RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 KANK4Q5T7N3 995 aaPredicted RBP15.46■□□□□ 0.07
HDAC3-214ENST00000495485 ITSN2Q9NZM3 1697 aa15.46■□□□□ 0.07
HDAC3-214ENST00000495485 PREX2Q70Z35 1606 aa15.46■□□□□ 0.06
HDAC3-214ENST00000495485 FANCAO15360 1455 aa15.46■□□□□ 0.06
HDAC3-214ENST00000495485 EFCAB2Q5VUJ9 269 aa15.45■□□□□ 0.06
HDAC3-214ENST00000495485 CDC42BPAQ5VT25 1732 aa15.44■□□□□ 0.06
HDAC3-214ENST00000495485 CDC42BPBQ9Y5S2 1711 aa15.43■□□□□ 0.06
HDAC3-214ENST00000495485 CCNB3Q8WWL7 1395 aa15.42■□□□□ 0.06
HDAC3-214ENST00000495485 PLEKHH2Q8IVE3 1493 aa15.41■□□□□ 0.06
HDAC3-214ENST00000495485 ARHGAP5Q13017 1502 aa15.41■□□□□ 0.06
HDAC3-214ENST00000495485 AKNAQ7Z591 1439 aa15.41■□□□□ 0.06
HDAC3-214ENST00000495485 RRBP1Q9P2E9 1410 aaKnown RBP15.4■□□□□ 0.06
HDAC3-214ENST00000495485 NCOA2Q15596 1464 aa15.4■□□□□ 0.06
HDAC3-214ENST00000495485 GPATCH8Q9UKJ3 1502 aaKnown RBP15.39■□□□□ 0.05
HDAC3-214ENST00000495485 DENND4BO75064 1496 aaPredicted RBP15.37■□□□□ 0.05
HDAC3-214ENST00000495485 ADGRL1O94910 1474 aa15.37■□□□□ 0.05
HDAC3-214ENST00000495485 KIAA1107Q9UPP5 1409 aa15.36■□□□□ 0.05
HDAC3-214ENST00000495485 MIA2Q96PC5 1412 aa15.35■□□□□ 0.05
HDAC3-214ENST00000495485 CFDP1Q9UEE9 299 aaPredicted RBP15.35■□□□□ 0.05
HDAC3-214ENST00000495485 RICTORQ6R327 1708 aa15.34■□□□□ 0.05
HDAC3-214ENST00000495485 ZNF518AQ6AHZ1 1483 aa15.34■□□□□ 0.05
HDAC3-214ENST00000495485 MAGI2Q86UL8 1455 aa15.34■□□□□ 0.05
HDAC3-214ENST00000495485 ABCC1P33527 1531 aa15.33■□□□□ 0.05
HDAC3-214ENST00000495485 ZMYM4Q5VZL5 1548 aa15.33■□□□□ 0.05
HDAC3-214ENST00000495485 RSPH4AQ5TD94 716 aa15.33■□□□□ 0.04
HDAC3-214ENST00000495485 SCAPERQ9BY12 1400 aa15.33■□□□□ 0.04
HDAC3-214ENST00000495485 CCER1Q8TC90 406 aaPredicted RBP15.32■□□□□ 0.04
HDAC3-214ENST00000495485 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.32■□□□□ 0.04
HDAC3-214ENST00000495485 MYOM3Q5VTT5 1437 aa15.32■□□□□ 0.04
HDAC3-214ENST00000495485 POGZQ7Z3K3 1410 aa15.32■□□□□ 0.04
HDAC3-214ENST00000495485 COL17A1Q9UMD9 1497 aaPredicted RBP15.32■□□□□ 0.04
HDAC3-214ENST00000495485 KDM5CP41229 1560 aa15.29■□□□□ 0.04
HDAC3-214ENST00000495485 SAMD9LQ8IVG5 1584 aa15.29■□□□□ 0.04
HDAC3-214ENST00000495485 FRMPD1Q5SYB0 1578 aa15.27■□□□□ 0.03
HDAC3-214ENST00000495485 ARHGEF5Q12774 1597 aa15.26■□□□□ 0.03
HDAC3-214ENST00000495485 MLH3Q9UHC1 1453 aa15.26■□□□□ 0.03
HDAC3-214ENST00000495485 CAMSAP2Q08AD1 1489 aa15.25■□□□□ 0.03
HDAC3-214ENST00000495485 HECW2Q9P2P5 1572 aa15.24■□□□□ 0.03
HDAC3-214ENST00000495485 SYCP2Q9BX26 1530 aa15.24■□□□□ 0.03
HDAC3-214ENST00000495485 FAM50AQ14320 339 aaKnown RBP15.24■□□□□ 0.03
HDAC3-214ENST00000495485 ZNF777Q9ULD5 760 aaPredicted RBP15.24■□□□□ 0.03
HDAC3-214ENST00000495485 ARHGEF40Q8TER5 1519 aa15.23■□□□□ 0.03
HDAC3-214ENST00000495485 RAPGEF3O95398 923 aa15.23■□□□□ 0.03
HDAC3-214ENST00000495485 FGD6Q6ZV73 1430 aa15.23■□□□□ 0.03
HDAC3-214ENST00000495485 ZFYVE16Q7Z3T8 1539 aa15.22■□□□□ 0.03
HDAC3-214ENST00000495485 CCDC141Q6ZP82 1450 aa15.22■□□□□ 0.03
HDAC3-214ENST00000495485 RTEL1-TNFRSF6BF6WH68 1400 aa15.22■□□□□ 0.03
HDAC3-214ENST00000495485 PTPN23Q9H3S7 1636 aa15.21■□□□□ 0.03
HDAC3-214ENST00000495485 TCOF1Q13428 1488 aaKnown RBP15.21■□□□□ 0.03
HDAC3-214ENST00000495485 MBD5Q9P267 1494 aa15.21■□□□□ 0.03
HDAC3-214ENST00000495485 ARHGEF12Q9NZN5 1544 aa15.21■□□□□ 0.03
HDAC3-214ENST00000495485 REREQ9P2R6 1566 aa15.2■□□□□ 0.02
HDAC3-214ENST00000495485 TRAPPC8Q9Y2L5 1435 aa15.19■□□□□ 0.02
HDAC3-214ENST00000495485 SPAG9O60271 1321 aaKnown RBP15.18■□□□□ 0.02
HDAC3-214ENST00000495485 TSPY4P0CV99 314 aa15.18■□□□□ 0.02
HDAC3-214ENST00000495485 TSPY10P0CW01 314 aa15.18■□□□□ 0.02
HDAC3-214ENST00000495485 CLSPNQ9HAW4 1339 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 KIDINS220Q9ULH0 1771 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 INO80Q9ULG1 1556 aaPredicted RBP15.17■□□□□ 0.02
HDAC3-214ENST00000495485 MAST1Q9Y2H9 1570 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 ATP10AO60312 1499 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 SHANK2Q9UPX8 1470 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 ITGAEP38570 1179 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 HNRNPMP52272 730 aaKnown RBP eCLIP15.17■□□□□ 0.02
HDAC3-214ENST00000495485 AFAP1Q8N556 730 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 ATP7AQ04656 1500 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 C9orf84Q5VXU9 1444 aa15.17■□□□□ 0.02
HDAC3-214ENST00000495485 ACIN1Q9UKV3 1341 aaKnown RBP15.16■□□□□ 0.02
HDAC3-214ENST00000495485 ADGBQ8N7X0 1667 aa15.16■□□□□ 0.02
HDAC3-214ENST00000495485 ZNF644Q9H582 1327 aaPredicted RBP15.15■□□□□ 0.02
HDAC3-214ENST00000495485 DNMT1P26358 1616 aaKnown RBP15.14■□□□□ 0.01
HDAC3-214ENST00000495485 CROCC2H7BZ55 1655 aa15.14■□□□□ 0.01
HDAC3-214ENST00000495485 DIP2CQ9Y2E4 1556 aa15.14■□□□□ 0.01
HDAC3-214ENST00000495485 SETD5Q9C0A6 1442 aa15.13■□□□□ 0.01
HDAC3-214ENST00000495485 MYT1LQ9UL68 1186 aa15.13■□□□□ 0.01
HDAC3-214ENST00000495485 AGLP35573 1532 aa15.12■□□□□ 0.01
HDAC3-214ENST00000495485 ABCA6Q8N139 1617 aa15.12■□□□□ 0.01
HDAC3-214ENST00000495485 PLXNC1O60486 1568 aa15.11■□□□□ 0.01
HDAC3-214ENST00000495485 YEATS2Q9ULM3 1422 aa15.11■□□□□ 0.01
HDAC3-214ENST00000495485 DAPK1P53355 1430 aa15.09■□□□□ 0.01
HDAC3-214ENST00000495485 BCORL1Q5H9F3 1711 aa15.08■□□□□ 0
HDAC3-214ENST00000495485 ABCC5O15440 1437 aa15.08■□□□□ 0
HDAC3-214ENST00000495485 A2MP01023 1474 aa15.08■□□□□ 0
HDAC3-214ENST00000495485 PPP6R1Q9UPN7 881 aa15.07■□□□□ 0
HDAC3-214ENST00000495485 FAM135AQ9P2D6 1515 aa15.07■□□□□ 0
HDAC3-214ENST00000495485 DHX29Q7Z478 1369 aaKnown RBP15.06■□□□□ 0
HDAC3-214ENST00000495485 ANKRD30AQ9BXX3 1397 aa15.06■□□□□ 0
HDAC3-214ENST00000495485 ADGRL2O95490 1459 aa15.06■□□□□ 0
HDAC3-214ENST00000495485 RAB3GAP2Q9H2M9 1393 aa15.05■□□□□ -0
HDAC3-214ENST00000495485 EIF2AK4Q9P2K8 1649 aaKnown RBP15.05■□□□□ -0
HDAC3-214ENST00000495485 DUOX2Q9NRD8 1548 aa15.04■□□□□ -0
HDAC3-214ENST00000495485 ROCK1Q13464 1354 aa15.04■□□□□ -0
HDAC3-214ENST00000495485 ARID4BQ4LE39 1312 aaPredicted RBP15.04■□□□□ -0
HDAC3-214ENST00000495485 ADAMTSL3P82987 1691 aa15.03■□□□□ -0
HDAC3-214ENST00000495485 HFM1A2PYH4 1435 aa15.02■□□□□ -0
HDAC3-214ENST00000495485 NCOA1Q15788 1441 aa15.01□□□□□ -0.01
HDAC3-214ENST00000495485 ERBINQ96RT1 1412 aa15.01□□□□□ -0.01
HDAC3-214ENST00000495485 DHX57Q6P158 1386 aaKnown RBP15.01□□□□□ -0.01
HDAC3-214ENST00000495485 CNTLNQ9NXG0 1405 aa15□□□□□ -0.01
HDAC3-214ENST00000495485 KIF15Q9NS87 1388 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms