RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 SCAPERQ9BY12 1400 aa22.14■■□□□ 1.13
DDX41-212ENST00000511040 PREX2Q70Z35 1606 aa22.13■■□□□ 1.13
DDX41-212ENST00000511040 EHBP1L1Q8N3D4 1523 aa22.12■■□□□ 1.13
DDX41-212ENST00000511040 CDC42BPAQ5VT25 1732 aa22.12■■□□□ 1.13
DDX41-212ENST00000511040 RICTORQ6R327 1708 aa22.12■■□□□ 1.13
DDX41-212ENST00000511040 TIAM1Q13009 1591 aa22.12■■□□□ 1.13
DDX41-212ENST00000511040 GPATCH8Q9UKJ3 1502 aaKnown RBP22.09■■□□□ 1.13
DDX41-212ENST00000511040 CCNB3Q8WWL7 1395 aa22.09■■□□□ 1.13
DDX41-212ENST00000511040 KDM4FA0A1W2PPD8 638 aa22.08■■□□□ 1.13
DDX41-212ENST00000511040 ZNF777Q9ULD5 760 aaPredicted RBP22.08■■□□□ 1.13
DDX41-212ENST00000511040 POGZQ7Z3K3 1410 aa22.07■■□□□ 1.12
DDX41-212ENST00000511040 KANK4Q5T7N3 995 aaPredicted RBP22.04■■□□□ 1.12
DDX41-212ENST00000511040 ZMYM4Q5VZL5 1548 aa22.03■■□□□ 1.12
DDX41-212ENST00000511040 AFAP1Q8N556 730 aa22.03■■□□□ 1.12
DDX41-212ENST00000511040 CFDP1Q9UEE9 299 aaPredicted RBP22.03■■□□□ 1.12
DDX41-212ENST00000511040 LRRC9Q6ZRR7 1453 aa22.03■■□□□ 1.12
DDX41-212ENST00000511040 ARHGEF12Q9NZN5 1544 aa22.02■■□□□ 1.12
DDX41-212ENST00000511040 NCOA2Q15596 1464 aa22.02■■□□□ 1.12
DDX41-212ENST00000511040 ABCC1P33527 1531 aa22.01■■□□□ 1.11
DDX41-212ENST00000511040 SUPT6HQ7KZ85 1726 aaKnown RBP22.01■■□□□ 1.11
DDX41-212ENST00000511040 YEATS2Q9ULM3 1422 aa22.01■■□□□ 1.11
DDX41-212ENST00000511040 ARHGEF40Q8TER5 1519 aa22.01■■□□□ 1.11
DDX41-212ENST00000511040 SAMD9LQ8IVG5 1584 aa22■■□□□ 1.11
DDX41-212ENST00000511040 MAP3K1Q13233 1512 aa22■■□□□ 1.11
DDX41-212ENST00000511040 ZFYVE16Q7Z3T8 1539 aa22■■□□□ 1.11
DDX41-212ENST00000511040 TRAPPC8Q9Y2L5 1435 aa21.99■■□□□ 1.11
DDX41-212ENST00000511040 APLP2Q06481 763 aa21.99■■□□□ 1.11
DDX41-212ENST00000511040 ITSN2Q9NZM3 1697 aa21.98■■□□□ 1.11
DDX41-212ENST00000511040 ZNF518AQ6AHZ1 1483 aa21.98■■□□□ 1.11
DDX41-212ENST00000511040 MYT1LQ9UL68 1186 aa21.97■■□□□ 1.11
DDX41-212ENST00000511040 ARID4BQ4LE39 1312 aaPredicted RBP21.97■■□□□ 1.11
DDX41-212ENST00000511040 HNRNPMP52272 730 aaKnown RBP eCLIP21.96■■□□□ 1.11
DDX41-212ENST00000511040 ZNF644Q9H582 1327 aaPredicted RBP21.96■■□□□ 1.11
DDX41-212ENST00000511040 MAGI2Q86UL8 1455 aa21.96■■□□□ 1.11
DDX41-212ENST00000511040 SYCP2Q9BX26 1530 aa21.96■■□□□ 1.11
DDX41-212ENST00000511040 KDM5CP41229 1560 aa21.95■■□□□ 1.1
DDX41-212ENST00000511040 HECW2Q9P2P5 1572 aa21.91■■□□□ 1.1
DDX41-212ENST00000511040 PLEKHH2Q8IVE3 1493 aa21.9■■□□□ 1.1
DDX41-212ENST00000511040 KIAA1107Q9UPP5 1409 aa21.89■■□□□ 1.1
DDX41-212ENST00000511040 SIGLEC1Q9BZZ2 1709 aa21.89■■□□□ 1.1
DDX41-212ENST00000511040 ATP10AO60312 1499 aa21.88■■□□□ 1.09
DDX41-212ENST00000511040 MLH3Q9UHC1 1453 aa21.87■■□□□ 1.09
DDX41-212ENST00000511040 C9orf84Q5VXU9 1444 aa21.86■■□□□ 1.09
DDX41-212ENST00000511040 SPAG9O60271 1321 aaKnown RBP21.85■■□□□ 1.09
DDX41-212ENST00000511040 ABCA6Q8N139 1617 aa21.85■■□□□ 1.09
DDX41-212ENST00000511040 DIP2CQ9Y2E4 1556 aa21.85■■□□□ 1.09
DDX41-212ENST00000511040 CAMSAP2Q08AD1 1489 aa21.84■■□□□ 1.09
DDX41-212ENST00000511040 BCORL1Q5H9F3 1711 aa21.84■■□□□ 1.09
DDX41-212ENST00000511040 MLECQ14165 292 aa21.84■■□□□ 1.09
DDX41-212ENST00000511040 KIDINS220Q9ULH0 1771 aa21.84■■□□□ 1.09
DDX41-212ENST00000511040 MBD5Q9P267 1494 aa21.83■■□□□ 1.08
DDX41-212ENST00000511040 ADAMTSL3P82987 1691 aa21.82■■□□□ 1.08
DDX41-212ENST00000511040 MYOM3Q5VTT5 1437 aa21.81■■□□□ 1.08
DDX41-212ENST00000511040 MADDQ8WXG6 1647 aa21.79■■□□□ 1.08
DDX41-212ENST00000511040 ATP7AQ04656 1500 aa21.78■■□□□ 1.08
DDX41-212ENST00000511040 INO80Q9ULG1 1556 aaPredicted RBP21.77■■□□□ 1.08
DDX41-212ENST00000511040 MIA2Q96PC5 1412 aa21.75■■□□□ 1.07
DDX41-212ENST00000511040 CCDC141Q6ZP82 1450 aa21.75■■□□□ 1.07
DDX41-212ENST00000511040 PPARGC1BQ86YN6 1023 aaKnown RBP21.74■■□□□ 1.07
DDX41-212ENST00000511040 REREQ9P2R6 1566 aa21.74■■□□□ 1.07
DDX41-212ENST00000511040 RIMS1Q86UR5 1692 aaKnown RBP21.73■■□□□ 1.07
DDX41-212ENST00000511040 PLPPR3Q6T4P5 718 aa21.73■■□□□ 1.07
DDX41-212ENST00000511040 PTPRMP28827 1452 aa21.72■■□□□ 1.07
DDX41-212ENST00000511040 ILDR1Q86SU0 546 aaPredicted RBP21.72■■□□□ 1.07
DDX41-212ENST00000511040 ARHGEF5Q12774 1597 aa21.71■■□□□ 1.07
DDX41-212ENST00000511040 RSPH4AQ5TD94 716 aa21.7■■□□□ 1.06
DDX41-212ENST00000511040 PTPN23Q9H3S7 1636 aa21.69■■□□□ 1.06
DDX41-212ENST00000511040 FGD6Q6ZV73 1430 aa21.69■■□□□ 1.06
DDX41-212ENST00000511040 A2MP01023 1474 aa21.69■■□□□ 1.06
DDX41-212ENST00000511040 FER1L4A9Z1Z3 1794 aa21.69■■□□□ 1.06
DDX41-212ENST00000511040 RTEL1-TNFRSF6BF6WH68 1400 aa21.68■■□□□ 1.06
DDX41-212ENST00000511040 AGLP35573 1532 aa21.68■■□□□ 1.06
DDX41-212ENST00000511040 TSPY4P0CV99 314 aa21.67■■□□□ 1.06
DDX41-212ENST00000511040 TSPY10P0CW01 314 aa21.67■■□□□ 1.06
DDX41-212ENST00000511040 ADGBQ8N7X0 1667 aa21.65■■□□□ 1.06
DDX41-212ENST00000511040 PLXNC1O60486 1568 aa21.64■■□□□ 1.05
DDX41-212ENST00000511040 TCOF1Q13428 1488 aaKnown RBP21.62■■□□□ 1.05
DDX41-212ENST00000511040 ABCC5O15440 1437 aa21.61■■□□□ 1.05
DDX41-212ENST00000511040 FAM50AQ14320 339 aaKnown RBP21.6■■□□□ 1.05
DDX41-212ENST00000511040 DHX29Q7Z478 1369 aaKnown RBP21.6■■□□□ 1.05
DDX41-212ENST00000511040 CEBPAP49715 358 aaPredicted RBP21.59■■□□□ 1.05
DDX41-212ENST00000511040 MAST1Q9Y2H9 1570 aa21.59■■□□□ 1.05
DDX41-212ENST00000511040 GGT6Q6P531 493 aa21.58■■□□□ 1.05
DDX41-212ENST00000511040 ESF1Q9H501 851 aaKnown RBP21.58■■□□□ 1.05
DDX41-212ENST00000511040 DAPK1P53355 1430 aa21.57■■□□□ 1.04
DDX41-212ENST00000511040 CROCC2H7BZ55 1655 aa21.56■■□□□ 1.04
DDX41-212ENST00000511040 DNMT1P26358 1616 aaKnown RBP21.55■■□□□ 1.04
DDX41-212ENST00000511040 KIF3BO15066 747 aa21.55■■□□□ 1.04
DDX41-212ENST00000511040 CHIC2Q9UKJ5 165 aa21.54■■□□□ 1.04
DDX41-212ENST00000511040 SHANK2Q9UPX8 1470 aa21.52■■□□□ 1.04
DDX41-212ENST00000511040 RRP7BPQ9NSQ0 103 aa21.52■■□□□ 1.04
DDX41-212ENST00000511040 CNTLNQ9NXG0 1405 aa21.5■■□□□ 1.03
DDX41-212ENST00000511040 C3P01024 1663 aa21.5■■□□□ 1.03
DDX41-212ENST00000511040 KIF15Q9NS87 1388 aa21.49■■□□□ 1.03
DDX41-212ENST00000511040 CLTCQ00610 1675 aaKnown RBP21.49■■□□□ 1.03
DDX41-212ENST00000511040 ZMYM3Q14202 1370 aa21.46■■□□□ 1.03
DDX41-212ENST00000511040 DUOX2Q9NRD8 1548 aa21.45■■□□□ 1.02
DDX41-212ENST00000511040 ANKRD30AQ9BXX3 1397 aa21.45■■□□□ 1.02
DDX41-212ENST00000511040 LMTK3Q96Q04 1460 aa21.45■■□□□ 1.02
DDX41-212ENST00000511040 ITGAEP38570 1179 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms