RNA–Protein interactions for RNA: ENST00000512683.1

VEGFA-216, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-216ENST00000512683 ATP10AO60312 1499 aa20.56■□□□□ 0.88
VEGFA-216ENST00000512683 RICTORQ6R327 1708 aa20.56■□□□□ 0.88
VEGFA-216ENST00000512683 TTC37Q6PGP7 1564 aa20.55■□□□□ 0.88
VEGFA-216ENST00000512683 HECW1Q76N89 1606 aa20.55■□□□□ 0.88
VEGFA-216ENST00000512683 PCF11O94913 1555 aaKnown RBP20.51■□□□□ 0.87
VEGFA-216ENST00000512683 LMTK3Q96Q04 1460 aa20.51■□□□□ 0.87
VEGFA-216ENST00000512683 MADDQ8WXG6 1647 aa20.51■□□□□ 0.87
VEGFA-216ENST00000512683 MLECQ14165 292 aa20.5■□□□□ 0.87
VEGFA-216ENST00000512683 AFAP1Q8N556 730 aa20.5■□□□□ 0.87
VEGFA-216ENST00000512683 C9orf84Q5VXU9 1444 aa20.5■□□□□ 0.87
VEGFA-216ENST00000512683 ZNF518AQ6AHZ1 1483 aa20.5■□□□□ 0.87
VEGFA-216ENST00000512683 CASKIN1Q8WXD9 1431 aa20.48■□□□□ 0.87
VEGFA-216ENST00000512683 MYT1LQ9UL68 1186 aa20.45■□□□□ 0.86
VEGFA-216ENST00000512683 CCDC18Q5T9S5 1454 aa20.44■□□□□ 0.86
VEGFA-216ENST00000512683 KIF14Q15058 1648 aa20.43■□□□□ 0.86
VEGFA-216ENST00000512683 HSPA2P54652 639 aa20.43■□□□□ 0.86
VEGFA-216ENST00000512683 ARHGAP5Q13017 1502 aa20.43■□□□□ 0.86
VEGFA-216ENST00000512683 MLH3Q9UHC1 1453 aa20.42■□□□□ 0.86
VEGFA-216ENST00000512683 PLPPR3Q6T4P5 718 aa20.41■□□□□ 0.86
VEGFA-216ENST00000512683 DMRT2Q9Y5R5 561 aa20.41■□□□□ 0.86
VEGFA-216ENST00000512683 ARHGEF12Q9NZN5 1544 aa20.41■□□□□ 0.86
VEGFA-216ENST00000512683 RIMS1Q86UR5 1692 aaKnown RBP20.39■□□□□ 0.86
VEGFA-216ENST00000512683 MYO5CQ9NQX4 1742 aa20.38■□□□□ 0.85
VEGFA-216ENST00000512683 KDM5CP41229 1560 aa20.38■□□□□ 0.85
VEGFA-216ENST00000512683 ESF1Q9H501 851 aaKnown RBP20.37■□□□□ 0.85
VEGFA-216ENST00000512683 CEBPAP49715 358 aaPredicted RBP20.35■□□□□ 0.85
VEGFA-216ENST00000512683 LRRIQ1Q96JM4 1722 aa20.34■□□□□ 0.85
VEGFA-216ENST00000512683 REREQ9P2R6 1566 aa20.34■□□□□ 0.85
VEGFA-216ENST00000512683 FYCO1Q9BQS8 1478 aa20.33■□□□□ 0.85
VEGFA-216ENST00000512683 TRAPPC8Q9Y2L5 1435 aa20.33■□□□□ 0.84
VEGFA-216ENST00000512683 CERKQ8TCT0 537 aa20.32■□□□□ 0.84
VEGFA-216ENST00000512683 AGLP35573 1532 aa20.32■□□□□ 0.84
VEGFA-216ENST00000512683 SIGLEC1Q9BZZ2 1709 aa20.3■□□□□ 0.84
VEGFA-216ENST00000512683 CFDP1Q9UEE9 299 aaPredicted RBP20.29■□□□□ 0.84
VEGFA-216ENST00000512683 UHRF1BP1Q6BDS2 1440 aa20.28■□□□□ 0.84
VEGFA-216ENST00000512683 CNTLNQ9NXG0 1405 aa20.28■□□□□ 0.84
VEGFA-216ENST00000512683 KIAA1107Q9UPP5 1409 aa20.28■□□□□ 0.84
VEGFA-216ENST00000512683 ZNF777Q9ULD5 760 aaPredicted RBP20.28■□□□□ 0.84
VEGFA-216ENST00000512683 SPAG9O60271 1321 aaKnown RBP20.27■□□□□ 0.84
VEGFA-216ENST00000512683 ABCC1P33527 1531 aa20.27■□□□□ 0.83
VEGFA-216ENST00000512683 GPATCH8Q9UKJ3 1502 aaKnown RBP20.26■□□□□ 0.83
VEGFA-216ENST00000512683 DIP2CQ9Y2E4 1556 aa20.25■□□□□ 0.83
VEGFA-216ENST00000512683 PLEKHH2Q8IVE3 1493 aa20.25■□□□□ 0.83
VEGFA-216ENST00000512683 PPP6R1Q9UPN7 881 aa20.25■□□□□ 0.83
VEGFA-216ENST00000512683 FER1L4A9Z1Z3 1794 aa20.25■□□□□ 0.83
VEGFA-216ENST00000512683 HNRNPMP52272 730 aaKnown RBP eCLIP20.24■□□□□ 0.83
VEGFA-216ENST00000512683 PREX2Q70Z35 1606 aa20.24■□□□□ 0.83
VEGFA-216ENST00000512683 CCNB3Q8WWL7 1395 aa20.22■□□□□ 0.83
VEGFA-216ENST00000512683 CDC42BPBQ9Y5S2 1711 aa20.22■□□□□ 0.83
VEGFA-216ENST00000512683 MTUS2Q5JR59 1369 aa20.21■□□□□ 0.83
VEGFA-216ENST00000512683 SETD1BQ9UPS6 1966 aaKnown RBP20.21■□□□□ 0.83
VEGFA-216ENST00000512683 PTPRTO14522 1441 aa20.19■□□□□ 0.82
VEGFA-216ENST00000512683 ZMYM3Q14202 1370 aa20.18■□□□□ 0.82
VEGFA-216ENST00000512683 RSPH4AQ5TD94 716 aa20.17■□□□□ 0.82
VEGFA-216ENST00000512683 NPATQ14207 1427 aa20.17■□□□□ 0.82
VEGFA-216ENST00000512683 PREX1Q8TCU6 1659 aa20.16■□□□□ 0.82
VEGFA-216ENST00000512683 SAMD9LQ8IVG5 1584 aa20.16■□□□□ 0.82
VEGFA-216ENST00000512683 ABCA6Q8N139 1617 aa20.16■□□□□ 0.82
VEGFA-216ENST00000512683 ITSN2Q9NZM3 1697 aa20.13■□□□□ 0.81
VEGFA-216ENST00000512683 KIDINS220Q9ULH0 1771 aa20.12■□□□□ 0.81
VEGFA-216ENST00000512683 A2MP01023 1474 aa20.11■□□□□ 0.81
VEGFA-216ENST00000512683 RTEL1-TNFRSF6BF6WH68 1400 aa20.1■□□□□ 0.81
VEGFA-216ENST00000512683 CDC42BPAQ5VT25 1732 aa20.1■□□□□ 0.81
VEGFA-216ENST00000512683 SYCP2Q9BX26 1530 aa20.1■□□□□ 0.81
VEGFA-216ENST00000512683 GGT6Q6P531 493 aa20.09■□□□□ 0.81
VEGFA-216ENST00000512683 CEP162Q5TB80 1403 aa20.09■□□□□ 0.81
VEGFA-216ENST00000512683 PKD2Q13563 968 aa20.08■□□□□ 0.81
VEGFA-216ENST00000512683 NCOA1Q15788 1441 aa20.07■□□□□ 0.8
VEGFA-216ENST00000512683 ATP7AQ04656 1500 aa20.07■□□□□ 0.8
VEGFA-216ENST00000512683 ZNF644Q9H582 1327 aaPredicted RBP20.06■□□□□ 0.8
VEGFA-216ENST00000512683 MBD5Q9P267 1494 aa20.06■□□□□ 0.8
VEGFA-216ENST00000512683 DHX29Q7Z478 1369 aaKnown RBP20.06■□□□□ 0.8
VEGFA-216ENST00000512683 C3P01024 1663 aa20.04■□□□□ 0.8
VEGFA-216ENST00000512683 STRCQ7RTU9 1775 aa20.03■□□□□ 0.8
VEGFA-216ENST00000512683 EHBP1L1Q8N3D4 1523 aa20.02■□□□□ 0.79
VEGFA-216ENST00000512683 PLXNC1O60486 1568 aa20.01■□□□□ 0.79
VEGFA-216ENST00000512683 IQSEC2Q5JU85 1478 aa20.01■□□□□ 0.79
VEGFA-216ENST00000512683 PTPRKQ15262 1439 aa20.01■□□□□ 0.79
VEGFA-216ENST00000512683 TSPY4P0CV99 314 aa20■□□□□ 0.79
VEGFA-216ENST00000512683 TSPY10P0CW01 314 aa20■□□□□ 0.79
VEGFA-216ENST00000512683 MROH2AA6NES4 1674 aa20■□□□□ 0.79
VEGFA-216ENST00000512683 INO80Q9ULG1 1556 aaPredicted RBP20■□□□□ 0.79
VEGFA-216ENST00000512683 PLA2R1Q13018 1463 aa19.98■□□□□ 0.79
VEGFA-216ENST00000512683 KIF3BO15066 747 aa19.97■□□□□ 0.79
VEGFA-216ENST00000512683 NCKAP5LQ9HCH0 1330 aa19.97■□□□□ 0.79
VEGFA-216ENST00000512683 TIAM1Q13009 1591 aa19.95■□□□□ 0.78
VEGFA-216ENST00000512683 CAMSAP1Q5T5Y3 1602 aa19.94■□□□□ 0.78
VEGFA-216ENST00000512683 NCOA2Q15596 1464 aa19.93■□□□□ 0.78
VEGFA-216ENST00000512683 CCDC141Q6ZP82 1450 aa19.93■□□□□ 0.78
VEGFA-216ENST00000512683 LOC105371045A0A1W2PR82 267 aa19.93■□□□□ 0.78
VEGFA-216ENST00000512683 LTBP4Q8N2S1 1624 aa19.93■□□□□ 0.78
VEGFA-216ENST00000512683 WASHC2CQ9Y4E1 1318 aa19.93■□□□□ 0.78
VEGFA-216ENST00000512683 FAM135AQ9P2D6 1515 aa19.92■□□□□ 0.78
VEGFA-216ENST00000512683 TCOF1Q13428 1488 aaKnown RBP19.91■□□□□ 0.78
VEGFA-216ENST00000512683 SUPT6HQ7KZ85 1726 aaKnown RBP19.9■□□□□ 0.78
VEGFA-216ENST00000512683 THEMISQ8N1K5 641 aaPredicted RBP19.9■□□□□ 0.78
VEGFA-216ENST00000512683 ADGBQ8N7X0 1667 aa19.9■□□□□ 0.78
VEGFA-216ENST00000512683 A2ML1A8K2U0 1454 aa19.89■□□□□ 0.77
VEGFA-216ENST00000512683 TNRQ92752 1358 aa19.88■□□□□ 0.77
VEGFA-216ENST00000512683 ZNF335Q9H4Z2 1342 aaPredicted RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms