RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ZMYM4Q5VZL5 1548 aa28.96■■■□□ 2.23
PCF11-206ENST00000533018 MADDQ8WXG6 1647 aa28.96■■■□□ 2.23
PCF11-206ENST00000533018 PCF11O94913 1555 aaKnown RBP28.95■■■□□ 2.22
PCF11-206ENST00000533018 POGZQ7Z3K3 1410 aa28.94■■■□□ 2.22
PCF11-206ENST00000533018 CASKIN1Q8WXD9 1431 aa28.94■■■□□ 2.22
PCF11-206ENST00000533018 YEATS2Q9ULM3 1422 aa28.94■■■□□ 2.22
PCF11-206ENST00000533018 MAGI2Q86UL8 1455 aa28.93■■■□□ 2.22
PCF11-206ENST00000533018 ARHGAP5Q13017 1502 aa28.93■■■□□ 2.22
PCF11-206ENST00000533018 CCDC18Q5T9S5 1454 aa28.91■■■□□ 2.22
PCF11-206ENST00000533018 RIMS1Q86UR5 1692 aaKnown RBP28.89■■■□□ 2.21
PCF11-206ENST00000533018 MLECQ14165 292 aa28.88■■■□□ 2.21
PCF11-206ENST00000533018 PLPPR3Q6T4P5 718 aa28.88■■■□□ 2.21
PCF11-206ENST00000533018 MYT1LQ9UL68 1186 aa28.88■■■□□ 2.21
PCF11-206ENST00000533018 SIGLEC1Q9BZZ2 1709 aa28.84■■■□□ 2.21
PCF11-206ENST00000533018 FYCO1Q9BQS8 1478 aa28.83■■■□□ 2.21
PCF11-206ENST00000533018 CDC42BPBQ9Y5S2 1711 aa28.83■■■□□ 2.21
PCF11-206ENST00000533018 AFAP1Q8N556 730 aa28.82■■■□□ 2.2
PCF11-206ENST00000533018 ZNF518AQ6AHZ1 1483 aa28.81■■■□□ 2.2
PCF11-206ENST00000533018 ATP10AO60312 1499 aa28.8■■■□□ 2.2
PCF11-206ENST00000533018 ILDR1Q86SU0 546 aaPredicted RBP28.79■■■□□ 2.2
PCF11-206ENST00000533018 C9orf84Q5VXU9 1444 aa28.77■■■□□ 2.2
PCF11-206ENST00000533018 PREX2Q70Z35 1606 aa28.76■■■□□ 2.2
PCF11-206ENST00000533018 FER1L4A9Z1Z3 1794 aa28.75■■■□□ 2.19
PCF11-206ENST00000533018 CDC42BPAQ5VT25 1732 aa28.72■■■□□ 2.19
PCF11-206ENST00000533018 KDM5CP41229 1560 aa28.71■■■□□ 2.19
PCF11-206ENST00000533018 ZNF777Q9ULD5 760 aaPredicted RBP28.71■■■□□ 2.19
PCF11-206ENST00000533018 LMTK3Q96Q04 1460 aa28.68■■■□□ 2.18
PCF11-206ENST00000533018 ABCC1P33527 1531 aa28.68■■■□□ 2.18
PCF11-206ENST00000533018 ITSN2Q9NZM3 1697 aa28.66■■■□□ 2.18
PCF11-206ENST00000533018 TRAPPC8Q9Y2L5 1435 aa28.66■■■□□ 2.18
PCF11-206ENST00000533018 ARHGEF12Q9NZN5 1544 aa28.65■■■□□ 2.18
PCF11-206ENST00000533018 DIP2CQ9Y2E4 1556 aa28.64■■■□□ 2.18
PCF11-206ENST00000533018 MLH3Q9UHC1 1453 aa28.63■■■□□ 2.17
PCF11-206ENST00000533018 ABCA6Q8N139 1617 aa28.61■■■□□ 2.17
PCF11-206ENST00000533018 HSPA2P54652 639 aa28.61■■■□□ 2.17
PCF11-206ENST00000533018 MTUS2Q5JR59 1369 aa28.61■■■□□ 2.17
PCF11-206ENST00000533018 GPATCH8Q9UKJ3 1502 aaKnown RBP28.59■■■□□ 2.17
PCF11-206ENST00000533018 CEBPAP49715 358 aaPredicted RBP28.58■■■□□ 2.17
PCF11-206ENST00000533018 CFDP1Q9UEE9 299 aaPredicted RBP28.58■■■□□ 2.17
PCF11-206ENST00000533018 CCNB3Q8WWL7 1395 aa28.58■■■□□ 2.17
PCF11-206ENST00000533018 CEP162Q5TB80 1403 aa28.57■■■□□ 2.16
PCF11-206ENST00000533018 HNRNPMP52272 730 aaKnown RBP eCLIP28.56■■■□□ 2.16
PCF11-206ENST00000533018 SAMD9LQ8IVG5 1584 aa28.56■■■□□ 2.16
PCF11-206ENST00000533018 ESF1Q9H501 851 aaKnown RBP28.55■■■□□ 2.16
PCF11-206ENST00000533018 REREQ9P2R6 1566 aa28.54■■■□□ 2.16
PCF11-206ENST00000533018 SYCP2Q9BX26 1530 aa28.54■■■□□ 2.16
PCF11-206ENST00000533018 KIDINS220Q9ULH0 1771 aa28.54■■■□□ 2.16
PCF11-206ENST00000533018 SPAG9O60271 1321 aaKnown RBP28.5■■■□□ 2.15
PCF11-206ENST00000533018 PREX1Q8TCU6 1659 aa28.48■■■□□ 2.15
PCF11-206ENST00000533018 AGLP35573 1532 aa28.47■■■□□ 2.15
PCF11-206ENST00000533018 PLEKHH2Q8IVE3 1493 aa28.46■■■□□ 2.15
PCF11-206ENST00000533018 EHBP1L1Q8N3D4 1523 aa28.44■■■□□ 2.14
PCF11-206ENST00000533018 KIAA1107Q9UPP5 1409 aa28.43■■■□□ 2.14
PCF11-206ENST00000533018 SETD1BQ9UPS6 1966 aaKnown RBP28.42■■■□□ 2.14
PCF11-206ENST00000533018 LOC105371045A0A1W2PR82 267 aa28.42■■■□□ 2.14
PCF11-206ENST00000533018 TIAM1Q13009 1591 aa28.41■■■□□ 2.14
PCF11-206ENST00000533018 SUPT6HQ7KZ85 1726 aaKnown RBP28.4■■■□□ 2.14
PCF11-206ENST00000533018 ATP7AQ04656 1500 aa28.4■■■□□ 2.14
PCF11-206ENST00000533018 C3P01024 1663 aa28.4■■■□□ 2.14
PCF11-206ENST00000533018 FBXO41Q8TF61 875 aa28.4■■■□□ 2.14
PCF11-206ENST00000533018 ZNF644Q9H582 1327 aaPredicted RBP28.4■■■□□ 2.14
PCF11-206ENST00000533018 UHRF1BP1Q6BDS2 1440 aa28.38■■■□□ 2.13
PCF11-206ENST00000533018 INO80Q9ULG1 1556 aaPredicted RBP28.34■■■□□ 2.13
PCF11-206ENST00000533018 CNTLNQ9NXG0 1405 aa28.34■■■□□ 2.13
PCF11-206ENST00000533018 A2MP01023 1474 aa28.32■■■□□ 2.12
PCF11-206ENST00000533018 GGT6Q6P531 493 aa28.29■■■□□ 2.12
PCF11-206ENST00000533018 NCOA2Q15596 1464 aa28.28■■■□□ 2.12
PCF11-206ENST00000533018 ADGBQ8N7X0 1667 aa28.26■■■□□ 2.12
PCF11-206ENST00000533018 DMRT2Q9Y5R5 561 aa28.26■■■□□ 2.11
PCF11-206ENST00000533018 MBD5Q9P267 1494 aa28.26■■■□□ 2.11
PCF11-206ENST00000533018 VPS8Q8N3P4 1428 aa28.26■■■□□ 2.11
PCF11-206ENST00000533018 PLXNC1O60486 1568 aa28.25■■■□□ 2.11
PCF11-206ENST00000533018 MROH2AA6NES4 1674 aa28.25■■■□□ 2.11
PCF11-206ENST00000533018 ZMYM3Q14202 1370 aa28.24■■■□□ 2.11
PCF11-206ENST00000533018 STRCQ7RTU9 1775 aa28.24■■■□□ 2.11
PCF11-206ENST00000533018 CLTCQ00610 1675 aaKnown RBP28.24■■■□□ 2.11
PCF11-206ENST00000533018 CAMSAP2Q08AD1 1489 aa28.21■■■□□ 2.11
PCF11-206ENST00000533018 CERKQ8TCT0 537 aa28.21■■■□□ 2.11
PCF11-206ENST00000533018 RTEL1-TNFRSF6BF6WH68 1400 aa28.19■■■□□ 2.1
PCF11-206ENST00000533018 CCDC141Q6ZP82 1450 aa28.18■■■□□ 2.1
PCF11-206ENST00000533018 LRRC9Q6ZRR7 1453 aa28.17■■■□□ 2.1
PCF11-206ENST00000533018 RSPH4AQ5TD94 716 aa28.17■■■□□ 2.1
PCF11-206ENST00000533018 NPATQ14207 1427 aa28.17■■■□□ 2.1
PCF11-206ENST00000533018 DHX29Q7Z478 1369 aaKnown RBP28.14■■■□□ 2.1
PCF11-206ENST00000533018 TSPY4P0CV99 314 aa28.13■■■□□ 2.09
PCF11-206ENST00000533018 TSPY10P0CW01 314 aa28.13■■■□□ 2.09
PCF11-206ENST00000533018 PPP6R1Q9UPN7 881 aa28.13■■■□□ 2.09
PCF11-206ENST00000533018 KIF3BO15066 747 aa28.12■■■□□ 2.09
PCF11-206ENST00000533018 KANK4Q5T7N3 995 aaPredicted RBP28.1■■■□□ 2.09
PCF11-206ENST00000533018 CAMSAP1Q5T5Y3 1602 aa28.07■■■□□ 2.08
PCF11-206ENST00000533018 PTPRTO14522 1441 aa28.07■■■□□ 2.08
PCF11-206ENST00000533018 PTPRKQ15262 1439 aa28.07■■■□□ 2.08
PCF11-206ENST00000533018 NCOA1Q15788 1441 aa28.06■■■□□ 2.08
PCF11-206ENST00000533018 ARHGEF5Q12774 1597 aa28.06■■■□□ 2.08
PCF11-206ENST00000533018 APLP2Q06481 763 aa28.05■■■□□ 2.08
PCF11-206ENST00000533018 MAP3K1Q13233 1512 aa28.05■■■□□ 2.08
PCF11-206ENST00000533018 MYO3AQ8NEV4 1616 aa28.05■■■□□ 2.08
PCF11-206ENST00000533018 NCKAP5LQ9HCH0 1330 aa28.01■■■□□ 2.07
PCF11-206ENST00000533018 WASHC2CQ9Y4E1 1318 aa28.01■■■□□ 2.07
PCF11-206ENST00000533018 ZNF142P52746 1687 aaPredicted RBP27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms