RNA–Protein interactions for RNA: ENST00000527323.5

CAPN1-208, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-208ENST00000527323 RAPGEF6Q8TEU7 1601 aa17.4■□□□□ 0.38
CAPN1-208ENST00000527323 HNRNPUQ00839 825 aaKnown RBP eCLIP17.4■□□□□ 0.38
CAPN1-208ENST00000527323 CFAP43Q8NDM7 1665 aa17.39■□□□□ 0.37
CAPN1-208ENST00000527323 ATP10BO94823 1461 aa17.39■□□□□ 0.37
CAPN1-208ENST00000527323 HECW1Q76N89 1606 aa17.39■□□□□ 0.37
CAPN1-208ENST00000527323 PTPRKQ15262 1439 aa17.37■□□□□ 0.37
CAPN1-208ENST00000527323 FGD6Q6ZV73 1430 aa17.37■□□□□ 0.37
CAPN1-208ENST00000527323 HNRNPMP52272 730 aaKnown RBP eCLIP17.36■□□□□ 0.37
CAPN1-208ENST00000527323 IRX6P78412 446 aaPredicted RBP17.36■□□□□ 0.37
CAPN1-208ENST00000527323 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.35■□□□□ 0.37
CAPN1-208ENST00000527323 FOXD1Q16676 465 aa17.34■□□□□ 0.37
CAPN1-208ENST00000527323 CCDC18Q5T9S5 1454 aa17.33■□□□□ 0.37
CAPN1-208ENST00000527323 UACAQ9BZF9 1416 aa17.33■□□□□ 0.36
CAPN1-208ENST00000527323 MYOM3Q5VTT5 1437 aa17.33■□□□□ 0.36
CAPN1-208ENST00000527323 ARHGEF11O15085 1522 aa17.32■□□□□ 0.36
CAPN1-208ENST00000527323 KIF14Q15058 1648 aa17.32■□□□□ 0.36
CAPN1-208ENST00000527323 PRKCSHP14314 528 aaPredicted RBP17.28■□□□□ 0.36
CAPN1-208ENST00000527323 MYT1LQ9UL68 1186 aa17.28■□□□□ 0.36
CAPN1-208ENST00000527323 CLASP1Q7Z460 1538 aa17.28■□□□□ 0.36
CAPN1-208ENST00000527323 EHBP1L1Q8N3D4 1523 aa17.27■□□□□ 0.36
CAPN1-208ENST00000527323 SUPT6HQ7KZ85 1726 aaKnown RBP17.27■□□□□ 0.36
CAPN1-208ENST00000527323 HSPA5P11021 654 aaKnown RBP17.27■□□□□ 0.36
CAPN1-208ENST00000527323 HFM1A2PYH4 1435 aa17.27■□□□□ 0.35
CAPN1-208ENST00000527323 TROQ12816 1431 aaPredicted RBP17.27■□□□□ 0.35
CAPN1-208ENST00000527323 BCL11AQ9H165 835 aa17.26■□□□□ 0.35
CAPN1-208ENST00000527323 ABCA8O94911 1581 aa17.25■□□□□ 0.35
CAPN1-208ENST00000527323 ERICH6Q7L0X2 663 aa17.25■□□□□ 0.35
CAPN1-208ENST00000527323 EIF4G2P78344 907 aaKnown RBP eCLIP17.23■□□□□ 0.35
CAPN1-208ENST00000527323 NAIPQ13075 1403 aa17.23■□□□□ 0.35
CAPN1-208ENST00000527323 NPM1P06748 294 aaKnown RBP eCLIP17.22■□□□□ 0.35
CAPN1-208ENST00000527323 DAXXQ9UER7 740 aaPredicted RBP17.22■□□□□ 0.35
CAPN1-208ENST00000527323 WASHC2AQ641Q2 1341 aa17.22■□□□□ 0.35
CAPN1-208ENST00000527323 MSH5O43196 834 aa17.21■□□□□ 0.35
CAPN1-208ENST00000527323 PTPN23Q9H3S7 1636 aa17.21■□□□□ 0.35
CAPN1-208ENST00000527323 SHROOM2Q13796 1616 aa17.2■□□□□ 0.34
CAPN1-208ENST00000527323 FAM9BQ8IZU0 186 aa17.2■□□□□ 0.34
CAPN1-208ENST00000527323 GPATCH8Q9UKJ3 1502 aaKnown RBP17.19■□□□□ 0.34
CAPN1-208ENST00000527323 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.18■□□□□ 0.344e-6■■□□□ 13.3
CAPN1-208ENST00000527323 AFAP1Q8N556 730 aa17.17■□□□□ 0.34
CAPN1-208ENST00000527323 CCDC184Q52MB2 194 aa17.16■□□□□ 0.34
CAPN1-208ENST00000527323 PPP4R2Q9NY27 417 aa17.15■□□□□ 0.34
CAPN1-208ENST00000527323 MRS2Q9HD23 443 aa17.14■□□□□ 0.33
CAPN1-208ENST00000527323 ABCC2Q92887 1545 aa17.14■□□□□ 0.33
CAPN1-208ENST00000527323 L3MBTL2Q969R5 705 aa17.14■□□□□ 0.33
CAPN1-208ENST00000527323 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.33
CAPN1-208ENST00000527323 MPHOSPH9Q99550 1183 aa17.13■□□□□ 0.33
CAPN1-208ENST00000527323 ABCC5O15440 1437 aa17.12■□□□□ 0.33
CAPN1-208ENST00000527323 TSPY4P0CV99 314 aa17.12■□□□□ 0.33
CAPN1-208ENST00000527323 TSPY10P0CW01 314 aa17.12■□□□□ 0.33
CAPN1-208ENST00000527323 ERICH6BQ5W0A0 696 aa17.11■□□□□ 0.33
CAPN1-208ENST00000527323 CAMSAP2Q08AD1 1489 aa17.11■□□□□ 0.33
CAPN1-208ENST00000527323 KDM6BO15054 1643 aa17.11■□□□□ 0.33
CAPN1-208ENST00000527323 ADCY10Q96PN6 1610 aa17.11■□□□□ 0.33
CAPN1-208ENST00000527323 CNGB1Q14028 1251 aaPredicted RBP17.1■□□□□ 0.33
CAPN1-208ENST00000527323 B4GALNT3Q6L9W6 998 aa17.1■□□□□ 0.33
CAPN1-208ENST00000527323 C11orf95C9JLR9 678 aaPredicted RBP17.1■□□□□ 0.33
CAPN1-208ENST00000527323 PRKRIP1Q9H875 184 aaPredicted RBP17.1■□□□□ 0.33
CAPN1-208ENST00000527323 DAPK1P53355 1430 aa17.09■□□□□ 0.33
CAPN1-208ENST00000527323 ZCCHC11Q5TAX3 1644 aaKnown RBP17.09■□□□□ 0.33
CAPN1-208ENST00000527323 TTC37Q6PGP7 1564 aa17.08■□□□□ 0.33
CAPN1-208ENST00000527323 ARHGAP5Q13017 1502 aa17.08■□□□□ 0.32
CAPN1-208ENST00000527323 KDM5BQ9UGL1 1544 aa17.07■□□□□ 0.32
CAPN1-208ENST00000527323 ASXL2Q76L83 1435 aa17.07■□□□□ 0.32
CAPN1-208ENST00000527323 CNTLNQ9NXG0 1405 aa17.07■□□□□ 0.32
CAPN1-208ENST00000527323 ABCC10Q5T3U5 1492 aa17.06■□□□□ 0.32
CAPN1-208ENST00000527323 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
CAPN1-208ENST00000527323 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.05■□□□□ 0.324e-8■■■■□ 20.7
CAPN1-208ENST00000527323 CCDC7Q96M83 1385 aa17.04■□□□□ 0.32
CAPN1-208ENST00000527323 POLR3GLQ9BT43 218 aa17.04■□□□□ 0.32
CAPN1-208ENST00000527323 MIA2Q96PC5 1412 aa17.04■□□□□ 0.32
CAPN1-208ENST00000527323 RAPGEF3O95398 923 aa17.03■□□□□ 0.32
CAPN1-208ENST00000527323 CDC42BPAQ5VT25 1732 aa17.03■□□□□ 0.32
CAPN1-208ENST00000527323 EFCAB2Q5VUJ9 269 aa17.02■□□□□ 0.32
CAPN1-208ENST00000527323 SENP3Q9H4L4 574 aaPredicted RBP17.02■□□□□ 0.32
CAPN1-208ENST00000527323 FAM69CQ0P6D2 419 aa17.02■□□□□ 0.32
CAPN1-208ENST00000527323 AEBP2Q6ZN18 517 aaPredicted RBP17.02■□□□□ 0.31
CAPN1-208ENST00000527323 ZBED9Q6R2W3 1325 aa17.01■□□□□ 0.31
CAPN1-208ENST00000527323 NBPF8Q3BBV2 869 aa17.01■□□□□ 0.31
CAPN1-208ENST00000527323 ZNF326Q5BKZ1 582 aaKnown RBP17■□□□□ 0.31
CAPN1-208ENST00000527323 SYCP2Q9BX26 1530 aa16.99■□□□□ 0.31
CAPN1-208ENST00000527323 TCOF1Q13428 1488 aaKnown RBP16.99■□□□□ 0.31
CAPN1-208ENST00000527323 DENND4BO75064 1496 aaPredicted RBP16.98■□□□□ 0.31
CAPN1-208ENST00000527323 NCOA1Q15788 1441 aa16.98■□□□□ 0.31
CAPN1-208ENST00000527323 KIF7Q2M1P5 1343 aa16.97■□□□□ 0.31
CAPN1-208ENST00000527323 CDC42BPBQ9Y5S2 1711 aa16.97■□□□□ 0.31
CAPN1-208ENST00000527323 ARHGEF12Q9NZN5 1544 aa16.97■□□□□ 0.31
CAPN1-208ENST00000527323 TRAPPC8Q9Y2L5 1435 aa16.97■□□□□ 0.31
CAPN1-208ENST00000527323 WDR7Q9Y4E6 1490 aa16.96■□□□□ 0.31
CAPN1-208ENST00000527323 C9orf84Q5VXU9 1444 aa16.96■□□□□ 0.31
CAPN1-208ENST00000527323 PKD2Q13563 968 aa16.95■□□□□ 0.3
CAPN1-208ENST00000527323 RIMBP3CA6NJZ7 1639 aa16.95■□□□□ 0.3
CAPN1-208ENST00000527323 RIMBP3BA6NNM3 1639 aa16.95■□□□□ 0.3
CAPN1-208ENST00000527323 RIMBP3Q9UFD9 1639 aa16.95■□□□□ 0.3
CAPN1-208ENST00000527323 KIF15Q9NS87 1388 aa16.94■□□□□ 0.3
CAPN1-208ENST00000527323 SAMD9LQ8IVG5 1584 aa16.94■□□□□ 0.3
CAPN1-208ENST00000527323 SENP3-EIF4A1A0A087X0R7 540 aa16.94■□□□□ 0.3
CAPN1-208ENST00000527323 NUP155O75694 1391 aa16.94■□□□□ 0.3
CAPN1-208ENST00000527323 ANKRD30AQ9BXX3 1397 aa16.92■□□□□ 0.3
CAPN1-208ENST00000527323 NCBP3Q53F19 620 aaKnown RBP16.92■□□□□ 0.3
CAPN1-208ENST00000527323 ANKRD30BQ9BXX2 1392 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms