
SSSCA1-207ENST00000533115 MAGI1Q96QZ7 1491 aaPredicted RBP53.08■■■■■ 6.09
SSSCA1-207ENST00000533115 ABCA5Q8WWZ7 1642 aa53.03■■■■■ 6.08
SSSCA1-207ENST00000533115 PBRM1Q86U86 1689 aa53■■■■■ 6.08
SSSCA1-207ENST00000533115 TRIM41Q8WV44 630 aa52.98■■■■■ 6.07
SSSCA1-207ENST00000533115 CHMP7Q8WUX9 453 aaPredicted RBP52.94■■■■■ 6.07
SSSCA1-207ENST00000533115 SYNJ2O15056 1496 aa52.89■■■■■ 6.06
SSSCA1-207ENST00000533115 RIMBP3CA6NJZ7 1639 aa52.88■■■■■ 6.05
SSSCA1-207ENST00000533115 RIMBP3BA6NNM3 1639 aa52.88■■■■■ 6.05
SSSCA1-207ENST00000533115 RIMBP3Q9UFD9 1639 aa52.88■■■■■ 6.05
SSSCA1-207ENST00000533115 ARHGEF11O15085 1522 aa52.81■■■■■ 6.05
SSSCA1-207ENST00000533115 CLASP1Q7Z460 1538 aa52.65■■■■■ 6.02
SSSCA1-207ENST00000533115 ERICH3Q5RHP9 1530 aa52.56■■■■■ 6.01
SSSCA1-207ENST00000533115 ADAMTS12P58397 1594 aa52.56■■■■■ 6
SSSCA1-207ENST00000533115 GRIN2AQ12879 1464 aa52.48■■■■■ 5.99
SSSCA1-207ENST00000533115 FHAD1B1AJZ9 1412 aa52.48■■■■■ 5.99
SSSCA1-207ENST00000533115 CYB5RLQ6IPT4 315 aa52.38■■■■■ 5.98
SSSCA1-207ENST00000533115 ARAP1Q96P48 1450 aa52.36■■■■■ 5.97
SSSCA1-207ENST00000533115 NUP160Q12769 1436 aa52.27■■■■■ 5.96
SSSCA1-207ENST00000533115 KIF27Q86VH2 1401 aa52.24■■■■■ 5.95
SSSCA1-207ENST00000533115 CEP170Q5SW79 1584 aa52.24■■■■■ 5.95
SSSCA1-207ENST00000533115 IGF1RP08069 1367 aa52.12■■■■■ 5.93
SSSCA1-207ENST00000533115 CUL7Q14999 1698 aa51.97■■■■■ 5.91
SSSCA1-207ENST00000533115 SHROOM2Q13796 1616 aa51.93■■■■■ 5.9
SSSCA1-207ENST00000533115 ERCC6L2Q5T890 1561 aa51.88■■■■■ 5.9
SSSCA1-207ENST00000533115 RUSC2Q8N2Y8 1516 aa51.8■■■■■ 5.88
SSSCA1-207ENST00000533115 CARMIL1Q5VZK9 1371 aa51.79■■■■■ 5.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms