RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 CDK13Q14004 1512 aaKnown RBP15.3■□□□□ 0.04
NEDD8-206ENST00000531430 CFAP74Q9C0B2 1584 aa15.3■□□□□ 0.04
NEDD8-206ENST00000531430 TTC37Q6PGP7 1564 aa15.29■□□□□ 0.04
NEDD8-206ENST00000531430 EFCAB5A4FU69 1503 aa15.29■□□□□ 0.04
NEDD8-206ENST00000531430 PLCH2O75038 1416 aa15.29■□□□□ 0.04
NEDD8-206ENST00000531430 AFAP1Q8N556 730 aa15.29■□□□□ 0.04
NEDD8-206ENST00000531430 HECW1Q76N89 1606 aa15.28■□□□□ 0.04
NEDD8-206ENST00000531430 ESF1Q9H501 851 aaKnown RBP15.28■□□□□ 0.04
NEDD8-206ENST00000531430 MAGI2Q86UL8 1455 aa15.27■□□□□ 0.04
NEDD8-206ENST00000531430 ATP10AO60312 1499 aa15.27■□□□□ 0.03
NEDD8-206ENST00000531430 DMRT2Q9Y5R5 561 aa15.26■□□□□ 0.03
NEDD8-206ENST00000531430 SIGLEC1Q9BZZ2 1709 aa15.24■□□□□ 0.03
NEDD8-206ENST00000531430 FER1L4A9Z1Z3 1794 aa15.24■□□□□ 0.03
NEDD8-206ENST00000531430 ZMYM4Q5VZL5 1548 aa15.23■□□□□ 0.03
NEDD8-206ENST00000531430 DISP3Q9P2K9 1392 aa15.22■□□□□ 0.03
NEDD8-206ENST00000531430 C9orf84Q5VXU9 1444 aa15.21■□□□□ 0.03
NEDD8-206ENST00000531430 FMN1Q68DA7 1419 aa15.19■□□□□ 0.02
NEDD8-206ENST00000531430 ARHGAP5Q13017 1502 aa15.19■□□□□ 0.02
NEDD8-206ENST00000531430 ZNF777Q9ULD5 760 aaPredicted RBP15.18■□□□□ 0.02
NEDD8-206ENST00000531430 ARHGEF12Q9NZN5 1544 aa15.17■□□□□ 0.02
NEDD8-206ENST00000531430 CLIP1P30622 1438 aa15.17■□□□□ 0.02
NEDD8-206ENST00000531430 UHRF1BP1Q6BDS2 1440 aa15.17■□□□□ 0.02
NEDD8-206ENST00000531430 ILDR2Q71H61 639 aa15.16■□□□□ 0.02
NEDD8-206ENST00000531430 MYO5CQ9NQX4 1742 aa15.16■□□□□ 0.02
NEDD8-206ENST00000531430 ZNF518AQ6AHZ1 1483 aa15.14■□□□□ 0.01
NEDD8-206ENST00000531430 TROQ12816 1431 aaPredicted RBP15.14■□□□□ 0.01
NEDD8-206ENST00000531430 KIF14Q15058 1648 aa15.14■□□□□ 0.01
NEDD8-206ENST00000531430 PREX1Q8TCU6 1659 aa15.13■□□□□ 0.01
NEDD8-206ENST00000531430 ARHGAP35Q9NRY4 1499 aa15.13■□□□□ 0.01
NEDD8-206ENST00000531430 SETD1BQ9UPS6 1966 aaKnown RBP15.12■□□□□ 0.01
NEDD8-206ENST00000531430 TRAPPC8Q9Y2L5 1435 aa15.09■□□□□ 0.01
NEDD8-206ENST00000531430 STRCQ7RTU9 1775 aa15.08■□□□□ 0.01
NEDD8-206ENST00000531430 SOCS7O14512 581 aa15.08■□□□□ 0
NEDD8-206ENST00000531430 HNRNPMP52272 730 aaKnown RBP eCLIP15.08■□□□□ 0
NEDD8-206ENST00000531430 CHIC1Q5VXU3 224 aa15.07■□□□□ 0
NEDD8-206ENST00000531430 NCKAP5LQ9HCH0 1330 aa15.07■□□□□ 0
NEDD8-206ENST00000531430 DIP2CQ9Y2E4 1556 aa15.06■□□□□ 0
NEDD8-206ENST00000531430 GGT6Q6P531 493 aa15.05■□□□□ -0
NEDD8-206ENST00000531430 PTPRTO14522 1441 aa15.05■□□□□ -0
NEDD8-206ENST00000531430 MLH3Q9UHC1 1453 aa15.05■□□□□ -0
NEDD8-206ENST00000531430 SPATA31D1Q6ZQQ2 1576 aa15.05■□□□□ -0
NEDD8-206ENST00000531430 KDM5CP41229 1560 aa15.04■□□□□ -0
NEDD8-206ENST00000531430 SPAG9O60271 1321 aaKnown RBP15.04■□□□□ -0
NEDD8-206ENST00000531430 CDC42BPBQ9Y5S2 1711 aa15.03■□□□□ -0
NEDD8-206ENST00000531430 C3P01024 1663 aa15.03■□□□□ -0
NEDD8-206ENST00000531430 UBAP1LF5GYI3 381 aa15.03■□□□□ -0
NEDD8-206ENST00000531430 ABCA6Q8N139 1617 aa15.03■□□□□ -0
NEDD8-206ENST00000531430 ZMYM3Q14202 1370 aa15.02■□□□□ -0
NEDD8-206ENST00000531430 CFDP1Q9UEE9 299 aaPredicted RBP15.01□□□□□ -0.01
NEDD8-206ENST00000531430 LRRIQ1Q96JM4 1722 aa15□□□□□ -0.01
NEDD8-206ENST00000531430 CNTLNQ9NXG0 1405 aa15□□□□□ -0.01
NEDD8-206ENST00000531430 CASKIN1Q8WXD9 1431 aa14.99□□□□□ -0.01
NEDD8-206ENST00000531430 ZNF335Q9H4Z2 1342 aaPredicted RBP14.98□□□□□ -0.01
NEDD8-206ENST00000531430 SCAF1Q9H7N4 1312 aaKnown RBP14.98□□□□□ -0.01
NEDD8-206ENST00000531430 AGLP35573 1532 aa14.98□□□□□ -0.01
NEDD8-206ENST00000531430 ABCC1P33527 1531 aa14.97□□□□□ -0.01
NEDD8-206ENST00000531430 CCDC18Q5T9S5 1454 aa14.97□□□□□ -0.01
NEDD8-206ENST00000531430 NCOA1Q15788 1441 aa14.97□□□□□ -0.01
NEDD8-206ENST00000531430 REREQ9P2R6 1566 aa14.97□□□□□ -0.01
NEDD8-206ENST00000531430 PREX2Q70Z35 1606 aa14.96□□□□□ -0.01
NEDD8-206ENST00000531430 KIDINS220Q9ULH0 1771 aa14.96□□□□□ -0.01
NEDD8-206ENST00000531430 ITSN2Q9NZM3 1697 aa14.96□□□□□ -0.01
NEDD8-206ENST00000531430 CAMSAP1Q5T5Y3 1602 aa14.95□□□□□ -0.02
NEDD8-206ENST00000531430 SUPT6HQ7KZ85 1726 aaKnown RBP14.95□□□□□ -0.02
NEDD8-206ENST00000531430 PKD2Q13563 968 aa14.94□□□□□ -0.02
NEDD8-206ENST00000531430 LTBP4Q8N2S1 1624 aa14.94□□□□□ -0.02
NEDD8-206ENST00000531430 PIP4K2BP78356 416 aa14.93□□□□□ -0.02
NEDD8-206ENST00000531430 CCNB3Q8WWL7 1395 aa14.93□□□□□ -0.02
NEDD8-206ENST00000531430 SAMD9LQ8IVG5 1584 aa14.93□□□□□ -0.02
NEDD8-206ENST00000531430 CDC42BPAQ5VT25 1732 aa14.92□□□□□ -0.02
NEDD8-206ENST00000531430 PPP6R1Q9UPN7 881 aa14.92□□□□□ -0.02
NEDD8-206ENST00000531430 SYCP2Q9BX26 1530 aa14.92□□□□□ -0.02
NEDD8-206ENST00000531430 GPATCH8Q9UKJ3 1502 aaKnown RBP14.92□□□□□ -0.02
NEDD8-206ENST00000531430 NPATQ14207 1427 aa14.92□□□□□ -0.02
NEDD8-206ENST00000531430 ZNF644Q9H582 1327 aaPredicted RBP14.91□□□□□ -0.02
NEDD8-206ENST00000531430 A2MP01023 1474 aa14.89□□□□□ -0.03
NEDD8-206ENST00000531430 MTUS2Q5JR59 1369 aa14.89□□□□□ -0.03
NEDD8-206ENST00000531430 CLTCQ00610 1675 aaKnown RBP14.89□□□□□ -0.03
NEDD8-206ENST00000531430 FBXO31Q5XUX0 539 aaPredicted RBP14.88□□□□□ -0.03
NEDD8-206ENST00000531430 SENP3Q9H4L4 574 aaPredicted RBP14.88□□□□□ -0.03
NEDD8-206ENST00000531430 KIF3BO15066 747 aa14.87□□□□□ -0.03
NEDD8-206ENST00000531430 IQSEC2Q5JU85 1478 aa14.87□□□□□ -0.03
NEDD8-206ENST00000531430 FYCO1Q9BQS8 1478 aa14.87□□□□□ -0.03
NEDD8-206ENST00000531430 ATP7AQ04656 1500 aa14.87□□□□□ -0.03
NEDD8-206ENST00000531430 PTPRKQ15262 1439 aa14.86□□□□□ -0.03
NEDD8-206ENST00000531430 KIAA1107Q9UPP5 1409 aa14.85□□□□□ -0.03
NEDD8-206ENST00000531430 PLEKHH2Q8IVE3 1493 aa14.85□□□□□ -0.03
NEDD8-206ENST00000531430 TOM1O60784 492 aa14.85□□□□□ -0.03
NEDD8-206ENST00000531430 MROH2AA6NES4 1674 aa14.84□□□□□ -0.03
NEDD8-206ENST00000531430 HSPA1LP34931 641 aa14.84□□□□□ -0.03
NEDD8-206ENST00000531430 WASHC2CQ9Y4E1 1318 aa14.83□□□□□ -0.04
NEDD8-206ENST00000531430 ANKLE2Q86XL3 938 aa14.82□□□□□ -0.04
NEDD8-206ENST00000531430 CEP170BQ9Y4F5 1589 aaPredicted RBP14.81□□□□□ -0.04
NEDD8-206ENST00000531430 THEMISQ8N1K5 641 aaPredicted RBP14.8□□□□□ -0.04
NEDD8-206ENST00000531430 PLA2R1Q13018 1463 aa14.8□□□□□ -0.04
NEDD8-206ENST00000531430 MYO3AQ8NEV4 1616 aa14.8□□□□□ -0.04
NEDD8-206ENST00000531430 DHX29Q7Z478 1369 aaKnown RBP14.79□□□□□ -0.04
NEDD8-206ENST00000531430 TNRQ92752 1358 aa14.79□□□□□ -0.04
NEDD8-206ENST00000531430 PHF23Q9BUL5 403 aaPredicted RBP14.79□□□□□ -0.04
NEDD8-206ENST00000531430 TCOF1Q13428 1488 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms