RNA–Protein interactions for RNA: ENST00000504719.6

PVT1-201, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 754 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-201ENST00000504719 ARHGAP5Q13017 1502 aa40.77■■■■■ 4.12
PVT1-201ENST00000504719 CDC42BPBQ9Y5S2 1711 aa40.77■■■■■ 4.12
PVT1-201ENST00000504719 POGZQ7Z3K3 1410 aa40.76■■■■■ 4.11
PVT1-201ENST00000504719 PREX2Q70Z35 1606 aa40.71■■■■■ 4.11
PVT1-201ENST00000504719 LOC105371045A0A1W2PR82 267 aa40.71■■■■■ 4.11
PVT1-201ENST00000504719 MAGI2Q86UL8 1455 aa40.7■■■■■ 4.11
PVT1-201ENST00000504719 ZFYVE16Q7Z3T8 1539 aa40.68■■■■■ 4.1
PVT1-201ENST00000504719 ADAMTSL3P82987 1691 aa40.66■■■■■ 4.1
PVT1-201ENST00000504719 CDC42BPAQ5VT25 1732 aa40.66■■■■■ 4.1
PVT1-201ENST00000504719 YEATS2Q9ULM3 1422 aa40.65■■■■■ 4.1
PVT1-201ENST00000504719 BCORL1Q5H9F3 1711 aa40.64■■■■■ 4.1
PVT1-201ENST00000504719 ARID4BQ4LE39 1312 aaPredicted RBP40.63■■■■■ 4.09
PVT1-201ENST00000504719 ZNF518AQ6AHZ1 1483 aa40.58■■■■■ 4.09
PVT1-201ENST00000504719 KDM5CP41229 1560 aa40.55■■■■■ 4.08
PVT1-201ENST00000504719 MTUS2Q5JR59 1369 aa40.54■■■■■ 4.08
PVT1-201ENST00000504719 SIGLEC1Q9BZZ2 1709 aa40.53■■■■■ 4.08
PVT1-201ENST00000504719 ABCC1P33527 1531 aa40.53■■■■■ 4.08
PVT1-201ENST00000504719 AFAP1Q8N556 730 aa40.53■■■■■ 4.08
PVT1-201ENST00000504719 GPATCH8Q9UKJ3 1502 aaKnown RBP40.52■■■■■ 4.08
PVT1-201ENST00000504719 ITSN2Q9NZM3 1697 aa40.5■■■■■ 4.07
PVT1-201ENST00000504719 ARHGEF12Q9NZN5 1544 aa40.5■■■■■ 4.07
PVT1-201ENST00000504719 ATP10AO60312 1499 aa40.48■■■■■ 4.07
PVT1-201ENST00000504719 MADDQ8WXG6 1647 aa40.48■■■■■ 4.07
PVT1-201ENST00000504719 PTPRMP28827 1452 aa40.46■■■■■ 4.07
PVT1-201ENST00000504719 EHBP1L1Q8N3D4 1523 aa40.46■■■■■ 4.07
PVT1-201ENST00000504719 TRAPPC8Q9Y2L5 1435 aa40.45■■■■■ 4.07
PVT1-201ENST00000504719 HECW2Q9P2P5 1572 aa40.44■■■■■ 4.06
PVT1-201ENST00000504719 C9orf84Q5VXU9 1444 aa40.42■■■■■ 4.06
PVT1-201ENST00000504719 CCNB3Q8WWL7 1395 aa40.42■■■■■ 4.06
PVT1-201ENST00000504719 SAMD9LQ8IVG5 1584 aa40.42■■■■■ 4.06
PVT1-201ENST00000504719 ZNF777Q9ULD5 760 aaPredicted RBP40.4■■■■■ 4.06
PVT1-201ENST00000504719 VPS8Q8N3P4 1428 aa40.4■■■■■ 4.06
PVT1-201ENST00000504719 MLH3Q9UHC1 1453 aa40.39■■■■■ 4.06
PVT1-201ENST00000504719 RIMS1Q86UR5 1692 aaKnown RBP40.37■■■■■ 4.05
PVT1-201ENST00000504719 CFDP1Q9UEE9 299 aaPredicted RBP40.36■■■■■ 4.05
PVT1-201ENST00000504719 MYT1LQ9UL68 1186 aa40.36■■■■■ 4.05
PVT1-201ENST00000504719 DIP2CQ9Y2E4 1556 aa40.35■■■■■ 4.05
PVT1-201ENST00000504719 TIAM1Q13009 1591 aa40.34■■■■■ 4.05
PVT1-201ENST00000504719 SYCP2Q9BX26 1530 aa40.32■■■■■ 4.04
PVT1-201ENST00000504719 ABCA6Q8N139 1617 aa40.31■■■■■ 4.04
PVT1-201ENST00000504719 MLECQ14165 292 aa40.3■■■■■ 4.04
PVT1-201ENST00000504719 KIDINS220Q9ULH0 1771 aa40.29■■■■■ 4.04
PVT1-201ENST00000504719 PLEKHH2Q8IVE3 1493 aa40.28■■■■■ 4.04
PVT1-201ENST00000504719 KIAA1107Q9UPP5 1409 aa40.28■■■■■ 4.04
PVT1-201ENST00000504719 REREQ9P2R6 1566 aa40.27■■■■■ 4.04
PVT1-201ENST00000504719 HNRNPMP52272 730 aaKnown RBP eCLIP40.27■■■■■ 4.046e-7■■■□□ 16.1
PVT1-201ENST00000504719 FER1L4A9Z1Z3 1794 aa40.26■■■■■ 4.04
PVT1-201ENST00000504719 SUPT6HQ7KZ85 1726 aaKnown RBP40.26■■■■■ 4.04
PVT1-201ENST00000504719 NCOA2Q15596 1464 aa40.2■■■■■ 4.03
PVT1-201ENST00000504719 SPAG9O60271 1321 aaKnown RBP40.16■■■■■ 4.02
PVT1-201ENST00000504719 LRRC9Q6ZRR7 1453 aa40.15■■■■■ 4.02
PVT1-201ENST00000504719 ZNF644Q9H582 1327 aaPredicted RBP40.15■■■■■ 4.02
PVT1-201ENST00000504719 AGLP35573 1532 aa40.14■■■■■ 4.02
PVT1-201ENST00000504719 MAP3K1Q13233 1512 aa40.14■■■■■ 4.02
PVT1-201ENST00000504719 ATP7AQ04656 1500 aa40.09■■■■■ 4.01
PVT1-201ENST00000504719 INO80Q9ULG1 1556 aaPredicted RBP40.09■■■■■ 4.01
PVT1-201ENST00000504719 MBD5Q9P267 1494 aa40.08■■■■■ 4.01
PVT1-201ENST00000504719 PLPPR3Q6T4P5 718 aa40.07■■■■■ 4.01
PVT1-201ENST00000504719 KANK4Q5T7N3 995 aaPredicted RBP40.04■■■■■ 4
PVT1-201ENST00000504719 LMTK3Q96Q04 1460 aa40■■■■□ 3.99
PVT1-201ENST00000504719 CAMSAP2Q08AD1 1489 aa39.99■■■■□ 3.99
PVT1-201ENST00000504719 A2MP01023 1474 aa39.94■■■■□ 3.98
PVT1-201ENST00000504719 PLXNC1O60486 1568 aa39.93■■■■□ 3.98
PVT1-201ENST00000504719 RTEL1-TNFRSF6BF6WH68 1400 aa39.92■■■■□ 3.98
PVT1-201ENST00000504719 CEBPAP49715 358 aaPredicted RBP39.92■■■■□ 3.98
PVT1-201ENST00000504719 ADGBQ8N7X0 1667 aa39.92■■■■□ 3.98
PVT1-201ENST00000504719 CCDC141Q6ZP82 1450 aa39.9■■■■□ 3.98
PVT1-201ENST00000504719 RSPH4AQ5TD94 716 aa39.9■■■■□ 3.98
PVT1-201ENST00000504719 APLP2Q06481 763 aa39.87■■■■□ 3.97
PVT1-201ENST00000504719 ESF1Q9H501 851 aaKnown RBP39.87■■■■□ 3.97
PVT1-201ENST00000504719 C3P01024 1663 aa39.86■■■■□ 3.97
PVT1-201ENST00000504719 ARHGEF5Q12774 1597 aa39.85■■■■□ 3.97
PVT1-201ENST00000504719 CNTLNQ9NXG0 1405 aa39.82■■■■□ 3.97
PVT1-201ENST00000504719 SETD1BQ9UPS6 1966 aaKnown RBP39.82■■■■□ 3.96
PVT1-201ENST00000504719 PREX1Q8TCU6 1659 aa39.82■■■■□ 3.96
PVT1-201ENST00000504719 MYOM3Q5VTT5 1437 aa39.82■■■■□ 3.96
PVT1-201ENST00000504719 MIA2Q96PC5 1412 aa39.8■■■■□ 3.96
PVT1-201ENST00000504719 HSPA2P54652 639 aa39.77■■■■□ 3.96
PVT1-201ENST00000504719 DHX29Q7Z478 1369 aaKnown RBP39.75■■■■□ 3.95
PVT1-201ENST00000504719 MROH2AA6NES4 1674 aa39.75■■■■□ 3.95
PVT1-201ENST00000504719 TSPY4P0CV99 314 aa39.72■■■■□ 3.95
PVT1-201ENST00000504719 TSPY10P0CW01 314 aa39.72■■■■□ 3.95
PVT1-201ENST00000504719 GGT6Q6P531 493 aa39.7■■■■□ 3.95
PVT1-201ENST00000504719 CLTCQ00610 1675 aaKnown RBP39.69■■■■□ 3.94
PVT1-201ENST00000504719 ZMYM3Q14202 1370 aa39.66■■■■□ 3.94
PVT1-201ENST00000504719 MAST1Q9Y2H9 1570 aa39.66■■■■□ 3.94
PVT1-201ENST00000504719 UHRF1BP1Q6BDS2 1440 aa39.65■■■■□ 3.94
PVT1-201ENST00000504719 PPP6R1Q9UPN7 881 aa39.65■■■■□ 3.94
PVT1-201ENST00000504719 PTPN23Q9H3S7 1636 aa39.59■■■■□ 3.93
PVT1-201ENST00000504719 KIF3BO15066 747 aa39.58■■■■□ 3.93
PVT1-201ENST00000504719 NPATQ14207 1427 aa39.57■■■■□ 3.93
PVT1-201ENST00000504719 FGD6Q6ZV73 1430 aa39.53■■■■□ 3.92
PVT1-201ENST00000504719 TCOF1Q13428 1488 aaKnown RBP39.49■■■■□ 3.91
PVT1-201ENST00000504719 PTPRKQ15262 1439 aa39.48■■■■□ 3.91
PVT1-201ENST00000504719 CROCC2H7BZ55 1655 aa39.48■■■■□ 3.91
PVT1-201ENST00000504719 ABCC5O15440 1437 aa39.47■■■■□ 3.91
PVT1-201ENST00000504719 STRCQ7RTU9 1775 aa39.46■■■■□ 3.91
PVT1-201ENST00000504719 FAM135AQ9P2D6 1515 aa39.46■■■■□ 3.91
PVT1-201ENST00000504719 SHANK2Q9UPX8 1470 aa39.43■■■■□ 3.9
PVT1-201ENST00000504719 KDM5DQ9BY66 1539 aa39.43■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms