RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 SCAPERQ9BY12 1400 aa27.5■■□□□ 1.99
CPSF1-207ENST00000531727 MAGI2Q86UL8 1455 aa27.49■■□□□ 1.99
CPSF1-207ENST00000531727 POGZQ7Z3K3 1410 aa27.49■■□□□ 1.99
CPSF1-207ENST00000531727 CASKIN1Q8WXD9 1431 aa27.49■■□□□ 1.99
CPSF1-207ENST00000531727 MADDQ8WXG6 1647 aa27.48■■□□□ 1.99
CPSF1-207ENST00000531727 CCDC18Q5T9S5 1454 aa27.46■■□□□ 1.99
CPSF1-207ENST00000531727 EFCAB2Q5VUJ9 269 aa27.46■■□□□ 1.99
CPSF1-207ENST00000531727 YEATS2Q9ULM3 1422 aa27.45■■□□□ 1.98
CPSF1-207ENST00000531727 ARHGAP5Q13017 1502 aa27.41■■□□□ 1.98
CPSF1-207ENST00000531727 SIGLEC1Q9BZZ2 1709 aa27.41■■□□□ 1.98
CPSF1-207ENST00000531727 FYCO1Q9BQS8 1478 aa27.4■■□□□ 1.98
CPSF1-207ENST00000531727 RIMS1Q86UR5 1692 aaKnown RBP27.39■■□□□ 1.97
CPSF1-207ENST00000531727 CDC42BPBQ9Y5S2 1711 aa27.37■■□□□ 1.97
CPSF1-207ENST00000531727 PREX2Q70Z35 1606 aa27.35■■□□□ 1.97
CPSF1-207ENST00000531727 ZNF518AQ6AHZ1 1483 aa27.35■■□□□ 1.97
CPSF1-207ENST00000531727 KDM5CP41229 1560 aa27.33■■□□□ 1.97
CPSF1-207ENST00000531727 ATP10AO60312 1499 aa27.32■■□□□ 1.96
CPSF1-207ENST00000531727 C9orf84Q5VXU9 1444 aa27.3■■□□□ 1.96
CPSF1-207ENST00000531727 CDC42BPAQ5VT25 1732 aa27.27■■□□□ 1.96
CPSF1-207ENST00000531727 AFAP1Q8N556 730 aa27.27■■□□□ 1.96
CPSF1-207ENST00000531727 FER1L4A9Z1Z3 1794 aa27.27■■□□□ 1.96
CPSF1-207ENST00000531727 ABCC1P33527 1531 aa27.26■■□□□ 1.96
CPSF1-207ENST00000531727 ITSN2Q9NZM3 1697 aa27.24■■□□□ 1.95
CPSF1-207ENST00000531727 MLECQ14165 292 aa27.23■■□□□ 1.95
CPSF1-207ENST00000531727 ARHGEF12Q9NZN5 1544 aa27.22■■□□□ 1.95
CPSF1-207ENST00000531727 LMTK3Q96Q04 1460 aa27.22■■□□□ 1.95
CPSF1-207ENST00000531727 DIP2CQ9Y2E4 1556 aa27.22■■□□□ 1.95
CPSF1-207ENST00000531727 MLH3Q9UHC1 1453 aa27.2■■□□□ 1.95
CPSF1-207ENST00000531727 TRAPPC8Q9Y2L5 1435 aa27.19■■□□□ 1.94
CPSF1-207ENST00000531727 ILDR1Q86SU0 546 aaPredicted RBP27.19■■□□□ 1.94
CPSF1-207ENST00000531727 REREQ9P2R6 1566 aa27.18■■□□□ 1.94
CPSF1-207ENST00000531727 MYT1LQ9UL68 1186 aa27.18■■□□□ 1.94
CPSF1-207ENST00000531727 ABCA6Q8N139 1617 aa27.18■■□□□ 1.94
CPSF1-207ENST00000531727 PLPPR3Q6T4P5 718 aa27.15■■□□□ 1.94
CPSF1-207ENST00000531727 GPATCH8Q9UKJ3 1502 aaKnown RBP27.15■■□□□ 1.94
CPSF1-207ENST00000531727 SAMD9LQ8IVG5 1584 aa27.14■■□□□ 1.94
CPSF1-207ENST00000531727 CEP162Q5TB80 1403 aa27.12■■□□□ 1.93
CPSF1-207ENST00000531727 KIDINS220Q9ULH0 1771 aa27.12■■□□□ 1.93
CPSF1-207ENST00000531727 MTUS2Q5JR59 1369 aa27.1■■□□□ 1.93
CPSF1-207ENST00000531727 ZNF777Q9ULD5 760 aaPredicted RBP27.09■■□□□ 1.93
CPSF1-207ENST00000531727 SYCP2Q9BX26 1530 aa27.09■■□□□ 1.93
CPSF1-207ENST00000531727 AGLP35573 1532 aa27.08■■□□□ 1.93
CPSF1-207ENST00000531727 CCNB3Q8WWL7 1395 aa27.07■■□□□ 1.92
CPSF1-207ENST00000531727 EHBP1L1Q8N3D4 1523 aa27.04■■□□□ 1.92
CPSF1-207ENST00000531727 HSPA2P54652 639 aa27.03■■□□□ 1.92
CPSF1-207ENST00000531727 PLEKHH2Q8IVE3 1493 aa27.03■■□□□ 1.92
CPSF1-207ENST00000531727 CFDP1Q9UEE9 299 aaPredicted RBP27.03■■□□□ 1.92
CPSF1-207ENST00000531727 KIAA1107Q9UPP5 1409 aa27.03■■□□□ 1.92
CPSF1-207ENST00000531727 PREX1Q8TCU6 1659 aa27.02■■□□□ 1.92
CPSF1-207ENST00000531727 HNRNPMP52272 730 aaKnown RBP eCLIP27.01■■□□□ 1.91
CPSF1-207ENST00000531727 TIAM1Q13009 1591 aa27.01■■□□□ 1.91
CPSF1-207ENST00000531727 CEBPAP49715 358 aaPredicted RBP27■■□□□ 1.91
CPSF1-207ENST00000531727 SPAG9O60271 1321 aaKnown RBP26.99■■□□□ 1.91
CPSF1-207ENST00000531727 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
CPSF1-207ENST00000531727 ATP7AQ04656 1500 aa26.96■■□□□ 1.91
CPSF1-207ENST00000531727 C3P01024 1663 aa26.96■■□□□ 1.91
CPSF1-207ENST00000531727 ESF1Q9H501 851 aaKnown RBP26.92■■□□□ 1.9
CPSF1-207ENST00000531727 SUPT6HQ7KZ85 1726 aaKnown RBP26.9■■□□□ 1.9
CPSF1-207ENST00000531727 CNTLNQ9NXG0 1405 aa26.9■■□□□ 1.9
CPSF1-207ENST00000531727 PLXNC1O60486 1568 aa26.89■■□□□ 1.9
CPSF1-207ENST00000531727 SETD1BQ9UPS6 1966 aaKnown RBP26.89■■□□□ 1.89
CPSF1-207ENST00000531727 UHRF1BP1Q6BDS2 1440 aa26.89■■□□□ 1.89
CPSF1-207ENST00000531727 ZNF644Q9H582 1327 aaPredicted RBP26.89■■□□□ 1.89
CPSF1-207ENST00000531727 FBXO41Q8TF61 875 aa26.87■■□□□ 1.89
CPSF1-207ENST00000531727 A2MP01023 1474 aa26.87■■□□□ 1.89
CPSF1-207ENST00000531727 MBD5Q9P267 1494 aa26.87■■□□□ 1.89
CPSF1-207ENST00000531727 MROH2AA6NES4 1674 aa26.86■■□□□ 1.89
CPSF1-207ENST00000531727 LOC105371045A0A1W2PR82 267 aa26.86■■□□□ 1.89
CPSF1-207ENST00000531727 NCOA2Q15596 1464 aa26.86■■□□□ 1.89
CPSF1-207ENST00000531727 ADGBQ8N7X0 1667 aa26.85■■□□□ 1.89
CPSF1-207ENST00000531727 VPS8Q8N3P4 1428 aa26.84■■□□□ 1.89
CPSF1-207ENST00000531727 STRCQ7RTU9 1775 aa26.8■■□□□ 1.88
CPSF1-207ENST00000531727 RTEL1-TNFRSF6BF6WH68 1400 aa26.8■■□□□ 1.88
CPSF1-207ENST00000531727 CAMSAP2Q08AD1 1489 aa26.78■■□□□ 1.88
CPSF1-207ENST00000531727 CLTCQ00610 1675 aaKnown RBP26.78■■□□□ 1.88
CPSF1-207ENST00000531727 ZMYM3Q14202 1370 aa26.76■■□□□ 1.87
CPSF1-207ENST00000531727 CCDC141Q6ZP82 1450 aa26.75■■□□□ 1.87
CPSF1-207ENST00000531727 LRRC9Q6ZRR7 1453 aa26.75■■□□□ 1.87
CPSF1-207ENST00000531727 NPATQ14207 1427 aa26.75■■□□□ 1.87
CPSF1-207ENST00000531727 GGT6Q6P531 493 aa26.72■■□□□ 1.87
CPSF1-207ENST00000531727 DMRT2Q9Y5R5 561 aa26.72■■□□□ 1.87
CPSF1-207ENST00000531727 MAP3K1Q13233 1512 aa26.71■■□□□ 1.87
CPSF1-207ENST00000531727 RSPH4AQ5TD94 716 aa26.7■■□□□ 1.86
CPSF1-207ENST00000531727 ARHGEF5Q12774 1597 aa26.7■■□□□ 1.86
CPSF1-207ENST00000531727 DHX29Q7Z478 1369 aaKnown RBP26.7■■□□□ 1.86
CPSF1-207ENST00000531727 PPP6R1Q9UPN7 881 aa26.68■■□□□ 1.86
CPSF1-207ENST00000531727 CERKQ8TCT0 537 aa26.67■■□□□ 1.86
CPSF1-207ENST00000531727 PTPRTO14522 1441 aa26.65■■□□□ 1.86
CPSF1-207ENST00000531727 PTPRKQ15262 1439 aa26.65■■□□□ 1.86
CPSF1-207ENST00000531727 MYO3AQ8NEV4 1616 aa26.64■■□□□ 1.85
CPSF1-207ENST00000531727 NCOA1Q15788 1441 aa26.64■■□□□ 1.85
CPSF1-207ENST00000531727 ZNF142P52746 1687 aaPredicted RBP26.63■■□□□ 1.85
CPSF1-207ENST00000531727 KANK4Q5T7N3 995 aaPredicted RBP26.62■■□□□ 1.85
CPSF1-207ENST00000531727 CAMSAP1Q5T5Y3 1602 aa26.61■■□□□ 1.85
CPSF1-207ENST00000531727 KIF3BO15066 747 aa26.59■■□□□ 1.85
CPSF1-207ENST00000531727 TSPY4P0CV99 314 aa26.59■■□□□ 1.85
CPSF1-207ENST00000531727 TSPY10P0CW01 314 aa26.59■■□□□ 1.85
CPSF1-207ENST00000531727 FAM135AQ9P2D6 1515 aa26.59■■□□□ 1.85
CPSF1-207ENST00000531727 MYOM3Q5VTT5 1437 aa26.57■■□□□ 1.84
CPSF1-207ENST00000531727 MAST1Q9Y2H9 1570 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms