RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 FMN1Q68DA7 1419 aa16.02■□□□□ 0.15
NUP54-203ENST00000504173 SIGLEC1Q9BZZ2 1709 aa16.01■□□□□ 0.15
NUP54-203ENST00000504173 ZMYM4Q5VZL5 1548 aa16■□□□□ 0.15
NUP54-203ENST00000504173 DENND4BO75064 1496 aaPredicted RBP16■□□□□ 0.15
NUP54-203ENST00000504173 MED1Q15648 1581 aaPredicted RBP16■□□□□ 0.15
NUP54-203ENST00000504173 RICTORQ6R327 1708 aa15.99■□□□□ 0.15
NUP54-203ENST00000504173 ARHGEF12Q9NZN5 1544 aa15.99■□□□□ 0.15
NUP54-203ENST00000504173 RAPGEF6Q8TEU7 1601 aa15.98■□□□□ 0.15
NUP54-203ENST00000504173 UHRF1BP1Q6BDS2 1440 aa15.98■□□□□ 0.15
NUP54-203ENST00000504173 ATP10BO94823 1461 aa15.97■□□□□ 0.15
NUP54-203ENST00000504173 MAGI2Q86UL8 1455 aa15.97■□□□□ 0.15
NUP54-203ENST00000504173 ZFYVE16Q7Z3T8 1539 aa15.96■□□□□ 0.15
NUP54-203ENST00000504173 ATP1B4Q9UN42 357 aaPredicted RBP15.93■□□□□ 0.14
NUP54-203ENST00000504173 ARID3CA6NKF2 412 aa15.92■□□□□ 0.14
NUP54-203ENST00000504173 SETD1BQ9UPS6 1966 aaKnown RBP15.92■□□□□ 0.14
NUP54-203ENST00000504173 NUP153P49790 1475 aaKnown RBP15.91■□□□□ 0.14
NUP54-203ENST00000504173 HECW1Q76N89 1606 aa15.91■□□□□ 0.14
NUP54-203ENST00000504173 UBAP1LF5GYI3 381 aa15.91■□□□□ 0.14
NUP54-203ENST00000504173 CASKIN1Q8WXD9 1431 aa15.91■□□□□ 0.14
NUP54-203ENST00000504173 MLECQ14165 292 aa15.9■□□□□ 0.14
NUP54-203ENST00000504173 NCOA1Q15788 1441 aa15.89■□□□□ 0.13
NUP54-203ENST00000504173 VPS8Q8N3P4 1428 aa15.89■□□□□ 0.13
NUP54-203ENST00000504173 CEBPAP49715 358 aaPredicted RBP15.89■□□□□ 0.13
NUP54-203ENST00000504173 FYCO1Q9BQS8 1478 aa15.89■□□□□ 0.13
NUP54-203ENST00000504173 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
NUP54-203ENST00000504173 HNRNPUL2Q1KMD3 747 aaKnown RBP15.87■□□□□ 0.13
NUP54-203ENST00000504173 CFAP74Q9C0B2 1584 aa15.87■□□□□ 0.13
NUP54-203ENST00000504173 CDK13Q14004 1512 aaKnown RBP15.84■□□□□ 0.13
NUP54-203ENST00000504173 CCDC18Q5T9S5 1454 aa15.84■□□□□ 0.13
NUP54-203ENST00000504173 C9orf84Q5VXU9 1444 aa15.83■□□□□ 0.12
NUP54-203ENST00000504173 ATP10AO60312 1499 aa15.83■□□□□ 0.12
NUP54-203ENST00000504173 HSPA1LP34931 641 aa15.82■□□□□ 0.12
NUP54-203ENST00000504173 LRRIQ1Q96JM4 1722 aa15.82■□□□□ 0.12
NUP54-203ENST00000504173 PHF23Q9BUL5 403 aaPredicted RBP15.8■□□□□ 0.12
NUP54-203ENST00000504173 ZNF335Q9H4Z2 1342 aaPredicted RBP15.79■□□□□ 0.12
NUP54-203ENST00000504173 CDK11AQ9UQ88 783 aaPredicted RBP15.78■□□□□ 0.12
NUP54-203ENST00000504173 TRAPPC8Q9Y2L5 1435 aa15.77■□□□□ 0.12
NUP54-203ENST00000504173 PLEKHD1A6NEE1 506 aa15.77■□□□□ 0.12
NUP54-203ENST00000504173 C3P01024 1663 aa15.74■□□□□ 0.11
NUP54-203ENST00000504173 APLP2Q06481 763 aa15.74■□□□□ 0.11
NUP54-203ENST00000504173 CAMSAP1Q5T5Y3 1602 aa15.73■□□□□ 0.11
NUP54-203ENST00000504173 TIAM1Q13009 1591 aa15.73■□□□□ 0.11
NUP54-203ENST00000504173 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.73■□□□□ 0.115e-6■□□□□ 11
NUP54-203ENST00000504173 TROQ12816 1431 aaPredicted RBP15.72■□□□□ 0.11
NUP54-203ENST00000504173 SCAPERQ9BY12 1400 aa15.71■□□□□ 0.11
NUP54-203ENST00000504173 MAP3K1Q13233 1512 aa15.7■□□□□ 0.1
NUP54-203ENST00000504173 MTUS2Q5JR59 1369 aa15.7■□□□□ 0.1
NUP54-203ENST00000504173 TOM1O60784 492 aa15.69■□□□□ 0.1
NUP54-203ENST00000504173 PLA2R1Q13018 1463 aa15.69■□□□□ 0.1
NUP54-203ENST00000504173 REREQ9P2R6 1566 aa15.69■□□□□ 0.1
NUP54-203ENST00000504173 KIF14Q15058 1648 aa15.68■□□□□ 0.1
NUP54-203ENST00000504173 EHBP1L1Q8N3D4 1523 aa15.68■□□□□ 0.1
NUP54-203ENST00000504173 PKD2Q13563 968 aa15.67■□□□□ 0.1
NUP54-203ENST00000504173 NPATQ14207 1427 aa15.67■□□□□ 0.1
NUP54-203ENST00000504173 TCOF1Q13428 1488 aaKnown RBP15.66■□□□□ 0.1
NUP54-203ENST00000504173 PIP4K2BP78356 416 aa15.66■□□□□ 0.1
NUP54-203ENST00000504173 AGLP35573 1532 aa15.66■□□□□ 0.1
NUP54-203ENST00000504173 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
NUP54-203ENST00000504173 NCKAP5LQ9HCH0 1330 aa15.66■□□□□ 0.1
NUP54-203ENST00000504173 LRRC9Q6ZRR7 1453 aa15.65■□□□□ 0.1
NUP54-203ENST00000504173 PLCH2O75038 1416 aa15.64■□□□□ 0.09
NUP54-203ENST00000504173 CNTLNQ9NXG0 1405 aa15.64■□□□□ 0.09
NUP54-203ENST00000504173 RGS17Q9UGC6 210 aaPredicted RBP15.64■□□□□ 0.09
NUP54-203ENST00000504173 KANK4Q5T7N3 995 aaPredicted RBP15.63■□□□□ 0.09
NUP54-203ENST00000504173 CPS1P31327 1500 aa15.62■□□□□ 0.09
NUP54-203ENST00000504173 KDM5CP41229 1560 aa15.62■□□□□ 0.09
NUP54-203ENST00000504173 ZNF518AQ6AHZ1 1483 aa15.61■□□□□ 0.09
NUP54-203ENST00000504173 DIP2CQ9Y2E4 1556 aa15.61■□□□□ 0.09
NUP54-203ENST00000504173 SUPT6HQ7KZ85 1726 aaKnown RBP15.6■□□□□ 0.09
NUP54-203ENST00000504173 ESF1Q9H501 851 aaKnown RBP15.6■□□□□ 0.09
NUP54-203ENST00000504173 PTPRKQ15262 1439 aa15.59■□□□□ 0.09
NUP54-203ENST00000504173 ALKQ9UM73 1620 aa15.58■□□□□ 0.09
NUP54-203ENST00000504173 ZNF142P52746 1687 aaPredicted RBP15.58■□□□□ 0.08
NUP54-203ENST00000504173 PPP6R1Q9UPN7 881 aa15.58■□□□□ 0.08
NUP54-203ENST00000504173 NCOA2Q15596 1464 aa15.58■□□□□ 0.08
NUP54-203ENST00000504173 MYO5CQ9NQX4 1742 aa15.57■□□□□ 0.08
NUP54-203ENST00000504173 CCNB3Q8WWL7 1395 aa15.56■□□□□ 0.08
NUP54-203ENST00000504173 MROH2AA6NES4 1674 aa15.55■□□□□ 0.08
NUP54-203ENST00000504173 EFCAB2Q5VUJ9 269 aa15.54■□□□□ 0.08
NUP54-203ENST00000504173 MLH3Q9UHC1 1453 aa15.53■□□□□ 0.08
NUP54-203ENST00000504173 PPARGC1BQ86YN6 1023 aaKnown RBP15.53■□□□□ 0.08
NUP54-203ENST00000504173 CDC42BPAQ5VT25 1732 aa15.53■□□□□ 0.08
NUP54-203ENST00000504173 PREX2Q70Z35 1606 aa15.53■□□□□ 0.08
NUP54-203ENST00000504173 ABCA6Q8N139 1617 aa15.53■□□□□ 0.08
NUP54-203ENST00000504173 ARHGAP5Q13017 1502 aa15.53■□□□□ 0.08
NUP54-203ENST00000504173 GPATCH8Q9UKJ3 1502 aaKnown RBP15.53■□□□□ 0.08
NUP54-203ENST00000504173 SHANK2Q9UPX8 1470 aa15.52■□□□□ 0.08
NUP54-203ENST00000504173 MYO3AQ8NEV4 1616 aa15.52■□□□□ 0.08
NUP54-203ENST00000504173 CEP170BQ9Y4F5 1589 aaPredicted RBP15.52■□□□□ 0.07
NUP54-203ENST00000504173 ITSN2Q9NZM3 1697 aa15.51■□□□□ 0.07
NUP54-203ENST00000504173 AFAP1Q8N556 730 aa15.5■□□□□ 0.07
NUP54-203ENST00000504173 CDC42BPBQ9Y5S2 1711 aa15.5■□□□□ 0.07
NUP54-203ENST00000504173 ZMYM3Q14202 1370 aa15.49■□□□□ 0.07
NUP54-203ENST00000504173 CFDP1Q9UEE9 299 aaPredicted RBP15.49■□□□□ 0.07
NUP54-203ENST00000504173 POTEAQ6S8J7 498 aa15.48■□□□□ 0.07
NUP54-203ENST00000504173 MYOM3Q5VTT5 1437 aa15.47■□□□□ 0.07
NUP54-203ENST00000504173 ZNF777Q9ULD5 760 aaPredicted RBP15.46■□□□□ 0.07
NUP54-203ENST00000504173 SRCAPQ6ZRS2 3230 aa15.45■□□□□ 0.06
NUP54-203ENST00000504173 VWDEQ8N2E2 1590 aa15.44■□□□□ 0.06
NUP54-203ENST00000504173 NEURL4Q96JN8 1562 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms