RNA–Protein interactions for RNA: ENST00000511676.5

NR1I3-228, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 1,061 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-228ENST00000511676 NISCHQ9Y2I1 1504 aa20.91■□□□□ 0.94
NR1I3-228ENST00000511676 AEBP2Q6ZN18 517 aaPredicted RBP19.32■□□□□ 0.68
NR1I3-228ENST00000511676 CHIC1Q5VXU3 224 aa19.03■□□□□ 0.64
NR1I3-228ENST00000511676 ABCC9O60706 1549 aa18.79■□□□□ 0.6
NR1I3-228ENST00000511676 CCDC180Q9P1Z9 1646 aa18.78■□□□□ 0.6
NR1I3-228ENST00000511676 RB1CC1Q8TDY2 1594 aa18.01■□□□□ 0.47
NR1I3-228ENST00000511676 NACADO15069 1562 aa17.88■□□□□ 0.45
NR1I3-228ENST00000511676 DCAF8L2P0C7V8 631 aa17.8■□□□□ 0.44
NR1I3-228ENST00000511676 MYO15BQ96JP2 1530 aa17.66■□□□□ 0.42
NR1I3-228ENST00000511676 DNAJC5BQ9UF47 199 aa17.61■□□□□ 0.41
NR1I3-228ENST00000511676 ZCCHC6Q5VYS8 1495 aaKnown RBP17.58■□□□□ 0.41
NR1I3-228ENST00000511676 PABPN1Q86U42 306 aaKnown RBP eCLIP17.5■□□□□ 0.39
NR1I3-228ENST00000511676 DCAF1Q9Y4B6 1507 aa17.46■□□□□ 0.39
NR1I3-228ENST00000511676 SHROOM4Q9ULL8 1493 aa17.37■□□□□ 0.37
NR1I3-228ENST00000511676 UNC13AQ9UPW8 1703 aa17.26■□□□□ 0.35
NR1I3-228ENST00000511676 BICRAQ9NZM4 1560 aa17.21■□□□□ 0.35
NR1I3-228ENST00000511676 CECR2Q9BXF3 1484 aa17.04■□□□□ 0.32
NR1I3-228ENST00000511676 CC2D2AQ9P2K1 1620 aa16.96■□□□□ 0.31
NR1I3-228ENST00000511676 SCRIBQ14160 1630 aa16.95■□□□□ 0.3
NR1I3-228ENST00000511676 EIF4G1Q04637 1599 aaKnown RBP16.94■□□□□ 0.3
NR1I3-228ENST00000511676 PHF23Q9BUL5 403 aaPredicted RBP16.85■□□□□ 0.29
NR1I3-228ENST00000511676 DNAJC5Q9H3Z4 198 aa16.55■□□□□ 0.24
NR1I3-228ENST00000511676 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
NR1I3-228ENST00000511676 CUX2O14529 1486 aa16.44■□□□□ 0.22
NR1I3-228ENST00000511676 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
NR1I3-228ENST00000511676 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
NR1I3-228ENST00000511676 ATAD2BQ9ULI0 1458 aa16.34■□□□□ 0.21
NR1I3-228ENST00000511676 HMGXB3Q12766 1538 aa16.31■□□□□ 0.2
NR1I3-228ENST00000511676 BAZ1AQ9NRL2 1556 aaPredicted RBP16.28■□□□□ 0.2
NR1I3-228ENST00000511676 BAZ1BQ9UIG0 1483 aaKnown RBP16.23■□□□□ 0.19
NR1I3-228ENST00000511676 SMARCA4P51532 1647 aa16.23■□□□□ 0.19
NR1I3-228ENST00000511676 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
NR1I3-228ENST00000511676 PDS5BQ9NTI5 1447 aa16.17■□□□□ 0.18
NR1I3-228ENST00000511676 PEG3Q9GZU2 1588 aa16.14■□□□□ 0.17
NR1I3-228ENST00000511676 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
NR1I3-228ENST00000511676 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
NR1I3-228ENST00000511676 MROH2BQ7Z745 1585 aa16.06■□□□□ 0.16
NR1I3-228ENST00000511676 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
NR1I3-228ENST00000511676 CADPSQ9ULU8 1353 aa16.01■□□□□ 0.15
NR1I3-228ENST00000511676 NESP48681 1621 aa16.01■□□□□ 0.15
NR1I3-228ENST00000511676 THOC2Q8NI27 1593 aaKnown RBP15.89■□□□□ 0.13
NR1I3-228ENST00000511676 WIZO95785 1651 aa15.88■□□□□ 0.13
NR1I3-228ENST00000511676 MRC2Q9UBG0 1479 aa15.87■□□□□ 0.13
NR1I3-228ENST00000511676 TOP2AP11388 1531 aaKnown RBP15.87■□□□□ 0.13
NR1I3-228ENST00000511676 CEP164Q9UPV0 1460 aa15.82■□□□□ 0.12
NR1I3-228ENST00000511676 KIF21AQ7Z4S6 1674 aa15.79■□□□□ 0.12
NR1I3-228ENST00000511676 OSCARQ8IYS5 282 aa15.79■□□□□ 0.12
NR1I3-228ENST00000511676 WDR62O43379 1518 aa15.78■□□□□ 0.12
NR1I3-228ENST00000511676 FANCD2Q9BXW9 1451 aa15.75■□□□□ 0.11
NR1I3-228ENST00000511676 CFTRP13569 1480 aa15.74■□□□□ 0.11
NR1I3-228ENST00000511676 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
NR1I3-228ENST00000511676 ABCC8Q09428 1581 aa15.63■□□□□ 0.09
NR1I3-228ENST00000511676 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
NR1I3-228ENST00000511676 IFT140Q96RY7 1462 aa15.54■□□□□ 0.08
NR1I3-228ENST00000511676 PLPPR3Q6T4P5 718 aa15.53■□□□□ 0.08
NR1I3-228ENST00000511676 URB2Q14146 1524 aaKnown RBP15.49■□□□□ 0.07
NR1I3-228ENST00000511676 PRDM2Q13029 1718 aa15.46■□□□□ 0.07
NR1I3-228ENST00000511676 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
NR1I3-228ENST00000511676 DNMBPQ6XZF7 1577 aa15.35■□□□□ 0.05
NR1I3-228ENST00000511676 FBLN2P98095 1184 aa15.34■□□□□ 0.05
NR1I3-228ENST00000511676 CYB5RLQ6IPT4 315 aa15.3■□□□□ 0.04
NR1I3-228ENST00000511676 ZNF608Q9ULD9 1512 aaPredicted RBP15.29■□□□□ 0.04
NR1I3-228ENST00000511676 WDR97A6NE52 1622 aa15.28■□□□□ 0.04
NR1I3-228ENST00000511676 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
NR1I3-228ENST00000511676 SOGA1O94964 1423 aa15.27■□□□□ 0.04
NR1I3-228ENST00000511676 RIMBP3CA6NJZ7 1639 aa15.27■□□□□ 0.03
NR1I3-228ENST00000511676 RIMBP3BA6NNM3 1639 aa15.27■□□□□ 0.03
NR1I3-228ENST00000511676 RIMBP3Q9UFD9 1639 aa15.27■□□□□ 0.03
NR1I3-228ENST00000511676 ARHGEF11O15085 1522 aa15.27■□□□□ 0.03
NR1I3-228ENST00000511676 TRHP20396 242 aaPredicted RBP15.25■□□□□ 0.03
NR1I3-228ENST00000511676 EIF4G3O43432 1585 aaKnown RBP15.24■□□□□ 0.03
NR1I3-228ENST00000511676 AQRO60306 1485 aaKnown RBP eCLIP15.23■□□□□ 0.03
NR1I3-228ENST00000511676 POLA1P09884 1462 aaPredicted RBP15.21■□□□□ 0.03
NR1I3-228ENST00000511676 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
NR1I3-228ENST00000511676 TARBP1Q13395 1621 aaKnown RBP15.18■□□□□ 0.02
NR1I3-228ENST00000511676 MAGI1Q96QZ7 1491 aaPredicted RBP15.18■□□□□ 0.02
NR1I3-228ENST00000511676 GRIN2BQ13224 1484 aa15.15■□□□□ 0.02
NR1I3-228ENST00000511676 TDRD9Q8NDG6 1382 aaKnown RBP15.15■□□□□ 0.02
NR1I3-228ENST00000511676 SYNJ1O43426 1573 aa15.15■□□□□ 0.02
NR1I3-228ENST00000511676 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
NR1I3-228ENST00000511676 BIVM-ERCC5R4GMW8 1640 aa15.14■□□□□ 0.01
NR1I3-228ENST00000511676 FOXD1Q16676 465 aa15.11■□□□□ 0.01
NR1I3-228ENST00000511676 CHD1O14646 1710 aa15.09■□□□□ 0.01
NR1I3-228ENST00000511676 SYNJ2O15056 1496 aa15.09■□□□□ 0.01
NR1I3-228ENST00000511676 FGD5Q6ZNL6 1462 aa15.09■□□□□ 0.01
NR1I3-228ENST00000511676 RAD54L2Q9Y4B4 1467 aa15.09■□□□□ 0.01
NR1I3-228ENST00000511676 EEA1Q15075 1411 aa15.08■□□□□ 0
NR1I3-228ENST00000511676 SNAPC4Q5SXM2 1469 aa15.08■□□□□ 0
NR1I3-228ENST00000511676 GAPVD1Q14C86 1478 aa15.06■□□□□ 0
NR1I3-228ENST00000511676 ARAP1Q96P48 1450 aa15.05■□□□□ -0
NR1I3-228ENST00000511676 CUX1P39880 1505 aa15.05■□□□□ -0
NR1I3-228ENST00000511676 ABCA10Q8WWZ4 1543 aa15□□□□□ -0.01
NR1I3-228ENST00000511676 CLASP1Q7Z460 1538 aa14.98□□□□□ -0.01
NR1I3-228ENST00000511676 NPM1P06748 294 aaKnown RBP eCLIP14.93□□□□□ -0.02
NR1I3-228ENST00000511676 FHAD1B1AJZ9 1412 aa14.91□□□□□ -0.02
NR1I3-228ENST00000511676 PBRM1Q86U86 1689 aa14.88□□□□□ -0.03
NR1I3-228ENST00000511676 GRIN2AQ12879 1464 aa14.88□□□□□ -0.03
NR1I3-228ENST00000511676 KIF27Q86VH2 1401 aa14.86□□□□□ -0.03
NR1I3-228ENST00000511676 ERICH3Q5RHP9 1530 aa14.86□□□□□ -0.03
NR1I3-228ENST00000511676 ABCA5Q8WWZ7 1642 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms