RNA–Protein interactions for RNA: ENST00000510129.5

UBE2D3-229, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 3

Gene UBE2D3, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-229	ENST00000510129	SCAPER	Q9BY12	1400 aa		33.95	■■■■□ 3.02
UBE2D3-229	ENST00000510129	PREX2	Q70Z35	1606 aa		33.94	■■■■□ 3.02
UBE2D3-229	ENST00000510129	ZMYM4	Q5VZL5	1548 aa		33.94	■■■■□ 3.02
UBE2D3-229	ENST00000510129	POGZ	Q7Z3K3	1410 aa		33.92	■■■■□ 3.02
UBE2D3-229	ENST00000510129	VPS8	Q8N3P4	1428 aa		33.92	■■■■□ 3.02
UBE2D3-229	ENST00000510129	MAGI2	Q86UL8	1455 aa		33.92	■■■■□ 3.02
UBE2D3-229	ENST00000510129	CDC42BPB	Q9Y5S2	1711 aa		33.9	■■■■□ 3.02
UBE2D3-229	ENST00000510129	EHBP1L1	Q8N3D4	1523 aa		33.88	■■■■□ 3.01
UBE2D3-229	ENST00000510129	ARHGEF40	Q8TER5	1519 aa		33.87	■■■■□ 3.01
UBE2D3-229	ENST00000510129	CDC42BPA	Q5VT25	1732 aa		33.85	■■■■□ 3.01
UBE2D3-229	ENST00000510129	ZNF518A	Q6AHZ1	1483 aa		33.85	■■■■□ 3.01
UBE2D3-229	ENST00000510129	ZFYVE16	Q7Z3T8	1539 aa		33.82	■■■■□ 3
UBE2D3-229	ENST00000510129	CCNB3	Q8WWL7	1395 aa		33.8	■■■■□ 3
UBE2D3-229	ENST00000510129	GPATCH8	Q9UKJ3	1502 aa	Known RBP	33.79	■■■■□ 3
UBE2D3-229	ENST00000510129	ABCC1	P33527	1531 aa		33.77	■■■■□ 3
UBE2D3-229	ENST00000510129	TIAM1	Q13009	1591 aa		33.77	■■■■□ 3
UBE2D3-229	ENST00000510129	KDM5C	P41229	1560 aa		33.75	■■■□□ 2.99
UBE2D3-229	ENST00000510129	MAP3K1	Q13233	1512 aa		33.74	■■■□□ 2.99
UBE2D3-229	ENST00000510129	PLEKHH2	Q8IVE3	1493 aa		33.72	■■■□□ 2.99
UBE2D3-229	ENST00000510129	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.72	■■■□□ 2.99
UBE2D3-229	ENST00000510129	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.71	■■■□□ 2.99
UBE2D3-229	ENST00000510129	ITSN2	Q9NZM3	1697 aa		33.71	■■■□□ 2.99
UBE2D3-229	ENST00000510129	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.69	■■■□□ 2.98
UBE2D3-229	ENST00000510129	YEATS2	Q9ULM3	1422 aa		33.69	■■■□□ 2.98
UBE2D3-229	ENST00000510129	AFAP1	Q8N556	730 aa		33.68	■■■□□ 2.98
UBE2D3-229	ENST00000510129	HECW2	Q9P2P5	1572 aa		33.67	■■■□□ 2.98
UBE2D3-229	ENST00000510129	ATP10A	O60312	1499 aa		33.66	■■■□□ 2.98
UBE2D3-229	ENST00000510129	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.66	■■■□□ 2.98
UBE2D3-229	ENST00000510129	KIAA1107	Q9UPP5	1409 aa		33.66	■■■□□ 2.98
UBE2D3-229	ENST00000510129	SAMD9L	Q8IVG5	1584 aa		33.65	■■■□□ 2.98
UBE2D3-229	ENST00000510129	MLH3	Q9UHC1	1453 aa		33.65	■■■□□ 2.98
UBE2D3-229	ENST00000510129	BCORL1	Q5H9F3	1711 aa		33.65	■■■□□ 2.98
UBE2D3-229	ENST00000510129	ARHGEF12	Q9NZN5	1544 aa		33.63	■■■□□ 2.97
UBE2D3-229	ENST00000510129	C9orf84	Q5VXU9	1444 aa		33.63	■■■□□ 2.97
UBE2D3-229	ENST00000510129	MYT1L	Q9UL68	1186 aa		33.63	■■■□□ 2.97
UBE2D3-229	ENST00000510129	ADAMTSL3	P82987	1691 aa		33.63	■■■□□ 2.97
UBE2D3-229	ENST00000510129	LRRC9	Q6ZRR7	1453 aa		33.63	■■■□□ 2.97
UBE2D3-229	ENST00000510129	TRAPPC8	Q9Y2L5	1435 aa		33.62	■■■□□ 2.97
UBE2D3-229	ENST00000510129	NCOA2	Q15596	1464 aa		33.61	■■■□□ 2.97
UBE2D3-229	ENST00000510129	APLP2	Q06481	763 aa		33.6	■■■□□ 2.97
UBE2D3-229	ENST00000510129	SYCP2	Q9BX26	1530 aa		33.58	■■■□□ 2.97
UBE2D3-229	ENST00000510129	RERE	Q9P2R6	1566 aa		33.55	■■■□□ 2.96
UBE2D3-229	ENST00000510129	DIP2C	Q9Y2E4	1556 aa		33.52	■■■□□ 2.96
UBE2D3-229	ENST00000510129	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.5	■■■□□ 2.95	4e-13	■■■■■ 32.7
UBE2D3-229	ENST00000510129	MADD	Q8WXG6	1647 aa		33.49	■■■□□ 2.95
UBE2D3-229	ENST00000510129	PTPRM	P28827	1452 aa		33.49	■■■□□ 2.95
UBE2D3-229	ENST00000510129	SPAG9	O60271	1321 aa	Known RBP	33.49	■■■□□ 2.95
UBE2D3-229	ENST00000510129	ABCA6	Q8N139	1617 aa		33.48	■■■□□ 2.95
UBE2D3-229	ENST00000510129	SIGLEC1	Q9BZZ2	1709 aa		33.47	■■■□□ 2.95
UBE2D3-229	ENST00000510129	KIDINS220	Q9ULH0	1771 aa		33.47	■■■□□ 2.95
UBE2D3-229	ENST00000510129	RSPH4A	Q5TD94	716 aa		33.45	■■■□□ 2.95
UBE2D3-229	ENST00000510129	KANK4	Q5T7N3	995 aa	Predicted RBP	33.43	■■■□□ 2.94
UBE2D3-229	ENST00000510129	AGL	P35573	1532 aa		33.43	■■■□□ 2.94
UBE2D3-229	ENST00000510129	ATP7A	Q04656	1500 aa		33.42	■■■□□ 2.94
UBE2D3-229	ENST00000510129	MBD5	Q9P267	1494 aa		33.41	■■■□□ 2.94
UBE2D3-229	ENST00000510129	INO80	Q9ULG1	1556 aa	Predicted RBP	33.4	■■■□□ 2.94
UBE2D3-229	ENST00000510129	ZNF644	Q9H582	1327 aa	Predicted RBP	33.4	■■■□□ 2.94
UBE2D3-229	ENST00000510129	CAMSAP2	Q08AD1	1489 aa		33.39	■■■□□ 2.94
UBE2D3-229	ENST00000510129	MLEC	Q14165	292 aa		33.38	■■■□□ 2.93
UBE2D3-229	ENST00000510129	RIMS1	Q86UR5	1692 aa	Known RBP	33.38	■■■□□ 2.93
UBE2D3-229	ENST00000510129	FER1L4	A9Z1Z3	1794 aa		33.37	■■■□□ 2.93
UBE2D3-229	ENST00000510129	MIA2	Q96PC5	1412 aa		33.36	■■■□□ 2.93
UBE2D3-229	ENST00000510129	RTEL1-TNFRSF6B	F6WH68	1400 aa		33.36	■■■□□ 2.93
UBE2D3-229	ENST00000510129	MYOM3	Q5VTT5	1437 aa		33.36	■■■□□ 2.93
UBE2D3-229	ENST00000510129	CCDC141	Q6ZP82	1450 aa		33.34	■■■□□ 2.93
UBE2D3-229	ENST00000510129	ARHGEF5	Q12774	1597 aa		33.31	■■■□□ 2.92
UBE2D3-229	ENST00000510129	ADGB	Q8N7X0	1667 aa		33.29	■■■□□ 2.92
UBE2D3-229	ENST00000510129	A2M	P01023	1474 aa		33.27	■■■□□ 2.92
UBE2D3-229	ENST00000510129	TSPY4	P0CV99	314 aa		33.25	■■■□□ 2.91
UBE2D3-229	ENST00000510129	TSPY10	P0CW01	314 aa		33.25	■■■□□ 2.91
UBE2D3-229	ENST00000510129	ESF1	Q9H501	851 aa	Known RBP	33.25	■■■□□ 2.91
UBE2D3-229	ENST00000510129	PLXNC1	O60486	1568 aa		33.24	■■■□□ 2.91
UBE2D3-229	ENST00000510129	CNTLN	Q9NXG0	1405 aa		33.19	■■■□□ 2.9
UBE2D3-229	ENST00000510129	DHX29	Q7Z478	1369 aa	Known RBP	33.14	■■■□□ 2.9
UBE2D3-229	ENST00000510129	MAST1	Q9Y2H9	1570 aa		33.13	■■■□□ 2.89
UBE2D3-229	ENST00000510129	PPP6R1	Q9UPN7	881 aa		33.13	■■■□□ 2.89
UBE2D3-229	ENST00000510129	PTPN23	Q9H3S7	1636 aa		33.12	■■■□□ 2.89
UBE2D3-229	ENST00000510129	FGD6	Q6ZV73	1430 aa		33.11	■■■□□ 2.89
UBE2D3-229	ENST00000510129	PLPPR3	Q6T4P5	718 aa		33.09	■■■□□ 2.89
UBE2D3-229	ENST00000510129	MROH2A	A6NES4	1674 aa		33.07	■■■□□ 2.88
UBE2D3-229	ENST00000510129	TCOF1	Q13428	1488 aa	Known RBP	33.06	■■■□□ 2.88
UBE2D3-229	ENST00000510129	LMTK3	Q96Q04	1460 aa		33.05	■■■□□ 2.88
UBE2D3-229	ENST00000510129	SHANK2	Q9UPX8	1470 aa		33.04	■■■□□ 2.88
UBE2D3-229	ENST00000510129	C3	P01024	1663 aa		33.02	■■■□□ 2.88
UBE2D3-229	ENST00000510129	GGT6	Q6P531	493 aa		33.02	■■■□□ 2.88
UBE2D3-229	ENST00000510129	FAM135A	Q9P2D6	1515 aa		33.01	■■■□□ 2.87
UBE2D3-229	ENST00000510129	PREX1	Q8TCU6	1659 aa		33.01	■■■□□ 2.87
UBE2D3-229	ENST00000510129	CEBPA	P49715	358 aa	Predicted RBP	33	■■■□□ 2.87
UBE2D3-229	ENST00000510129	CROCC2	H7BZ55	1655 aa		32.98	■■■□□ 2.87
UBE2D3-229	ENST00000510129	SETD1B	Q9UPS6	1966 aa	Known RBP	32.98	■■■□□ 2.87
UBE2D3-229	ENST00000510129	DNMT1	P26358	1616 aa	Known RBP	32.98	■■■□□ 2.87
UBE2D3-229	ENST00000510129	KIF3B	O15066	747 aa		32.97	■■■□□ 2.87
UBE2D3-229	ENST00000510129	ZMYM3	Q14202	1370 aa		32.96	■■■□□ 2.87
UBE2D3-229	ENST00000510129	ABCC5	O15440	1437 aa		32.95	■■■□□ 2.87
UBE2D3-229	ENST00000510129	DAPK1	P53355	1430 aa		32.95	■■■□□ 2.87
UBE2D3-229	ENST00000510129	CLTC	Q00610	1675 aa	Known RBP	32.94	■■■□□ 2.86
UBE2D3-229	ENST00000510129	NPAT	Q14207	1427 aa		32.94	■■■□□ 2.86
UBE2D3-229	ENST00000510129	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.93	■■■□□ 2.86
UBE2D3-229	ENST00000510129	UHRF1BP1	Q6BDS2	1440 aa		32.93	■■■□□ 2.86
UBE2D3-229	ENST00000510129	DUOX2	Q9NRD8	1548 aa		32.92	■■■□□ 2.86

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms