RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 NISCHQ9Y2I1 1504 aa33.98■■■■□ 3.03
DDX41-212ENST00000511040 CCDC180Q9P1Z9 1646 aa30.18■■■□□ 2.42
DDX41-212ENST00000511040 ABCC9O60706 1549 aa29.71■■■□□ 2.35
DDX41-212ENST00000511040 DCAF8L2P0C7V8 631 aa28.54■■■□□ 2.16
DDX41-212ENST00000511040 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.15
DDX41-212ENST00000511040 NACADO15069 1562 aa28.4■■■□□ 2.14
DDX41-212ENST00000511040 ZCCHC6Q5VYS8 1495 aaKnown RBP28.28■■■□□ 2.12
DDX41-212ENST00000511040 MYO15BQ96JP2 1530 aa28.15■■■□□ 2.1
DDX41-212ENST00000511040 DCAF1Q9Y4B6 1507 aa28.03■■■□□ 2.08
DDX41-212ENST00000511040 UNC13AQ9UPW8 1703 aa27.85■■■□□ 2.05
DDX41-212ENST00000511040 PABPN1Q86U42 306 aaKnown RBP eCLIP27.79■■■□□ 2.046e-7■■■■■ 27.5
DDX41-212ENST00000511040 SCRIBQ14160 1630 aa27.65■■■□□ 2.02
DDX41-212ENST00000511040 BICRAQ9NZM4 1560 aa27.63■■■□□ 2.01
DDX41-212ENST00000511040 DNAJC5BQ9UF47 199 aa27.34■■□□□ 1.97
DDX41-212ENST00000511040 SHROOM4Q9ULL8 1493 aa27.22■■□□□ 1.95
DDX41-212ENST00000511040 EIF4G1Q04637 1599 aaKnown RBP26.9■■□□□ 1.9
DDX41-212ENST00000511040 CC2D2AQ9P2K1 1620 aa26.83■■□□□ 1.88
DDX41-212ENST00000511040 CECR2Q9BXF3 1484 aa26.66■■□□□ 1.86
DDX41-212ENST00000511040 SMARCA4P51532 1647 aa26.38■■□□□ 1.81
DDX41-212ENST00000511040 BAZ1AQ9NRL2 1556 aaPredicted RBP26.32■■□□□ 1.8
DDX41-212ENST00000511040 ATAD2BQ9ULI0 1458 aa26.25■■□□□ 1.79
DDX41-212ENST00000511040 MROH2BQ7Z745 1585 aa26.23■■□□□ 1.79
DDX41-212ENST00000511040 NCAPD3P42695 1498 aa26.21■■□□□ 1.79
DDX41-212ENST00000511040 SMARCA2P51531 1590 aa26.19■■□□□ 1.78
DDX41-212ENST00000511040 HMGXB3Q12766 1538 aa26.07■■□□□ 1.76
DDX41-212ENST00000511040 PEG3Q9GZU2 1588 aa26.06■■□□□ 1.76
DDX41-212ENST00000511040 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
DDX41-212ENST00000511040 WIZO95785 1651 aa25.95■■□□□ 1.74
DDX41-212ENST00000511040 RSF1Q96T23 1441 aaPredicted RBP25.89■■□□□ 1.74
DDX41-212ENST00000511040 NESP48681 1621 aa25.69■■□□□ 1.7
DDX41-212ENST00000511040 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
DDX41-212ENST00000511040 ERCC6Q03468 1493 aa25.59■■□□□ 1.69
DDX41-212ENST00000511040 LAMC3Q9Y6N6 1575 aa25.52■■□□□ 1.68
DDX41-212ENST00000511040 CADPSQ9ULU8 1353 aa25.47■■□□□ 1.67
DDX41-212ENST00000511040 PDS5BQ9NTI5 1447 aa25.37■■□□□ 1.65
DDX41-212ENST00000511040 CCDC88BA6NC98 1476 aa25.36■■□□□ 1.65
DDX41-212ENST00000511040 KIF21AQ7Z4S6 1674 aa25.35■■□□□ 1.65
DDX41-212ENST00000511040 SUPT5HO00267 1087 aaKnown RBP25.3■■□□□ 1.64
DDX41-212ENST00000511040 CFTRP13569 1480 aa25.29■■□□□ 1.64
DDX41-212ENST00000511040 CUX2O14529 1486 aa25.26■■□□□ 1.63
DDX41-212ENST00000511040 THOC2Q8NI27 1593 aaKnown RBP25.25■■□□□ 1.63
DDX41-212ENST00000511040 FANCD2Q9BXW9 1451 aa25.2■■□□□ 1.62
DDX41-212ENST00000511040 CEP164Q9UPV0 1460 aa25.16■■□□□ 1.62
DDX41-212ENST00000511040 MRC2Q9UBG0 1479 aa25.14■■□□□ 1.61
DDX41-212ENST00000511040 DNAJC5Q9H3Z4 198 aa25.12■■□□□ 1.61
DDX41-212ENST00000511040 PRDM2Q13029 1718 aa25.08■■□□□ 1.61
DDX41-212ENST00000511040 WDR62O43379 1518 aa25.04■■□□□ 1.6
DDX41-212ENST00000511040 URB2Q14146 1524 aaKnown RBP24.96■■□□□ 1.59
DDX41-212ENST00000511040 TOPBP1Q92547 1522 aa24.79■■□□□ 1.56
DDX41-212ENST00000511040 DNMBPQ6XZF7 1577 aa24.74■■□□□ 1.55
DDX41-212ENST00000511040 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
DDX41-212ENST00000511040 IFT140Q96RY7 1462 aa24.63■■□□□ 1.53
DDX41-212ENST00000511040 CUX1P39880 1505 aa24.61■■□□□ 1.53
DDX41-212ENST00000511040 ZNF608Q9ULD9 1512 aaPredicted RBP24.58■■□□□ 1.53
DDX41-212ENST00000511040 POLA1P09884 1462 aaPredicted RBP24.58■■□□□ 1.52
DDX41-212ENST00000511040 FGD5Q6ZNL6 1462 aa24.52■■□□□ 1.52
DDX41-212ENST00000511040 RAD54L2Q9Y4B4 1467 aa24.52■■□□□ 1.52
DDX41-212ENST00000511040 TARBP1Q13395 1621 aaKnown RBP24.5■■□□□ 1.51
DDX41-212ENST00000511040 SOGA1O94964 1423 aa24.49■■□□□ 1.51
DDX41-212ENST00000511040 EIF4G3O43432 1585 aaKnown RBP24.44■■□□□ 1.5
DDX41-212ENST00000511040 AQRO60306 1485 aaKnown RBP eCLIP24.44■■□□□ 1.51e-7■■■■■ 52.5
DDX41-212ENST00000511040 WRNQ14191 1432 aaPredicted RBP eCLIP24.41■■□□□ 1.5
DDX41-212ENST00000511040 TDRD9Q8NDG6 1382 aaKnown RBP24.39■■□□□ 1.49
DDX41-212ENST00000511040 SYNJ1O43426 1573 aa24.37■■□□□ 1.49
DDX41-212ENST00000511040 TOP2BQ02880 1626 aa24.34■■□□□ 1.49
DDX41-212ENST00000511040 BIVM-ERCC5R4GMW8 1640 aa24.33■■□□□ 1.49
DDX41-212ENST00000511040 WDR97A6NE52 1622 aa24.28■■□□□ 1.48
DDX41-212ENST00000511040 OSCARQ8IYS5 282 aa24.26■■□□□ 1.47
DDX41-212ENST00000511040 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
DDX41-212ENST00000511040 GAPVD1Q14C86 1478 aa24.19■■□□□ 1.46
DDX41-212ENST00000511040 SNAPC4Q5SXM2 1469 aa24.19■■□□□ 1.46
DDX41-212ENST00000511040 FBLN2P98095 1184 aa24.19■■□□□ 1.46
DDX41-212ENST00000511040 GRIN2BQ13224 1484 aa24.19■■□□□ 1.46
DDX41-212ENST00000511040 ABCA5Q8WWZ7 1642 aa24.16■■□□□ 1.46
DDX41-212ENST00000511040 CHD1O14646 1710 aa24.15■■□□□ 1.46
DDX41-212ENST00000511040 PBRM1Q86U86 1689 aa24.14■■□□□ 1.45
DDX41-212ENST00000511040 MAGI1Q96QZ7 1491 aaPredicted RBP24.11■■□□□ 1.45
DDX41-212ENST00000511040 CHMP7Q8WUX9 453 aaPredicted RBP24.07■■□□□ 1.44
DDX41-212ENST00000511040 SYNJ2O15056 1496 aa24.02■■□□□ 1.44
DDX41-212ENST00000511040 ADAMTS12P58397 1594 aa23.95■■□□□ 1.42
DDX41-212ENST00000511040 ERICH3Q5RHP9 1530 aa23.94■■□□□ 1.42
DDX41-212ENST00000511040 FHAD1B1AJZ9 1412 aa23.9■■□□□ 1.42
DDX41-212ENST00000511040 KIF27Q86VH2 1401 aa23.9■■□□□ 1.42
DDX41-212ENST00000511040 RIMBP3CA6NJZ7 1639 aa23.88■■□□□ 1.41
DDX41-212ENST00000511040 RIMBP3BA6NNM3 1639 aa23.88■■□□□ 1.41
DDX41-212ENST00000511040 RIMBP3Q9UFD9 1639 aa23.88■■□□□ 1.41
DDX41-212ENST00000511040 GRIN2AQ12879 1464 aa23.87■■□□□ 1.41
DDX41-212ENST00000511040 CLASP1Q7Z460 1538 aa23.86■■□□□ 1.41
DDX41-212ENST00000511040 TRIM41Q8WV44 630 aa23.86■■□□□ 1.41
DDX41-212ENST00000511040 ARHGEF11O15085 1522 aa23.85■■□□□ 1.41
DDX41-212ENST00000511040 IGF1RP08069 1367 aa23.82■■□□□ 1.4
DDX41-212ENST00000511040 CEP170Q5SW79 1584 aa23.78■■□□□ 1.4
DDX41-212ENST00000511040 NUP160Q12769 1436 aa23.76■■□□□ 1.39
DDX41-212ENST00000511040 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
DDX41-212ENST00000511040 CUL7Q14999 1698 aa23.71■■□□□ 1.39
DDX41-212ENST00000511040 CYB5RLQ6IPT4 315 aa23.7■■□□□ 1.38
DDX41-212ENST00000511040 ARAP1Q96P48 1450 aa23.68■■□□□ 1.38
DDX41-212ENST00000511040 CARMIL1Q5VZK9 1371 aa23.68■■□□□ 1.38
DDX41-212ENST00000511040 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
DDX41-212ENST00000511040 SHROOM2Q13796 1616 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms