RNA–Protein interactions for RNA: ENST00000511676.5

NR1I3-228, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 1,061 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-228ENST00000511676 ARID3CA6NKF2 412 aa13.95□□□□□ -0.18
NR1I3-228ENST00000511676 RAPGEF3O95398 923 aa13.95□□□□□ -0.18
NR1I3-228ENST00000511676 MAGI2Q86UL8 1455 aa13.94□□□□□ -0.18
NR1I3-228ENST00000511676 LRRIQ1Q96JM4 1722 aa13.94□□□□□ -0.18
NR1I3-228ENST00000511676 CFAP74Q9C0B2 1584 aa13.94□□□□□ -0.18
NR1I3-228ENST00000511676 MTUS2Q5JR59 1369 aa13.94□□□□□ -0.18
NR1I3-228ENST00000511676 AKNAQ7Z591 1439 aa13.93□□□□□ -0.18
NR1I3-228ENST00000511676 RRBP1Q9P2E9 1410 aaKnown RBP13.93□□□□□ -0.18
NR1I3-228ENST00000511676 KANK4Q5T7N3 995 aaPredicted RBP13.92□□□□□ -0.18
NR1I3-228ENST00000511676 EFCAB2Q5VUJ9 269 aa13.92□□□□□ -0.18
NR1I3-228ENST00000511676 DMRT2Q9Y5R5 561 aa13.91□□□□□ -0.18
NR1I3-228ENST00000511676 PTPRMP28827 1452 aa13.91□□□□□ -0.18
NR1I3-228ENST00000511676 SUPT6HQ7KZ85 1726 aaKnown RBP13.9□□□□□ -0.18
NR1I3-228ENST00000511676 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.9□□□□□ -0.18
NR1I3-228ENST00000511676 FANCAO15360 1455 aa13.9□□□□□ -0.18
NR1I3-228ENST00000511676 PCGF6Q9BYE7 350 aa13.89□□□□□ -0.19
NR1I3-228ENST00000511676 CDK13Q14004 1512 aaKnown RBP13.88□□□□□ -0.19
NR1I3-228ENST00000511676 ESF1Q9H501 851 aaKnown RBP13.87□□□□□ -0.19
NR1I3-228ENST00000511676 ATP1B4Q9UN42 357 aaPredicted RBP13.87□□□□□ -0.19
NR1I3-228ENST00000511676 TROQ12816 1431 aaPredicted RBP13.87□□□□□ -0.19
NR1I3-228ENST00000511676 NCOA2Q15596 1464 aa13.86□□□□□ -0.19
NR1I3-228ENST00000511676 PPARGC1BQ86YN6 1023 aaKnown RBP13.85□□□□□ -0.19
NR1I3-228ENST00000511676 MYT1LQ9UL68 1186 aa13.85□□□□□ -0.19
NR1I3-228ENST00000511676 CCNB3Q8WWL7 1395 aa13.84□□□□□ -0.19
NR1I3-228ENST00000511676 PLCH2O75038 1416 aa13.83□□□□□ -0.2
NR1I3-228ENST00000511676 MYOM3Q5VTT5 1437 aa13.83□□□□□ -0.2
NR1I3-228ENST00000511676 ADAMTSL3P82987 1691 aa13.83□□□□□ -0.2
NR1I3-228ENST00000511676 MIA2Q96PC5 1412 aa13.82□□□□□ -0.2
NR1I3-228ENST00000511676 FGD6Q6ZV73 1430 aa13.81□□□□□ -0.2
NR1I3-228ENST00000511676 KCNA4P22459 653 aa13.81□□□□□ -0.2
NR1I3-228ENST00000511676 BCORL1Q5H9F3 1711 aa13.81□□□□□ -0.2
NR1I3-228ENST00000511676 SCAPERQ9BY12 1400 aa13.8□□□□□ -0.2
NR1I3-228ENST00000511676 KIF14Q15058 1648 aa13.79□□□□□ -0.2
NR1I3-228ENST00000511676 TCOF1Q13428 1488 aaKnown RBP13.79□□□□□ -0.2
NR1I3-228ENST00000511676 ZFYVE16Q7Z3T8 1539 aa13.79□□□□□ -0.2
NR1I3-228ENST00000511676 ARHGEF40Q8TER5 1519 aa13.79□□□□□ -0.2
NR1I3-228ENST00000511676 ATP10AO60312 1499 aa13.78□□□□□ -0.2
NR1I3-228ENST00000511676 ZMYM4Q5VZL5 1548 aa13.78□□□□□ -0.2
NR1I3-228ENST00000511676 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.78□□□□□ -0.2
NR1I3-228ENST00000511676 ZNF518AQ6AHZ1 1483 aa13.77□□□□□ -0.21
NR1I3-228ENST00000511676 PPP4R3CPQ6ZMV5 832 aa13.77□□□□□ -0.21
NR1I3-228ENST00000511676 ITSN2Q9NZM3 1697 aa13.77□□□□□ -0.21
NR1I3-228ENST00000511676 C9orf84Q5VXU9 1444 aa13.75□□□□□ -0.21
NR1I3-228ENST00000511676 MLECQ14165 292 aa13.74□□□□□ -0.21
NR1I3-228ENST00000511676 RICTORQ6R327 1708 aa13.73□□□□□ -0.21
NR1I3-228ENST00000511676 MADDQ8WXG6 1647 aa13.72□□□□□ -0.21
NR1I3-228ENST00000511676 PTPN23Q9H3S7 1636 aa13.72□□□□□ -0.21
NR1I3-228ENST00000511676 SETD1BQ9UPS6 1966 aaKnown RBP13.71□□□□□ -0.21
NR1I3-228ENST00000511676 MSH5O43196 834 aa13.71□□□□□ -0.21
NR1I3-228ENST00000511676 CERKQ8TCT0 537 aa13.71□□□□□ -0.21
NR1I3-228ENST00000511676 LMTK3Q96Q04 1460 aa13.71□□□□□ -0.21
NR1I3-228ENST00000511676 FRMPD1Q5SYB0 1578 aa13.71□□□□□ -0.22
NR1I3-228ENST00000511676 GPATCH8Q9UKJ3 1502 aaKnown RBP13.69□□□□□ -0.22
NR1I3-228ENST00000511676 YEATS2Q9ULM3 1422 aa13.69□□□□□ -0.22
NR1I3-228ENST00000511676 ARHGAP5Q13017 1502 aa13.69□□□□□ -0.22
NR1I3-228ENST00000511676 UHRF1BP1Q6BDS2 1440 aa13.68□□□□□ -0.22
NR1I3-228ENST00000511676 CNTLNQ9NXG0 1405 aa13.68□□□□□ -0.22
NR1I3-228ENST00000511676 RIMS1Q86UR5 1692 aaKnown RBP13.68□□□□□ -0.22
NR1I3-228ENST00000511676 MYO5CQ9NQX4 1742 aa13.67□□□□□ -0.22
NR1I3-228ENST00000511676 PREX2Q70Z35 1606 aa13.67□□□□□ -0.22
NR1I3-228ENST00000511676 AFAP1Q8N556 730 aa13.66□□□□□ -0.22
NR1I3-228ENST00000511676 MLH3Q9UHC1 1453 aa13.66□□□□□ -0.22
NR1I3-228ENST00000511676 TTC37Q6PGP7 1564 aa13.66□□□□□ -0.22
NR1I3-228ENST00000511676 HSPA2P54652 639 aa13.65□□□□□ -0.22
NR1I3-228ENST00000511676 ACIN1Q9UKV3 1341 aaKnown RBP13.64□□□□□ -0.23
NR1I3-228ENST00000511676 CDC42BPAQ5VT25 1732 aa13.64□□□□□ -0.23
NR1I3-228ENST00000511676 PLEKHH2Q8IVE3 1493 aa13.64□□□□□ -0.23
NR1I3-228ENST00000511676 HRCP23327 699 aa13.64□□□□□ -0.23
NR1I3-228ENST00000511676 CAMSAP2Q08AD1 1489 aa13.63□□□□□ -0.23
NR1I3-228ENST00000511676 DNMT1P26358 1616 aaKnown RBP13.63□□□□□ -0.23
NR1I3-228ENST00000511676 ARHGEF12Q9NZN5 1544 aa13.63□□□□□ -0.23
NR1I3-228ENST00000511676 FER1L4A9Z1Z3 1794 aa13.63□□□□□ -0.23
NR1I3-228ENST00000511676 FAM50AQ14320 339 aaKnown RBP13.62□□□□□ -0.23
NR1I3-228ENST00000511676 RSPH4AQ5TD94 716 aa13.62□□□□□ -0.23
NR1I3-228ENST00000511676 CFDP1Q9UEE9 299 aaPredicted RBP13.62□□□□□ -0.23
NR1I3-228ENST00000511676 HFM1A2PYH4 1435 aa13.62□□□□□ -0.23
NR1I3-228ENST00000511676 TRAPPC8Q9Y2L5 1435 aa13.62□□□□□ -0.23
NR1I3-228ENST00000511676 REREQ9P2R6 1566 aa13.62□□□□□ -0.23
NR1I3-228ENST00000511676 SHANK2Q9UPX8 1470 aa13.61□□□□□ -0.23
NR1I3-228ENST00000511676 ROCK1Q13464 1354 aa13.61□□□□□ -0.23
NR1I3-228ENST00000511676 ARHGEF5Q12774 1597 aa13.61□□□□□ -0.23
NR1I3-228ENST00000511676 AGLP35573 1532 aa13.6□□□□□ -0.23
NR1I3-228ENST00000511676 KIAA1107Q9UPP5 1409 aa13.6□□□□□ -0.23
NR1I3-228ENST00000511676 SPAG9O60271 1321 aaKnown RBP13.6□□□□□ -0.23
NR1I3-228ENST00000511676 PREX1Q8TCU6 1659 aa13.59□□□□□ -0.23
NR1I3-228ENST00000511676 KDM5CP41229 1560 aa13.59□□□□□ -0.23
NR1I3-228ENST00000511676 PTPRTO14522 1441 aa13.59□□□□□ -0.23
NR1I3-228ENST00000511676 DAPK1P53355 1430 aa13.59□□□□□ -0.23
NR1I3-228ENST00000511676 SETD5Q9C0A6 1442 aa13.58□□□□□ -0.24
NR1I3-228ENST00000511676 ADGRL2O95490 1459 aa13.57□□□□□ -0.24
NR1I3-228ENST00000511676 CDC42BPBQ9Y5S2 1711 aa13.57□□□□□ -0.24
NR1I3-228ENST00000511676 ZEB1P37275 1124 aaPredicted RBP13.57□□□□□ -0.24
NR1I3-228ENST00000511676 PKD2Q13563 968 aa13.57□□□□□ -0.24
NR1I3-228ENST00000511676 ZNF777Q9ULD5 760 aaPredicted RBP13.57□□□□□ -0.24
NR1I3-228ENST00000511676 CLSPNQ9HAW4 1339 aa13.57□□□□□ -0.24
NR1I3-228ENST00000511676 CROCC2H7BZ55 1655 aa13.56□□□□□ -0.24
NR1I3-228ENST00000511676 NPATQ14207 1427 aa13.56□□□□□ -0.24
NR1I3-228ENST00000511676 CEBPAP49715 358 aaPredicted RBP13.56□□□□□ -0.24
NR1I3-228ENST00000511676 ABCC5O15440 1437 aa13.56□□□□□ -0.24
NR1I3-228ENST00000511676 SAMD9LQ8IVG5 1584 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms