RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 NISCHQ9Y2I1 1504 aa21.87■■□□□ 1.09
NUP54-207ENST00000508583 AEBP2Q6ZN18 517 aaPredicted RBP19.84■□□□□ 0.77
NUP54-207ENST00000508583 CCDC180Q9P1Z9 1646 aa19.46■□□□□ 0.71
NUP54-207ENST00000508583 ABCC9O60706 1549 aa18.97■□□□□ 0.63
NUP54-207ENST00000508583 CHIC1Q5VXU3 224 aa18.31■□□□□ 0.52
NUP54-207ENST00000508583 NACADO15069 1562 aa18.27■□□□□ 0.52
NUP54-207ENST00000508583 RB1CC1Q8TDY2 1594 aa18.26■□□□□ 0.51
NUP54-207ENST00000508583 ZCCHC6Q5VYS8 1495 aaKnown RBP18.25■□□□□ 0.51
NUP54-207ENST00000508583 MYO15BQ96JP2 1530 aa18.22■□□□□ 0.51
NUP54-207ENST00000508583 DCAF8L2P0C7V8 631 aa18.21■□□□□ 0.51
NUP54-207ENST00000508583 DCAF1Q9Y4B6 1507 aa18.16■□□□□ 0.5
NUP54-207ENST00000508583 UNC13AQ9UPW8 1703 aa17.92■□□□□ 0.46
NUP54-207ENST00000508583 SCRIBQ14160 1630 aa17.77■□□□□ 0.44
NUP54-207ENST00000508583 BICRAQ9NZM4 1560 aa17.72■□□□□ 0.43
NUP54-207ENST00000508583 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
NUP54-207ENST00000508583 SHROOM4Q9ULL8 1493 aa17.6■□□□□ 0.41
NUP54-207ENST00000508583 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
NUP54-207ENST00000508583 EIF4G1Q04637 1599 aaKnown RBP17.24■□□□□ 0.35
NUP54-207ENST00000508583 CC2D2AQ9P2K1 1620 aa17.17■□□□□ 0.34
NUP54-207ENST00000508583 CECR2Q9BXF3 1484 aa17.02■□□□□ 0.32
NUP54-207ENST00000508583 BAZ1AQ9NRL2 1556 aaPredicted RBP16.99■□□□□ 0.31
NUP54-207ENST00000508583 SMARCA4P51532 1647 aa16.97■□□□□ 0.31
NUP54-207ENST00000508583 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
NUP54-207ENST00000508583 SMARCA2P51531 1590 aa16.88■□□□□ 0.29
NUP54-207ENST00000508583 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
NUP54-207ENST00000508583 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
NUP54-207ENST00000508583 NCAPD3P42695 1498 aa16.82■□□□□ 0.28
NUP54-207ENST00000508583 PEG3Q9GZU2 1588 aa16.81■□□□□ 0.28
NUP54-207ENST00000508583 HMGXB3Q12766 1538 aa16.78■□□□□ 0.28
NUP54-207ENST00000508583 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
NUP54-207ENST00000508583 WIZO95785 1651 aa16.72■□□□□ 0.27
NUP54-207ENST00000508583 RSF1Q96T23 1441 aaPredicted RBP16.69■□□□□ 0.26
NUP54-207ENST00000508583 PHF23Q9BUL5 403 aaPredicted RBP16.59■□□□□ 0.25
NUP54-207ENST00000508583 TOP2AP11388 1531 aaKnown RBP16.53■□□□□ 0.24
NUP54-207ENST00000508583 NESP48681 1621 aa16.44■□□□□ 0.22
NUP54-207ENST00000508583 LAMC3Q9Y6N6 1575 aa16.39■□□□□ 0.21
NUP54-207ENST00000508583 POTEDQ86YR6 584 aa16.35■□□□□ 0.21
NUP54-207ENST00000508583 CADPSQ9ULU8 1353 aa16.34■□□□□ 0.21
NUP54-207ENST00000508583 SUPT5HO00267 1087 aaKnown RBP16.33■□□□□ 0.2
NUP54-207ENST00000508583 ERCC6Q03468 1493 aa16.32■□□□□ 0.2
NUP54-207ENST00000508583 PDS5BQ9NTI5 1447 aa16.29■□□□□ 0.2
NUP54-207ENST00000508583 KIF21AQ7Z4S6 1674 aa16.29■□□□□ 0.2
NUP54-207ENST00000508583 CCDC88BA6NC98 1476 aa16.29■□□□□ 0.2
NUP54-207ENST00000508583 CFTRP13569 1480 aa16.26■□□□□ 0.19
NUP54-207ENST00000508583 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.18
NUP54-207ENST00000508583 PRDM2Q13029 1718 aa16.2■□□□□ 0.18
NUP54-207ENST00000508583 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
NUP54-207ENST00000508583 CEP164Q9UPV0 1460 aa16.15■□□□□ 0.18
NUP54-207ENST00000508583 CUX2O14529 1486 aa16.11■□□□□ 0.17
NUP54-207ENST00000508583 MRC2Q9UBG0 1479 aa16.1■□□□□ 0.17
NUP54-207ENST00000508583 WDR62O43379 1518 aa16.06■□□□□ 0.16
NUP54-207ENST00000508583 URB2Q14146 1524 aaKnown RBP16■□□□□ 0.15
NUP54-207ENST00000508583 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
NUP54-207ENST00000508583 FOXD1Q16676 465 aa15.94■□□□□ 0.14
NUP54-207ENST00000508583 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
NUP54-207ENST00000508583 TOPBP1Q92547 1522 aa15.9■□□□□ 0.14
NUP54-207ENST00000508583 CUX1P39880 1505 aa15.81■□□□□ 0.12
NUP54-207ENST00000508583 IFT140Q96RY7 1462 aa15.8■□□□□ 0.12
NUP54-207ENST00000508583 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.12
NUP54-207ENST00000508583 POLA1P09884 1462 aaPredicted RBP15.77■□□□□ 0.11
NUP54-207ENST00000508583 TARBP1Q13395 1621 aaKnown RBP15.76■□□□□ 0.11
NUP54-207ENST00000508583 FGD5Q6ZNL6 1462 aa15.75■□□□□ 0.11
NUP54-207ENST00000508583 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
NUP54-207ENST00000508583 TOP2BQ02880 1626 aa15.72■□□□□ 0.11
NUP54-207ENST00000508583 SYNJ1O43426 1573 aa15.72■□□□□ 0.11
NUP54-207ENST00000508583 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
NUP54-207ENST00000508583 EIF4G3O43432 1585 aaKnown RBP15.71■□□□□ 0.11
NUP54-207ENST00000508583 RAD54L2Q9Y4B4 1467 aa15.71■□□□□ 0.1
NUP54-207ENST00000508583 SOGA1O94964 1423 aa15.7■□□□□ 0.1
NUP54-207ENST00000508583 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
NUP54-207ENST00000508583 AQRO60306 1485 aaKnown RBP eCLIP15.62■□□□□ 0.09
NUP54-207ENST00000508583 ABCA10Q8WWZ4 1543 aa15.62■□□□□ 0.09
NUP54-207ENST00000508583 TDRD9Q8NDG6 1382 aaKnown RBP15.59■□□□□ 0.09
NUP54-207ENST00000508583 ABCA5Q8WWZ7 1642 aa15.56■□□□□ 0.08
NUP54-207ENST00000508583 PBRM1Q86U86 1689 aa15.56■□□□□ 0.08
NUP54-207ENST00000508583 GRIN2BQ13224 1484 aa15.54■□□□□ 0.08
NUP54-207ENST00000508583 GAPVD1Q14C86 1478 aa15.54■□□□□ 0.08
NUP54-207ENST00000508583 DNAJC5Q9H3Z4 198 aa15.52■□□□□ 0.08
NUP54-207ENST00000508583 CHD1O14646 1710 aa15.51■□□□□ 0.07
NUP54-207ENST00000508583 MAGI1Q96QZ7 1491 aaPredicted RBP15.51■□□□□ 0.07
NUP54-207ENST00000508583 SNAPC4Q5SXM2 1469 aa15.5■□□□□ 0.07
NUP54-207ENST00000508583 TRIM41Q8WV44 630 aa15.48■□□□□ 0.07
NUP54-207ENST00000508583 KIF27Q86VH2 1401 aa15.47■□□□□ 0.07
NUP54-207ENST00000508583 ERICH3Q5RHP9 1530 aa15.46■□□□□ 0.07
NUP54-207ENST00000508583 OSCARQ8IYS5 282 aa15.43■□□□□ 0.06
NUP54-207ENST00000508583 SYNJ2O15056 1496 aa15.42■□□□□ 0.06
NUP54-207ENST00000508583 ADAMTS12P58397 1594 aa15.41■□□□□ 0.06
NUP54-207ENST00000508583 CHMP7Q8WUX9 453 aaPredicted RBP15.41■□□□□ 0.06
NUP54-207ENST00000508583 FBLN2P98095 1184 aa15.4■□□□□ 0.06
NUP54-207ENST00000508583 FHAD1B1AJZ9 1412 aa15.38■□□□□ 0.05
NUP54-207ENST00000508583 CUL7Q14999 1698 aa15.35■□□□□ 0.05
NUP54-207ENST00000508583 IGF1RP08069 1367 aa15.32■□□□□ 0.04
NUP54-207ENST00000508583 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
NUP54-207ENST00000508583 CLASP1Q7Z460 1538 aa15.31■□□□□ 0.04
NUP54-207ENST00000508583 EEA1Q15075 1411 aa15.28■□□□□ 0.04
NUP54-207ENST00000508583 CEP170Q5SW79 1584 aa15.28■□□□□ 0.04
NUP54-207ENST00000508583 RUSC2Q8N2Y8 1516 aa15.27■□□□□ 0.04
NUP54-207ENST00000508583 CARMIL1Q5VZK9 1371 aa15.26■□□□□ 0.03
NUP54-207ENST00000508583 RIMBP3CA6NJZ7 1639 aa15.26■□□□□ 0.03
NUP54-207ENST00000508583 RIMBP3BA6NNM3 1639 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms