RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 POGZQ7Z3K3 1410 aa33■■■□□ 2.87
VPS28-206ENST00000526734 MAGI2Q86UL8 1455 aa32.99■■■□□ 2.87
VPS28-206ENST00000526734 ARHGEF40Q8TER5 1519 aa32.99■■■□□ 2.87
VPS28-206ENST00000526734 PREX2Q70Z35 1606 aa32.96■■■□□ 2.87
VPS28-206ENST00000526734 LOC105371045A0A1W2PR82 267 aa32.95■■■□□ 2.87
VPS28-206ENST00000526734 MTUS2Q5JR59 1369 aa32.92■■■□□ 2.86
VPS28-206ENST00000526734 ZFYVE16Q7Z3T8 1539 aa32.91■■■□□ 2.86
VPS28-206ENST00000526734 ZNF518AQ6AHZ1 1483 aa32.9■■■□□ 2.86
VPS28-206ENST00000526734 CDC42BPBQ9Y5S2 1711 aa32.89■■■□□ 2.86
VPS28-206ENST00000526734 EHBP1L1Q8N3D4 1523 aa32.87■■■□□ 2.85
VPS28-206ENST00000526734 VPS8Q8N3P4 1428 aa32.85■■■□□ 2.85
VPS28-206ENST00000526734 CDC42BPAQ5VT25 1732 aa32.83■■■□□ 2.85
VPS28-206ENST00000526734 ABCC1P33527 1531 aa32.82■■■□□ 2.85
VPS28-206ENST00000526734 KDM5CP41229 1560 aa32.82■■■□□ 2.84
VPS28-206ENST00000526734 GPATCH8Q9UKJ3 1502 aaKnown RBP32.82■■■□□ 2.84
VPS28-206ENST00000526734 YEATS2Q9ULM3 1422 aa32.81■■■□□ 2.84
VPS28-206ENST00000526734 CCNB3Q8WWL7 1395 aa32.8■■■□□ 2.84
VPS28-206ENST00000526734 ARID4BQ4LE39 1312 aaPredicted RBP32.79■■■□□ 2.84
VPS28-206ENST00000526734 ADAMTSL3P82987 1691 aa32.76■■■□□ 2.84
VPS28-206ENST00000526734 BCORL1Q5H9F3 1711 aa32.76■■■□□ 2.83
VPS28-206ENST00000526734 ATP10AO60312 1499 aa32.74■■■□□ 2.83
VPS28-206ENST00000526734 PLEKHH2Q8IVE3 1493 aa32.74■■■□□ 2.83
VPS28-206ENST00000526734 ITSN2Q9NZM3 1697 aa32.73■■■□□ 2.83
VPS28-206ENST00000526734 AFAP1Q8N556 730 aa32.73■■■□□ 2.83
VPS28-206ENST00000526734 TIAM1Q13009 1591 aa32.73■■■□□ 2.83
VPS28-206ENST00000526734 HECW2Q9P2P5 1572 aa32.73■■■□□ 2.83
VPS28-206ENST00000526734 MLH3Q9UHC1 1453 aa32.73■■■□□ 2.83
VPS28-206ENST00000526734 C9orf84Q5VXU9 1444 aa32.72■■■□□ 2.83
VPS28-206ENST00000526734 CFDP1Q9UEE9 299 aaPredicted RBP32.71■■■□□ 2.83
VPS28-206ENST00000526734 ARHGEF12Q9NZN5 1544 aa32.71■■■□□ 2.83
VPS28-206ENST00000526734 SAMD9LQ8IVG5 1584 aa32.69■■■□□ 2.82
VPS28-206ENST00000526734 KIAA1107Q9UPP5 1409 aa32.68■■■□□ 2.82
VPS28-206ENST00000526734 TRAPPC8Q9Y2L5 1435 aa32.68■■■□□ 2.82
VPS28-206ENST00000526734 MAP3K1Q13233 1512 aa32.67■■■□□ 2.82
VPS28-206ENST00000526734 ZNF777Q9ULD5 760 aaPredicted RBP32.66■■■□□ 2.82
VPS28-206ENST00000526734 SUPT6HQ7KZ85 1726 aaKnown RBP32.64■■■□□ 2.82
VPS28-206ENST00000526734 REREQ9P2R6 1566 aa32.63■■■□□ 2.81
VPS28-206ENST00000526734 SYCP2Q9BX26 1530 aa32.63■■■□□ 2.81
VPS28-206ENST00000526734 PTPRMP28827 1452 aa32.63■■■□□ 2.81
VPS28-206ENST00000526734 MYT1LQ9UL68 1186 aa32.63■■■□□ 2.81
VPS28-206ENST00000526734 MADDQ8WXG6 1647 aa32.62■■■□□ 2.81
VPS28-206ENST00000526734 DIP2CQ9Y2E4 1556 aa32.62■■■□□ 2.81
VPS28-206ENST00000526734 NCOA2Q15596 1464 aa32.61■■■□□ 2.81
VPS28-206ENST00000526734 LRRC9Q6ZRR7 1453 aa32.6■■■□□ 2.81
VPS28-206ENST00000526734 SIGLEC1Q9BZZ2 1709 aa32.58■■■□□ 2.81
VPS28-206ENST00000526734 ABCA6Q8N139 1617 aa32.56■■■□□ 2.8
VPS28-206ENST00000526734 HNRNPMP52272 730 aaKnown RBP eCLIP32.53■■■□□ 2.8
VPS28-206ENST00000526734 KIDINS220Q9ULH0 1771 aa32.53■■■□□ 2.8
VPS28-206ENST00000526734 SPAG9O60271 1321 aaKnown RBP32.52■■■□□ 2.8
VPS28-206ENST00000526734 AGLP35573 1532 aa32.51■■■□□ 2.8
VPS28-206ENST00000526734 RIMS1Q86UR5 1692 aaKnown RBP32.5■■■□□ 2.79
VPS28-206ENST00000526734 ATP7AQ04656 1500 aa32.47■■■□□ 2.79
VPS28-206ENST00000526734 MLECQ14165 292 aa32.47■■■□□ 2.79
VPS28-206ENST00000526734 APLP2Q06481 763 aa32.46■■■□□ 2.79
VPS28-206ENST00000526734 INO80Q9ULG1 1556 aaPredicted RBP32.45■■■□□ 2.79
VPS28-206ENST00000526734 MBD5Q9P267 1494 aa32.45■■■□□ 2.79
VPS28-206ENST00000526734 FER1L4A9Z1Z3 1794 aa32.45■■■□□ 2.78
VPS28-206ENST00000526734 ZNF644Q9H582 1327 aaPredicted RBP32.44■■■□□ 2.78
VPS28-206ENST00000526734 CAMSAP2Q08AD1 1489 aa32.42■■■□□ 2.78
VPS28-206ENST00000526734 RSPH4AQ5TD94 716 aa32.42■■■□□ 2.78
VPS28-206ENST00000526734 KANK4Q5T7N3 995 aaPredicted RBP32.4■■■□□ 2.78
VPS28-206ENST00000526734 RTEL1-TNFRSF6BF6WH68 1400 aa32.39■■■□□ 2.78
VPS28-206ENST00000526734 CCDC141Q6ZP82 1450 aa32.38■■■□□ 2.77
VPS28-206ENST00000526734 MIA2Q96PC5 1412 aa32.35■■■□□ 2.77
VPS28-206ENST00000526734 MYOM3Q5VTT5 1437 aa32.34■■■□□ 2.77
VPS28-206ENST00000526734 A2MP01023 1474 aa32.34■■■□□ 2.77
VPS28-206ENST00000526734 PLXNC1O60486 1568 aa32.32■■■□□ 2.77
VPS28-206ENST00000526734 ARHGEF5Q12774 1597 aa32.32■■■□□ 2.77
VPS28-206ENST00000526734 ADGBQ8N7X0 1667 aa32.3■■■□□ 2.76
VPS28-206ENST00000526734 CNTLNQ9NXG0 1405 aa32.29■■■□□ 2.76
VPS28-206ENST00000526734 ESF1Q9H501 851 aaKnown RBP32.28■■■□□ 2.76
VPS28-206ENST00000526734 LMTK3Q96Q04 1460 aa32.24■■■□□ 2.75
VPS28-206ENST00000526734 TSPY4P0CV99 314 aa32.23■■■□□ 2.75
VPS28-206ENST00000526734 TSPY10P0CW01 314 aa32.23■■■□□ 2.75
VPS28-206ENST00000526734 DHX29Q7Z478 1369 aaKnown RBP32.2■■■□□ 2.75
VPS28-206ENST00000526734 PLPPR3Q6T4P5 718 aa32.2■■■□□ 2.75
VPS28-206ENST00000526734 MAST1Q9Y2H9 1570 aa32.17■■■□□ 2.74
VPS28-206ENST00000526734 PPP6R1Q9UPN7 881 aa32.17■■■□□ 2.74
VPS28-206ENST00000526734 MROH2AA6NES4 1674 aa32.15■■■□□ 2.74
VPS28-206ENST00000526734 CEBPAP49715 358 aaPredicted RBP32.13■■■□□ 2.73
VPS28-206ENST00000526734 C3P01024 1663 aa32.11■■■□□ 2.73
VPS28-206ENST00000526734 PREX1Q8TCU6 1659 aa32.11■■■□□ 2.73
VPS28-206ENST00000526734 FGD6Q6ZV73 1430 aa32.1■■■□□ 2.73
VPS28-206ENST00000526734 PTPN23Q9H3S7 1636 aa32.09■■■□□ 2.73
VPS28-206ENST00000526734 FAM135AQ9P2D6 1515 aa32.09■■■□□ 2.73
VPS28-206ENST00000526734 GGT6Q6P531 493 aa32.08■■■□□ 2.73
VPS28-206ENST00000526734 TCOF1Q13428 1488 aaKnown RBP32.08■■■□□ 2.73
VPS28-206ENST00000526734 UHRF1BP1Q6BDS2 1440 aa32.07■■■□□ 2.72
VPS28-206ENST00000526734 SHANK2Q9UPX8 1470 aa32.06■■■□□ 2.72
VPS28-206ENST00000526734 NPATQ14207 1427 aa32.06■■■□□ 2.72
VPS28-206ENST00000526734 SETD1BQ9UPS6 1966 aaKnown RBP32.05■■■□□ 2.72
VPS28-206ENST00000526734 ZMYM3Q14202 1370 aa32.04■■■□□ 2.72
VPS28-206ENST00000526734 KIF3BO15066 747 aa32.02■■■□□ 2.72
VPS28-206ENST00000526734 CLTCQ00610 1675 aaKnown RBP32.01■■■□□ 2.71
VPS28-206ENST00000526734 ABCC5O15440 1437 aa31.99■■■□□ 2.71
VPS28-206ENST00000526734 HSPA2P54652 639 aa31.98■■■□□ 2.71
VPS28-206ENST00000526734 DNMT1P26358 1616 aaKnown RBP31.97■■■□□ 2.71
VPS28-206ENST00000526734 CROCC2H7BZ55 1655 aa31.97■■■□□ 2.71
VPS28-206ENST00000526734 DAPK1P53355 1430 aa31.96■■■□□ 2.71
VPS28-206ENST00000526734 EIF2AK4Q9P2K8 1649 aaKnown RBP31.96■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms