RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 FANCAO15360 1455 aa14.32□□□□□ -0.12
NUP54-207ENST00000508583 COL17A1Q9UMD9 1497 aaPredicted RBP14.32□□□□□ -0.12
NUP54-207ENST00000508583 SUPT6HQ7KZ85 1726 aaKnown RBP14.3□□□□□ -0.12
NUP54-207ENST00000508583 EFCAB2Q5VUJ9 269 aa14.3□□□□□ -0.12
NUP54-207ENST00000508583 PPP6R1Q9UPN7 881 aa14.3□□□□□ -0.12
NUP54-207ENST00000508583 LRRC9Q6ZRR7 1453 aa14.3□□□□□ -0.12
NUP54-207ENST00000508583 ARHGAP5Q13017 1502 aa14.29□□□□□ -0.12
NUP54-207ENST00000508583 PREX2Q70Z35 1606 aa14.28□□□□□ -0.12
NUP54-207ENST00000508583 CCNB3Q8WWL7 1395 aa14.28□□□□□ -0.12
NUP54-207ENST00000508583 CDC42BPAQ5VT25 1732 aa14.27□□□□□ -0.12
NUP54-207ENST00000508583 CDC42BPBQ9Y5S2 1711 aa14.27□□□□□ -0.12
NUP54-207ENST00000508583 AKNAQ7Z591 1439 aa14.27□□□□□ -0.12
NUP54-207ENST00000508583 ITSN2Q9NZM3 1697 aa14.26□□□□□ -0.13
NUP54-207ENST00000508583 FRMPD1Q5SYB0 1578 aa14.25□□□□□ -0.13
NUP54-207ENST00000508583 ADGRL1O94910 1474 aa14.25□□□□□ -0.13
NUP54-207ENST00000508583 NCOA2Q15596 1464 aa14.25□□□□□ -0.13
NUP54-207ENST00000508583 GPATCH8Q9UKJ3 1502 aaKnown RBP14.24□□□□□ -0.13
NUP54-207ENST00000508583 DENND4BO75064 1496 aaPredicted RBP14.24□□□□□ -0.13
NUP54-207ENST00000508583 CFDP1Q9UEE9 299 aaPredicted RBP14.23□□□□□ -0.13
NUP54-207ENST00000508583 RICTORQ6R327 1708 aa14.23□□□□□ -0.13
NUP54-207ENST00000508583 PLEKHH2Q8IVE3 1493 aa14.23□□□□□ -0.13
NUP54-207ENST00000508583 KANK4Q5T7N3 995 aaPredicted RBP14.2□□□□□ -0.14
NUP54-207ENST00000508583 SCAPERQ9BY12 1400 aa14.2□□□□□ -0.14
NUP54-207ENST00000508583 ZNF518AQ6AHZ1 1483 aa14.19□□□□□ -0.14
NUP54-207ENST00000508583 POGZQ7Z3K3 1410 aa14.19□□□□□ -0.14
NUP54-207ENST00000508583 RAPGEF3O95398 923 aa14.19□□□□□ -0.14
NUP54-207ENST00000508583 ABCC1P33527 1531 aa14.19□□□□□ -0.14
NUP54-207ENST00000508583 SAMD9LQ8IVG5 1584 aa14.17□□□□□ -0.14
NUP54-207ENST00000508583 KIAA1107Q9UPP5 1409 aa14.17□□□□□ -0.14
NUP54-207ENST00000508583 ZNF777Q9ULD5 760 aaPredicted RBP14.17□□□□□ -0.14
NUP54-207ENST00000508583 MAGI2Q86UL8 1455 aa14.17□□□□□ -0.14
NUP54-207ENST00000508583 MIA2Q96PC5 1412 aa14.16□□□□□ -0.14
NUP54-207ENST00000508583 ZMYM4Q5VZL5 1548 aa14.16□□□□□ -0.14
NUP54-207ENST00000508583 MYOM3Q5VTT5 1437 aa14.15□□□□□ -0.14
NUP54-207ENST00000508583 ARHGEF12Q9NZN5 1544 aa14.14□□□□□ -0.15
NUP54-207ENST00000508583 RSPH4AQ5TD94 716 aa14.13□□□□□ -0.15
NUP54-207ENST00000508583 ARHGEF40Q8TER5 1519 aa14.13□□□□□ -0.15
NUP54-207ENST00000508583 SYCP2Q9BX26 1530 aa14.13□□□□□ -0.15
NUP54-207ENST00000508583 KDM5CP41229 1560 aa14.13□□□□□ -0.15
NUP54-207ENST00000508583 ZFYVE16Q7Z3T8 1539 aa14.11□□□□□ -0.15
NUP54-207ENST00000508583 ADRA2BP18089 450 aa14.11□□□□□ -0.15
NUP54-207ENST00000508583 CAMSAP2Q08AD1 1489 aa14.11□□□□□ -0.15
NUP54-207ENST00000508583 HECW2Q9P2P5 1572 aa14.1□□□□□ -0.15
NUP54-207ENST00000508583 MYT1LQ9UL68 1186 aa14.1□□□□□ -0.15
NUP54-207ENST00000508583 YEATS2Q9ULM3 1422 aa14.09□□□□□ -0.15
NUP54-207ENST00000508583 TRAPPC8Q9Y2L5 1435 aa14.09□□□□□ -0.15
NUP54-207ENST00000508583 MLH3Q9UHC1 1453 aa14.09□□□□□ -0.15
NUP54-207ENST00000508583 FGD6Q6ZV73 1430 aa14.08□□□□□ -0.15
NUP54-207ENST00000508583 CCDC141Q6ZP82 1450 aa14.08□□□□□ -0.16
NUP54-207ENST00000508583 SIGLEC1Q9BZZ2 1709 aa14.08□□□□□ -0.16
NUP54-207ENST00000508583 HNRNPMP52272 730 aaKnown RBP eCLIP14.08□□□□□ -0.16
NUP54-207ENST00000508583 AFAP1Q8N556 730 aa14.08□□□□□ -0.16
NUP54-207ENST00000508583 ARHGEF5Q12774 1597 aa14.07□□□□□ -0.16
NUP54-207ENST00000508583 SPAG9O60271 1321 aaKnown RBP14.07□□□□□ -0.16
NUP54-207ENST00000508583 ZNF644Q9H582 1327 aaPredicted RBP14.07□□□□□ -0.16
NUP54-207ENST00000508583 ABCA6Q8N139 1617 aa14.06□□□□□ -0.16
NUP54-207ENST00000508583 PTPN23Q9H3S7 1636 aa14.06□□□□□ -0.16
NUP54-207ENST00000508583 MBD5Q9P267 1494 aa14.06□□□□□ -0.16
NUP54-207ENST00000508583 TSPY4P0CV99 314 aa14.05□□□□□ -0.16
NUP54-207ENST00000508583 TSPY10P0CW01 314 aa14.05□□□□□ -0.16
NUP54-207ENST00000508583 C9orf84Q5VXU9 1444 aa14.05□□□□□ -0.16
NUP54-207ENST00000508583 ATP10AO60312 1499 aa14.05□□□□□ -0.16
NUP54-207ENST00000508583 DIP2CQ9Y2E4 1556 aa14.05□□□□□ -0.16
NUP54-207ENST00000508583 KIDINS220Q9ULH0 1771 aa14.04□□□□□ -0.16
NUP54-207ENST00000508583 RTEL1-TNFRSF6BF6WH68 1400 aa14.04□□□□□ -0.16
NUP54-207ENST00000508583 TCOF1Q13428 1488 aaKnown RBP14.04□□□□□ -0.16
NUP54-207ENST00000508583 INO80Q9ULG1 1556 aaPredicted RBP14.04□□□□□ -0.16
NUP54-207ENST00000508583 ATP7AQ04656 1500 aa14.03□□□□□ -0.16
NUP54-207ENST00000508583 REREQ9P2R6 1566 aa14.02□□□□□ -0.16
NUP54-207ENST00000508583 ARID4BQ4LE39 1312 aaPredicted RBP14.01□□□□□ -0.17
NUP54-207ENST00000508583 KDM4FA0A1W2PPD8 638 aa14.01□□□□□ -0.17
NUP54-207ENST00000508583 BCORL1Q5H9F3 1711 aa14.01□□□□□ -0.17
NUP54-207ENST00000508583 SHANK2Q9UPX8 1470 aa13.99□□□□□ -0.17
NUP54-207ENST00000508583 ADGBQ8N7X0 1667 aa13.99□□□□□ -0.17
NUP54-207ENST00000508583 FAM50AQ14320 339 aaKnown RBP13.99□□□□□ -0.17
NUP54-207ENST00000508583 MAST1Q9Y2H9 1570 aa13.99□□□□□ -0.17
NUP54-207ENST00000508583 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.98□□□□□ -0.17
NUP54-207ENST00000508583 DNMT1P26358 1616 aaKnown RBP13.98□□□□□ -0.17
NUP54-207ENST00000508583 PPARGC1BQ86YN6 1023 aaKnown RBP13.98□□□□□ -0.17
NUP54-207ENST00000508583 ADAMTSL3P82987 1691 aa13.98□□□□□ -0.17
NUP54-207ENST00000508583 CROCC2H7BZ55 1655 aa13.97□□□□□ -0.17
NUP54-207ENST00000508583 DAPK1P53355 1430 aa13.97□□□□□ -0.17
NUP54-207ENST00000508583 MADDQ8WXG6 1647 aa13.97□□□□□ -0.17
NUP54-207ENST00000508583 AGLP35573 1532 aa13.96□□□□□ -0.17
NUP54-207ENST00000508583 A2MP01023 1474 aa13.96□□□□□ -0.17
NUP54-207ENST00000508583 ABCC5O15440 1437 aa13.95□□□□□ -0.18
NUP54-207ENST00000508583 PLXNC1O60486 1568 aa13.95□□□□□ -0.18
NUP54-207ENST00000508583 RRBP1Q9P2E9 1410 aaKnown RBP13.93□□□□□ -0.18
NUP54-207ENST00000508583 RIMS1Q86UR5 1692 aaKnown RBP13.93□□□□□ -0.18
NUP54-207ENST00000508583 FER1L4A9Z1Z3 1794 aa13.93□□□□□ -0.18
NUP54-207ENST00000508583 ANKRD30AQ9BXX3 1397 aa13.93□□□□□ -0.18
NUP54-207ENST00000508583 DHX29Q7Z478 1369 aaKnown RBP13.92□□□□□ -0.18
NUP54-207ENST00000508583 MLECQ14165 292 aa13.91□□□□□ -0.18
NUP54-207ENST00000508583 DUOX2Q9NRD8 1548 aa13.9□□□□□ -0.18
NUP54-207ENST00000508583 ESF1Q9H501 851 aaKnown RBP13.9□□□□□ -0.18
NUP54-207ENST00000508583 ADGRL2O95490 1459 aa13.89□□□□□ -0.19
NUP54-207ENST00000508583 KIF15Q9NS87 1388 aa13.89□□□□□ -0.19
NUP54-207ENST00000508583 EIF2AK4Q9P2K8 1649 aaKnown RBP13.88□□□□□ -0.19
NUP54-207ENST00000508583 ERBINQ96RT1 1412 aa13.88□□□□□ -0.19
NUP54-207ENST00000508583 CNTLNQ9NXG0 1405 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms