RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 NUP153P49790 1475 aaKnown RBP10.98□□□□□ -0.65
HDAC3-216ENST00000523088 P3H3Q8IVL6 736 aa10.97□□□□□ -0.65
HDAC3-216ENST00000523088 ARAP3Q8WWN8 1544 aa10.97□□□□□ -0.65
HDAC3-216ENST00000523088 HECW1Q76N89 1606 aa10.96□□□□□ -0.65
HDAC3-216ENST00000523088 NEO1Q92859 1461 aa10.96□□□□□ -0.65
HDAC3-216ENST00000523088 CNKSR2Q8WXI2 1034 aa10.96□□□□□ -0.65
HDAC3-216ENST00000523088 FGD1P98174 961 aa10.95□□□□□ -0.66
HDAC3-216ENST00000523088 KCNH8Q96L42 1107 aa10.95□□□□□ -0.66
HDAC3-216ENST00000523088 MYT1LQ9UL68 1186 aa10.95□□□□□ -0.66
HDAC3-216ENST00000523088 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-216ENST00000523088 UBTFP17480 764 aaKnown RBP10.94□□□□□ -0.66
HDAC3-216ENST00000523088 HNRNPUL2Q1KMD3 747 aaKnown RBP10.94□□□□□ -0.66
HDAC3-216ENST00000523088 TMEM132AQ24JP5 1023 aa10.94□□□□□ -0.66
HDAC3-216ENST00000523088 ZNF326Q5BKZ1 582 aaKnown RBP10.94□□□□□ -0.66
HDAC3-216ENST00000523088 COL17A1Q9UMD9 1497 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-216ENST00000523088 PLEKHD1A6NEE1 506 aa10.93□□□□□ -0.66
HDAC3-216ENST00000523088 ANO8Q9HCE9 1232 aaPredicted RBP10.93□□□□□ -0.66
HDAC3-216ENST00000523088 HMGB1P09429 215 aaKnown RBP10.92□□□□□ -0.66
HDAC3-216ENST00000523088 CHMP4AQ9BY43 222 aa10.92□□□□□ -0.66
HDAC3-216ENST00000523088 ADGRL1O94910 1474 aa10.92□□□□□ -0.66
HDAC3-216ENST00000523088 CDK11BP21127 795 aaKnown RBP10.91□□□□□ -0.66
HDAC3-216ENST00000523088 ARHGAP35Q9NRY4 1499 aa10.9□□□□□ -0.66
HDAC3-216ENST00000523088 HSP90B1P14625 803 aaKnown RBP10.9□□□□□ -0.66
HDAC3-216ENST00000523088 ACIN1Q9UKV3 1341 aaKnown RBP10.89□□□□□ -0.67
HDAC3-216ENST00000523088 PLCB2Q00722 1185 aa10.89□□□□□ -0.67
HDAC3-216ENST00000523088 KDM4FA0A1W2PPD8 638 aa10.88□□□□□ -0.67
HDAC3-216ENST00000523088 ARID3CA6NKF2 412 aa10.88□□□□□ -0.67
HDAC3-216ENST00000523088 MYO5CQ9NQX4 1742 aa10.88□□□□□ -0.67
HDAC3-216ENST00000523088 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.88□□□□□ -0.67
HDAC3-216ENST00000523088 KIF14Q15058 1648 aa10.87□□□□□ -0.67
HDAC3-216ENST00000523088 CCDC18Q5T9S5 1454 aa10.87□□□□□ -0.67
HDAC3-216ENST00000523088 CLIP1P30622 1438 aa10.87□□□□□ -0.67
HDAC3-216ENST00000523088 FANCAO15360 1455 aa10.87□□□□□ -0.67
HDAC3-216ENST00000523088 RICTORQ6R327 1708 aa10.86□□□□□ -0.67
HDAC3-216ENST00000523088 TTC37Q6PGP7 1564 aa10.86□□□□□ -0.67
HDAC3-216ENST00000523088 CDK13Q14004 1512 aaKnown RBP10.85□□□□□ -0.67
HDAC3-216ENST00000523088 DENND4BO75064 1496 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-216ENST00000523088 ZMYM4Q5VZL5 1548 aa10.84□□□□□ -0.67
HDAC3-216ENST00000523088 LOC105371045A0A1W2PR82 267 aa10.84□□□□□ -0.67
HDAC3-216ENST00000523088 SAMD1Q6SPF0 538 aaPredicted RBP10.84□□□□□ -0.67
HDAC3-216ENST00000523088 ARHGEF40Q8TER5 1519 aa10.84□□□□□ -0.67
HDAC3-216ENST00000523088 AKNAQ7Z591 1439 aa10.84□□□□□ -0.67
HDAC3-216ENST00000523088 FRMPD1Q5SYB0 1578 aa10.83□□□□□ -0.68
HDAC3-216ENST00000523088 MAGI2Q86UL8 1455 aa10.83□□□□□ -0.68
HDAC3-216ENST00000523088 FYCO1Q9BQS8 1478 aa10.83□□□□□ -0.68
HDAC3-216ENST00000523088 TROQ12816 1431 aaPredicted RBP10.83□□□□□ -0.68
HDAC3-216ENST00000523088 CASKIN1Q8WXD9 1431 aa10.83□□□□□ -0.68
HDAC3-216ENST00000523088 RSPH4AQ5TD94 716 aa10.82□□□□□ -0.68
HDAC3-216ENST00000523088 BCCIPQ9P287 314 aaKnown RBP eCLIP10.82□□□□□ -0.68
HDAC3-216ENST00000523088 PLCH2O75038 1416 aa10.82□□□□□ -0.68
HDAC3-216ENST00000523088 PCF11O94913 1555 aaKnown RBP10.82□□□□□ -0.68
HDAC3-216ENST00000523088 LRRIQ1Q96JM4 1722 aa10.81□□□□□ -0.68
HDAC3-216ENST00000523088 BCORL1Q5H9F3 1711 aa10.8□□□□□ -0.68
HDAC3-216ENST00000523088 ADAMTSL3P82987 1691 aa10.79□□□□□ -0.68
HDAC3-216ENST00000523088 POGZQ7Z3K3 1410 aa10.79□□□□□ -0.68
HDAC3-216ENST00000523088 TRIM26Q12899 539 aaPredicted RBP10.79□□□□□ -0.68
HDAC3-216ENST00000523088 ATP1B4Q9UN42 357 aaPredicted RBP10.79□□□□□ -0.68
HDAC3-216ENST00000523088 ZFYVE16Q7Z3T8 1539 aa10.79□□□□□ -0.68
HDAC3-216ENST00000523088 PREX2Q70Z35 1606 aa10.78□□□□□ -0.68
HDAC3-216ENST00000523088 BCL11BQ9C0K0 894 aaPredicted RBP10.78□□□□□ -0.68
HDAC3-216ENST00000523088 ZNF518AQ6AHZ1 1483 aa10.77□□□□□ -0.69
HDAC3-216ENST00000523088 RAPGEF3O95398 923 aa10.77□□□□□ -0.69
HDAC3-216ENST00000523088 EFCAB2Q5VUJ9 269 aa10.77□□□□□ -0.69
HDAC3-216ENST00000523088 ARHGAP5Q13017 1502 aa10.77□□□□□ -0.69
HDAC3-216ENST00000523088 CLSPNQ9HAW4 1339 aa10.77□□□□□ -0.69
HDAC3-216ENST00000523088 GLIPR1L2Q4G1C9 344 aa10.75□□□□□ -0.69
HDAC3-216ENST00000523088 RSPH6AQ9H0K4 717 aa10.75□□□□□ -0.69
HDAC3-216ENST00000523088 CDC42BPBQ9Y5S2 1711 aa10.75□□□□□ -0.69
HDAC3-216ENST00000523088 SCAPERQ9BY12 1400 aa10.75□□□□□ -0.69
HDAC3-216ENST00000523088 KDM5CP41229 1560 aa10.74□□□□□ -0.69
HDAC3-216ENST00000523088 HECW2Q9P2P5 1572 aa10.74□□□□□ -0.69
HDAC3-216ENST00000523088 CDC42BPAQ5VT25 1732 aa10.73□□□□□ -0.69
HDAC3-216ENST00000523088 ARID4BQ4LE39 1312 aaPredicted RBP10.73□□□□□ -0.69
HDAC3-216ENST00000523088 REREQ9P2R6 1566 aa10.73□□□□□ -0.69
HDAC3-216ENST00000523088 MADDQ8WXG6 1647 aa10.73□□□□□ -0.69
HDAC3-216ENST00000523088 ZEB1P37275 1124 aaPredicted RBP10.72□□□□□ -0.69
HDAC3-216ENST00000523088 C9orf84Q5VXU9 1444 aa10.72□□□□□ -0.69
HDAC3-216ENST00000523088 PTPRMP28827 1452 aa10.72□□□□□ -0.69
HDAC3-216ENST00000523088 ABCC1P33527 1531 aa10.72□□□□□ -0.69
HDAC3-216ENST00000523088 ITSN2Q9NZM3 1697 aa10.72□□□□□ -0.69
HDAC3-216ENST00000523088 FER1L4A9Z1Z3 1794 aa10.72□□□□□ -0.69
HDAC3-216ENST00000523088 HAP1P54257 671 aaPredicted RBP10.71□□□□□ -0.69
HDAC3-216ENST00000523088 AAMPQ13685 434 aa10.71□□□□□ -0.69
HDAC3-216ENST00000523088 RIMS1Q86UR5 1692 aaKnown RBP10.7□□□□□ -0.7
HDAC3-216ENST00000523088 ATP10AO60312 1499 aa10.7□□□□□ -0.7
HDAC3-216ENST00000523088 PLEKHH2Q8IVE3 1493 aa10.7□□□□□ -0.7
HDAC3-216ENST00000523088 EHBP1L1Q8N3D4 1523 aa10.69□□□□□ -0.7
HDAC3-216ENST00000523088 MLH3Q9UHC1 1453 aa10.69□□□□□ -0.7
HDAC3-216ENST00000523088 YEATS2Q9ULM3 1422 aa10.68□□□□□ -0.7
HDAC3-216ENST00000523088 CEP162Q5TB80 1403 aa10.67□□□□□ -0.7
HDAC3-216ENST00000523088 DHX37Q8IY37 1157 aaKnown RBP10.67□□□□□ -0.7
HDAC3-216ENST00000523088 MTUS2Q5JR59 1369 aa10.66□□□□□ -0.7
HDAC3-216ENST00000523088 DIP2CQ9Y2E4 1556 aa10.66□□□□□ -0.7
HDAC3-216ENST00000523088 ARHGEF12Q9NZN5 1544 aa10.66□□□□□ -0.7
HDAC3-216ENST00000523088 SETD1BQ9UPS6 1966 aaKnown RBP10.65□□□□□ -0.7
HDAC3-216ENST00000523088 AGLP35573 1532 aa10.65□□□□□ -0.7
HDAC3-216ENST00000523088 VSIG10Q8N0Z9 540 aa10.65□□□□□ -0.7
HDAC3-216ENST00000523088 KIAA1107Q9UPP5 1409 aa10.65□□□□□ -0.7
HDAC3-216ENST00000523088 ABCA6Q8N139 1617 aa10.65□□□□□ -0.7
HDAC3-216ENST00000523088 SIGLEC1Q9BZZ2 1709 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms