RNA–Protein interactions for RNA: ENST00000504719.6

PVT1-201, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 754 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-201ENST00000504719 NISCHQ9Y2I1 1504 aa62.56■■■■■ 7.61
PVT1-201ENST00000504719 CCDC180Q9P1Z9 1646 aa55.88■■■■■ 6.54
PVT1-201ENST00000504719 ABCC9O60706 1549 aa55.17■■■■■ 6.42
PVT1-201ENST00000504719 RB1CC1Q8TDY2 1594 aa52.85■■■■■ 6.05
PVT1-201ENST00000504719 NACADO15069 1562 aa52.65■■■■■ 6.02
PVT1-201ENST00000504719 DCAF8L2P0C7V8 631 aa52.46■■■■■ 5.99
PVT1-201ENST00000504719 MYO15BQ96JP2 1530 aa52.16■■■■■ 5.94
PVT1-201ENST00000504719 ZCCHC6Q5VYS8 1495 aaKnown RBP51.99■■■■■ 5.91
PVT1-201ENST00000504719 DCAF1Q9Y4B6 1507 aa51.74■■■■■ 5.87
PVT1-201ENST00000504719 UNC13AQ9UPW8 1703 aa51.72■■■■■ 5.87
PVT1-201ENST00000504719 PABPN1Q86U42 306 aaKnown RBP eCLIP51.47■■■■■ 5.83
PVT1-201ENST00000504719 BICRAQ9NZM4 1560 aa51.29■■■■■ 5.8
PVT1-201ENST00000504719 DNAJC5BQ9UF47 199 aa51.18■■■■■ 5.78
PVT1-201ENST00000504719 SCRIBQ14160 1630 aa50.92■■■■■ 5.74
PVT1-201ENST00000504719 SHROOM4Q9ULL8 1493 aa50.66■■■■■ 5.7
PVT1-201ENST00000504719 EIF4G1Q04637 1599 aaKnown RBP49.96■■■■■ 5.59
PVT1-201ENST00000504719 CC2D2AQ9P2K1 1620 aa49.91■■■■■ 5.58
PVT1-201ENST00000504719 CECR2Q9BXF3 1484 aa49.63■■■■■ 5.54
PVT1-201ENST00000504719 SMARCA4P51532 1647 aa48.67■■■■■ 5.38
PVT1-201ENST00000504719 NCAPD3P42695 1498 aa48.59■■■■■ 5.37
PVT1-201ENST00000504719 ATAD2BQ9ULI0 1458 aa48.54■■■■■ 5.36
PVT1-201ENST00000504719 BAZ1AQ9NRL2 1556 aaPredicted RBP48.51■■■■■ 5.36
PVT1-201ENST00000504719 SMARCA2P51531 1590 aa48.44■■■■■ 5.35
PVT1-201ENST00000504719 HMGXB3Q12766 1538 aa48.3■■■■■ 5.32
PVT1-201ENST00000504719 MROH2BQ7Z745 1585 aa48.21■■■■■ 5.31
PVT1-201ENST00000504719 PEG3Q9GZU2 1588 aa48.21■■■■■ 5.31
PVT1-201ENST00000504719 BAZ1BQ9UIG0 1483 aaKnown RBP48.09■■■■■ 5.29
PVT1-201ENST00000504719 WIZO95785 1651 aa47.69■■■■■ 5.22
PVT1-201ENST00000504719 NESP48681 1621 aa47.6■■■■■ 5.21
PVT1-201ENST00000504719 ERCC6Q03468 1493 aa47.58■■■■■ 5.21
PVT1-201ENST00000504719 RSF1Q96T23 1441 aaPredicted RBP47.45■■■■■ 5.19
PVT1-201ENST00000504719 LAMC3Q9Y6N6 1575 aa47.4■■■■■ 5.18
PVT1-201ENST00000504719 CUX2O14529 1486 aa47.31■■■■■ 5.16
PVT1-201ENST00000504719 CADPSQ9ULU8 1353 aa47.14■■■■■ 5.14
PVT1-201ENST00000504719 TOP2AP11388 1531 aaKnown RBP47.11■■■■■ 5.13
PVT1-201ENST00000504719 PDS5BQ9NTI5 1447 aa47.08■■■■■ 5.13
PVT1-201ENST00000504719 KIF21AQ7Z4S6 1674 aa47.05■■■■■ 5.12
PVT1-201ENST00000504719 THOC2Q8NI27 1593 aaKnown RBP47.01■■■■■ 5.12
PVT1-201ENST00000504719 CFTRP13569 1480 aa46.75■■■■■ 5.07
PVT1-201ENST00000504719 MRC2Q9UBG0 1479 aa46.63■■■■■ 5.06
PVT1-201ENST00000504719 FANCD2Q9BXW9 1451 aa46.59■■■■■ 5.05
PVT1-201ENST00000504719 CCDC88BA6NC98 1476 aa46.57■■■■■ 5.05
PVT1-201ENST00000504719 CEP164Q9UPV0 1460 aa46.57■■■■■ 5.05
PVT1-201ENST00000504719 WDR62O43379 1518 aa46.52■■■■■ 5.04
PVT1-201ENST00000504719 DNAJC5Q9H3Z4 198 aa46.51■■■■■ 5.04
PVT1-201ENST00000504719 PRDM2Q13029 1718 aa46.41■■■■■ 5.02
PVT1-201ENST00000504719 URB2Q14146 1524 aaKnown RBP46.18■■■■■ 4.98
PVT1-201ENST00000504719 SUPT5HO00267 1087 aaKnown RBP45.81■■■■■ 4.92
PVT1-201ENST00000504719 TOPBP1Q92547 1522 aa45.8■■■■■ 4.92
PVT1-201ENST00000504719 ABCC8Q09428 1581 aa45.75■■■■■ 4.92
PVT1-201ENST00000504719 DNMBPQ6XZF7 1577 aa45.7■■■■■ 4.91
PVT1-201ENST00000504719 IFT140Q96RY7 1462 aa45.64■■■■■ 4.9
PVT1-201ENST00000504719 ZNF608Q9ULD9 1512 aaPredicted RBP45.49■■■■■ 4.87
PVT1-201ENST00000504719 POLA1P09884 1462 aaPredicted RBP45.37■■■■■ 4.85
PVT1-201ENST00000504719 TARBP1Q13395 1621 aaKnown RBP45.36■■■■■ 4.85
PVT1-201ENST00000504719 EIF4G3O43432 1585 aaKnown RBP45.28■■■■■ 4.84
PVT1-201ENST00000504719 CUX1P39880 1505 aa45.26■■■■■ 4.84
PVT1-201ENST00000504719 OSCARQ8IYS5 282 aa45.25■■■■■ 4.83
PVT1-201ENST00000504719 RAD54L2Q9Y4B4 1467 aa45.19■■■■■ 4.82
PVT1-201ENST00000504719 FGD5Q6ZNL6 1462 aa45.18■■■■■ 4.82
PVT1-201ENST00000504719 SOGA1O94964 1423 aa45.17■■■■■ 4.82
PVT1-201ENST00000504719 AQRO60306 1485 aaKnown RBP eCLIP45.17■■■■■ 4.82
PVT1-201ENST00000504719 TDRD9Q8NDG6 1382 aaKnown RBP44.98■■■■■ 4.79
PVT1-201ENST00000504719 WDR97A6NE52 1622 aa44.96■■■■■ 4.79
PVT1-201ENST00000504719 CHD1O14646 1710 aa44.86■■■■■ 4.77
PVT1-201ENST00000504719 BIVM-ERCC5R4GMW8 1640 aa44.74■■■■■ 4.75
PVT1-201ENST00000504719 WRNQ14191 1432 aaPredicted RBP eCLIP44.74■■■■■ 4.75
PVT1-201ENST00000504719 SNAPC4Q5SXM2 1469 aa44.72■■■■■ 4.75
PVT1-201ENST00000504719 TOP2BQ02880 1626 aa44.72■■■■■ 4.75
PVT1-201ENST00000504719 ABCA10Q8WWZ4 1543 aa44.72■■■■■ 4.75
PVT1-201ENST00000504719 TRIM41Q8WV44 630 aa44.71■■■■■ 4.75
PVT1-201ENST00000504719 GRIN2BQ13224 1484 aa44.71■■■■■ 4.75
PVT1-201ENST00000504719 FBLN2P98095 1184 aa44.7■■■■■ 4.75
PVT1-201ENST00000504719 SYNJ1O43426 1573 aa44.69■■■■■ 4.74
PVT1-201ENST00000504719 MAGI1Q96QZ7 1491 aaPredicted RBP44.65■■■■■ 4.74
PVT1-201ENST00000504719 GAPVD1Q14C86 1478 aa44.64■■■■■ 4.74
PVT1-201ENST00000504719 PBRM1Q86U86 1689 aa44.62■■■■■ 4.73
PVT1-201ENST00000504719 RIMBP3CA6NJZ7 1639 aa44.61■■■■■ 4.73
PVT1-201ENST00000504719 RIMBP3BA6NNM3 1639 aa44.61■■■■■ 4.73
PVT1-201ENST00000504719 ABCA5Q8WWZ7 1642 aa44.61■■■■■ 4.73
PVT1-201ENST00000504719 RIMBP3Q9UFD9 1639 aa44.61■■■■■ 4.73
PVT1-201ENST00000504719 ARHGEF11O15085 1522 aa44.51■■■■■ 4.72
PVT1-201ENST00000504719 CHMP7Q8WUX9 453 aaPredicted RBP44.51■■■■■ 4.72
PVT1-201ENST00000504719 SYNJ2O15056 1496 aa44.48■■■■■ 4.71
PVT1-201ENST00000504719 CLASP1Q7Z460 1538 aa44.34■■■■■ 4.69
PVT1-201ENST00000504719 ADAMTS12P58397 1594 aa44.2■■■■■ 4.67
PVT1-201ENST00000504719 ERICH3Q5RHP9 1530 aa44.18■■■■■ 4.66
PVT1-201ENST00000504719 CYB5RLQ6IPT4 315 aa44.13■■■■■ 4.66
PVT1-201ENST00000504719 GRIN2AQ12879 1464 aa44.13■■■■■ 4.65
PVT1-201ENST00000504719 ARAP1Q96P48 1450 aa44.13■■■■■ 4.65
PVT1-201ENST00000504719 FHAD1B1AJZ9 1412 aa44.1■■■■■ 4.65
PVT1-201ENST00000504719 NUP160Q12769 1436 aa43.97■■■■■ 4.63
PVT1-201ENST00000504719 CEP170Q5SW79 1584 aa43.95■■■■■ 4.63
PVT1-201ENST00000504719 KIF27Q86VH2 1401 aa43.84■■■■■ 4.61
PVT1-201ENST00000504719 IGF1RP08069 1367 aa43.76■■■■■ 4.6
PVT1-201ENST00000504719 SHROOM2Q13796 1616 aa43.72■■■■■ 4.59
PVT1-201ENST00000504719 ERCC6L2Q5T890 1561 aa43.69■■■■■ 4.58
PVT1-201ENST00000504719 CUL7Q14999 1698 aa43.67■■■■■ 4.58
PVT1-201ENST00000504719 RUSC2Q8N2Y8 1516 aa43.56■■■■■ 4.56
PVT1-201ENST00000504719 JPH4Q96JJ6 628 aa43.51■■■■■ 4.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms