RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 CDC42BPAQ5VT25 1732 aa23.56■■□□□ 1.36
RNF4-210ENST00000508235 CDC42BPBQ9Y5S2 1711 aa23.56■■□□□ 1.36
RNF4-210ENST00000508235 LRRC9Q6ZRR7 1453 aa23.55■■□□□ 1.36
RNF4-210ENST00000508235 CCNB3Q8WWL7 1395 aa23.52■■□□□ 1.36
RNF4-210ENST00000508235 ITSN2Q9NZM3 1697 aa23.51■■□□□ 1.35
RNF4-210ENST00000508235 DENND4BO75064 1496 aaPredicted RBP23.49■■□□□ 1.35
RNF4-210ENST00000508235 ADGRL1O94910 1474 aa23.49■■□□□ 1.35
RNF4-210ENST00000508235 GPATCH8Q9UKJ3 1502 aaKnown RBP23.49■■□□□ 1.35
RNF4-210ENST00000508235 NCOA2Q15596 1464 aa23.48■■□□□ 1.35
RNF4-210ENST00000508235 SCAPERQ9BY12 1400 aa23.45■■□□□ 1.34
RNF4-210ENST00000508235 KANK4Q5T7N3 995 aaPredicted RBP23.45■■□□□ 1.34
RNF4-210ENST00000508235 CFDP1Q9UEE9 299 aaPredicted RBP23.45■■□□□ 1.34
RNF4-210ENST00000508235 RICTORQ6R327 1708 aa23.45■■□□□ 1.34
RNF4-210ENST00000508235 RAPGEF3O95398 923 aa23.43■■□□□ 1.34
RNF4-210ENST00000508235 FRMPD1Q5SYB0 1578 aa23.43■■□□□ 1.34
RNF4-210ENST00000508235 ABCC1P33527 1531 aa23.4■■□□□ 1.34
RNF4-210ENST00000508235 PLEKHH2Q8IVE3 1493 aa23.4■■□□□ 1.34
RNF4-210ENST00000508235 POGZQ7Z3K3 1410 aa23.4■■□□□ 1.34
RNF4-210ENST00000508235 ZNF777Q9ULD5 760 aaPredicted RBP23.39■■□□□ 1.33
RNF4-210ENST00000508235 SAMD9LQ8IVG5 1584 aa23.39■■□□□ 1.33
RNF4-210ENST00000508235 ZNF518AQ6AHZ1 1483 aa23.38■■□□□ 1.33
RNF4-210ENST00000508235 ZMYM4Q5VZL5 1548 aa23.38■■□□□ 1.33
RNF4-210ENST00000508235 KIAA1107Q9UPP5 1409 aa23.35■■□□□ 1.33
RNF4-210ENST00000508235 MAGI2Q86UL8 1455 aa23.35■■□□□ 1.33
RNF4-210ENST00000508235 KDM5CP41229 1560 aa23.32■■□□□ 1.32
RNF4-210ENST00000508235 SYCP2Q9BX26 1530 aa23.32■■□□□ 1.32
RNF4-210ENST00000508235 MYOM3Q5VTT5 1437 aa23.32■■□□□ 1.32
RNF4-210ENST00000508235 ARHGEF12Q9NZN5 1544 aa23.31■■□□□ 1.32
RNF4-210ENST00000508235 MIA2Q96PC5 1412 aa23.3■■□□□ 1.32
RNF4-210ENST00000508235 ZFYVE16Q7Z3T8 1539 aa23.29■■□□□ 1.32
RNF4-210ENST00000508235 AFAP1Q8N556 730 aa23.29■■□□□ 1.32
RNF4-210ENST00000508235 ARHGEF40Q8TER5 1519 aa23.28■■□□□ 1.32
RNF4-210ENST00000508235 TRAPPC8Q9Y2L5 1435 aa23.28■■□□□ 1.32
RNF4-210ENST00000508235 HECW2Q9P2P5 1572 aa23.27■■□□□ 1.32
RNF4-210ENST00000508235 CAMSAP2Q08AD1 1489 aa23.27■■□□□ 1.32
RNF4-210ENST00000508235 HNRNPMP52272 730 aaKnown RBP eCLIP23.26■■□□□ 1.312e-7■■■■■ 37.5
RNF4-210ENST00000508235 ZNF644Q9H582 1327 aaPredicted RBP23.25■■□□□ 1.31
RNF4-210ENST00000508235 MLH3Q9UHC1 1453 aa23.24■■□□□ 1.31
RNF4-210ENST00000508235 RSPH4AQ5TD94 716 aa23.24■■□□□ 1.31
RNF4-210ENST00000508235 MYT1LQ9UL68 1186 aa23.24■■□□□ 1.31
RNF4-210ENST00000508235 YEATS2Q9ULM3 1422 aa23.21■■□□□ 1.31
RNF4-210ENST00000508235 MBD5Q9P267 1494 aa23.21■■□□□ 1.31
RNF4-210ENST00000508235 ARHGEF5Q12774 1597 aa23.19■■□□□ 1.3
RNF4-210ENST00000508235 ATP10AO60312 1499 aa23.19■■□□□ 1.3
RNF4-210ENST00000508235 SPAG9O60271 1321 aaKnown RBP23.19■■□□□ 1.3
RNF4-210ENST00000508235 PTPN23Q9H3S7 1636 aa23.19■■□□□ 1.3
RNF4-210ENST00000508235 CCDC141Q6ZP82 1450 aa23.18■■□□□ 1.3
RNF4-210ENST00000508235 FGD6Q6ZV73 1430 aa23.18■■□□□ 1.3
RNF4-210ENST00000508235 KIDINS220Q9ULH0 1771 aa23.18■■□□□ 1.3
RNF4-210ENST00000508235 C9orf84Q5VXU9 1444 aa23.16■■□□□ 1.3
RNF4-210ENST00000508235 ATP7AQ04656 1500 aa23.16■■□□□ 1.3
RNF4-210ENST00000508235 INO80Q9ULG1 1556 aaPredicted RBP23.15■■□□□ 1.3
RNF4-210ENST00000508235 DIP2CQ9Y2E4 1556 aa23.15■■□□□ 1.3
RNF4-210ENST00000508235 ABCA6Q8N139 1617 aa23.15■■□□□ 1.3
RNF4-210ENST00000508235 TCOF1Q13428 1488 aaKnown RBP23.14■■□□□ 1.29
RNF4-210ENST00000508235 ARID4BQ4LE39 1312 aaPredicted RBP23.13■■□□□ 1.29
RNF4-210ENST00000508235 RTEL1-TNFRSF6BF6WH68 1400 aa23.13■■□□□ 1.29
RNF4-210ENST00000508235 REREQ9P2R6 1566 aa23.13■■□□□ 1.29
RNF4-210ENST00000508235 TSPY4P0CV99 314 aa23.12■■□□□ 1.29
RNF4-210ENST00000508235 TSPY10P0CW01 314 aa23.12■■□□□ 1.29
RNF4-210ENST00000508235 PPARGC1BQ86YN6 1023 aaKnown RBP23.09■■□□□ 1.29
RNF4-210ENST00000508235 ADGBQ8N7X0 1667 aa23.08■■□□□ 1.29
RNF4-210ENST00000508235 BCORL1Q5H9F3 1711 aa23.08■■□□□ 1.28
RNF4-210ENST00000508235 MAST1Q9Y2H9 1570 aa23.07■■□□□ 1.28
RNF4-210ENST00000508235 KDM4FA0A1W2PPD8 638 aa23.06■■□□□ 1.28
RNF4-210ENST00000508235 DNMT1P26358 1616 aaKnown RBP23.06■■□□□ 1.28
RNF4-210ENST00000508235 CROCC2H7BZ55 1655 aa23.06■■□□□ 1.28
RNF4-210ENST00000508235 SIGLEC1Q9BZZ2 1709 aa23.05■■□□□ 1.28
RNF4-210ENST00000508235 AGLP35573 1532 aa23.04■■□□□ 1.28
RNF4-210ENST00000508235 FAM50AQ14320 339 aaKnown RBP23.03■■□□□ 1.28
RNF4-210ENST00000508235 A2MP01023 1474 aa23.03■■□□□ 1.28
RNF4-210ENST00000508235 SHANK2Q9UPX8 1470 aa23.03■■□□□ 1.28
RNF4-210ENST00000508235 ADAMTSL3P82987 1691 aa23.03■■□□□ 1.28
RNF4-210ENST00000508235 DAPK1P53355 1430 aa23.01■■□□□ 1.27
RNF4-210ENST00000508235 ABCC5O15440 1437 aa23■■□□□ 1.27
RNF4-210ENST00000508235 AEBP2Q6ZN18 517 aaPredicted RBP23■■□□□ 1.27
RNF4-210ENST00000508235 PLXNC1O60486 1568 aa23■■□□□ 1.27
RNF4-210ENST00000508235 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.98■■□□□ 1.27
RNF4-210ENST00000508235 DHX29Q7Z478 1369 aaKnown RBP22.96■■□□□ 1.27
RNF4-210ENST00000508235 MLECQ14165 292 aa22.95■■□□□ 1.26
RNF4-210ENST00000508235 FER1L4A9Z1Z3 1794 aa22.94■■□□□ 1.26
RNF4-210ENST00000508235 MADDQ8WXG6 1647 aa22.94■■□□□ 1.26
RNF4-210ENST00000508235 RRBP1Q9P2E9 1410 aaKnown RBP22.93■■□□□ 1.26
RNF4-210ENST00000508235 ANKRD30AQ9BXX3 1397 aa22.91■■□□□ 1.26
RNF4-210ENST00000508235 RIMS1Q86UR5 1692 aaKnown RBP22.9■■□□□ 1.26
RNF4-210ENST00000508235 DUOX2Q9NRD8 1548 aa22.9■■□□□ 1.26
RNF4-210ENST00000508235 ESF1Q9H501 851 aaKnown RBP22.88■■□□□ 1.25
RNF4-210ENST00000508235 EIF2AK4Q9P2K8 1649 aaKnown RBP22.88■■□□□ 1.25
RNF4-210ENST00000508235 KIF15Q9NS87 1388 aa22.88■■□□□ 1.25
RNF4-210ENST00000508235 ADGRL2O95490 1459 aa22.87■■□□□ 1.25
RNF4-210ENST00000508235 PTPRMP28827 1452 aa22.87■■□□□ 1.25
RNF4-210ENST00000508235 CHIC2Q9UKJ5 165 aa22.86■■□□□ 1.25
RNF4-210ENST00000508235 PPP6R1Q9UPN7 881 aa22.86■■□□□ 1.25
RNF4-210ENST00000508235 NCOA1Q15788 1441 aa22.85■■□□□ 1.25
RNF4-210ENST00000508235 KIF3BO15066 747 aa22.85■■□□□ 1.25
RNF4-210ENST00000508235 RRP7BPQ9NSQ0 103 aa22.85■■□□□ 1.25
RNF4-210ENST00000508235 CNTLNQ9NXG0 1405 aa22.84■■□□□ 1.25
RNF4-210ENST00000508235 ERBINQ96RT1 1412 aa22.83■■□□□ 1.25
RNF4-210ENST00000508235 GGT6Q6P531 493 aa22.83■■□□□ 1.25
RNF4-210ENST00000508235 ROCK1Q13464 1354 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms