RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GCC2Q8IWJ2 1684 aa23.31■■□□□ 1.32
CCDC88B-210ENST00000494566 KDM5BQ9UGL1 1544 aa23.29■■□□□ 1.32
CCDC88B-210ENST00000494566 IRX6P78412 446 aaPredicted RBP23.28■■□□□ 1.32
CCDC88B-210ENST00000494566 DAPK1P53355 1430 aa23.28■■□□□ 1.32
CCDC88B-210ENST00000494566 JPH4Q96JJ6 628 aa23.26■■□□□ 1.31
CCDC88B-210ENST00000494566 ABCC5O15440 1437 aa23.26■■□□□ 1.31
CCDC88B-210ENST00000494566 CDK11AQ9UQ88 783 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-210ENST00000494566 SYNJ2O15056 1496 aa23.25■■□□□ 1.31
CCDC88B-210ENST00000494566 MAGI1Q96QZ7 1491 aaPredicted RBP23.24■■□□□ 1.31
CCDC88B-210ENST00000494566 CNGB1Q14028 1251 aaPredicted RBP23.24■■□□□ 1.31
CCDC88B-210ENST00000494566 ANP32CO43423 234 aa23.23■■□□□ 1.31
CCDC88B-210ENST00000494566 CFDP1Q9UEE9 299 aaPredicted RBP23.23■■□□□ 1.31
CCDC88B-210ENST00000494566 L3MBTL2Q969R5 705 aa23.22■■□□□ 1.31
CCDC88B-210ENST00000494566 HSPA5P11021 654 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-210ENST00000494566 AKNAQ7Z591 1439 aa23.19■■□□□ 1.3
CCDC88B-210ENST00000494566 KIF14Q15058 1648 aa23.19■■□□□ 1.3
CCDC88B-210ENST00000494566 SLC4A1APQ9BWU0 796 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-210ENST00000494566 TROQ12816 1431 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-210ENST00000494566 DNMT1P26358 1616 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-210ENST00000494566 NEFLP07196 543 aa23.16■■□□□ 1.3
CCDC88B-210ENST00000494566 CAMSAP2Q08AD1 1489 aa23.14■■□□□ 1.3
CCDC88B-210ENST00000494566 CARMIL2Q6F5E8 1435 aa23.13■■□□□ 1.29
CCDC88B-210ENST00000494566 WASHC2AQ641Q2 1341 aa23.12■■□□□ 1.29
CCDC88B-210ENST00000494566 GPATCH8Q9UKJ3 1502 aaKnown RBP23.12■■□□□ 1.29
CCDC88B-210ENST00000494566 NUP160Q12769 1436 aa23.11■■□□□ 1.29
CCDC88B-210ENST00000494566 ROCK1Q13464 1354 aa23.11■■□□□ 1.29
CCDC88B-210ENST00000494566 NBPF8Q3BBV2 869 aa23.1■■□□□ 1.29
CCDC88B-210ENST00000494566 SENP3-EIF4A1A0A087X0R7 540 aa23.1■■□□□ 1.29
CCDC88B-210ENST00000494566 ANKRD30BQ9BXX2 1392 aa23.09■■□□□ 1.29
CCDC88B-210ENST00000494566 EIF4G2P78344 907 aaKnown RBP eCLIP23.08■■□□□ 1.28
CCDC88B-210ENST00000494566 C11orf95C9JLR9 678 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-210ENST00000494566 PLEKHD1A6NEE1 506 aa23.06■■□□□ 1.28
CCDC88B-210ENST00000494566 CCER2I3L3R5 266 aa23.05■■□□□ 1.28
CCDC88B-210ENST00000494566 HNRNPUQ00839 825 aaKnown RBP eCLIP23.05■■□□□ 1.28
CCDC88B-210ENST00000494566 ANP32EQ9BTT0 268 aa23.04■■□□□ 1.28
CCDC88B-210ENST00000494566 NCOA1Q15788 1441 aa23.03■■□□□ 1.28
CCDC88B-210ENST00000494566 ZNF326Q5BKZ1 582 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-210ENST00000494566 ATP10BO94823 1461 aa23.01■■□□□ 1.27
CCDC88B-210ENST00000494566 RPRD2Q5VT52 1461 aaKnown RBP23.01■■□□□ 1.27
CCDC88B-210ENST00000494566 ITSN2Q9NZM3 1697 aa23.01■■□□□ 1.27
CCDC88B-210ENST00000494566 PZPP20742 1482 aa23■■□□□ 1.27
CCDC88B-210ENST00000494566 RBM19Q9Y4C8 960 aaKnown RBP23■■□□□ 1.27
CCDC88B-210ENST00000494566 PKD2Q13563 968 aa22.98■■□□□ 1.27
CCDC88B-210ENST00000494566 HNRNPMP52272 730 aaKnown RBP eCLIP22.98■■□□□ 1.27
CCDC88B-210ENST00000494566 TEX14Q8IWB6 1497 aa22.98■■□□□ 1.27
CCDC88B-210ENST00000494566 ABCA8O94911 1581 aa22.96■■□□□ 1.27
CCDC88B-210ENST00000494566 ADCY10Q96PN6 1610 aa22.96■■□□□ 1.27
CCDC88B-210ENST00000494566 CCDC184Q52MB2 194 aa22.95■■□□□ 1.26
CCDC88B-210ENST00000494566 CDC42BPAQ5VT25 1732 aa22.95■■□□□ 1.26
CCDC88B-210ENST00000494566 ANKRD30AQ9BXX3 1397 aa22.93■■□□□ 1.26
CCDC88B-210ENST00000494566 ADGBQ8N7X0 1667 aa22.93■■□□□ 1.26
CCDC88B-210ENST00000494566 PTPRGP23470 1445 aa22.92■■□□□ 1.26
CCDC88B-210ENST00000494566 POLR3GLQ9BT43 218 aa22.92■■□□□ 1.26
CCDC88B-210ENST00000494566 ANKRD50Q9ULJ7 1429 aa22.92■■□□□ 1.26
CCDC88B-210ENST00000494566 CROCC2H7BZ55 1655 aa22.91■■□□□ 1.26
CCDC88B-210ENST00000494566 ABCC10Q5T3U5 1492 aa22.91■■□□□ 1.26
CCDC88B-210ENST00000494566 CCDC7Q96M83 1385 aa22.89■■□□□ 1.26
CCDC88B-210ENST00000494566 FAM9BQ8IZU0 186 aa22.89■■□□□ 1.25
CCDC88B-210ENST00000494566 C9orf84Q5VXU9 1444 aa22.88■■□□□ 1.25
CCDC88B-210ENST00000494566 NUP155O75694 1391 aa22.88■■□□□ 1.25
CCDC88B-210ENST00000494566 TSPY4P0CV99 314 aa22.88■■□□□ 1.25
CCDC88B-210ENST00000494566 TSPY10P0CW01 314 aa22.88■■□□□ 1.25
CCDC88B-210ENST00000494566 ADGRL2O95490 1459 aa22.87■■□□□ 1.25
CCDC88B-210ENST00000494566 KIAA1107Q9UPP5 1409 aa22.87■■□□□ 1.25
CCDC88B-210ENST00000494566 CNTLNQ9NXG0 1405 aa22.86■■□□□ 1.25
CCDC88B-210ENST00000494566 KIF7Q2M1P5 1343 aa22.85■■□□□ 1.25
CCDC88B-210ENST00000494566 CHD1O14646 1710 aa22.84■■□□□ 1.25
CCDC88B-210ENST00000494566 KDM2AQ9Y2K7 1162 aa22.83■■□□□ 1.24
CCDC88B-210ENST00000494566 KIF15Q9NS87 1388 aa22.8■■□□□ 1.24
CCDC88B-210ENST00000494566 SPATA31E1Q6ZUB1 1445 aa22.8■■□□□ 1.24
CCDC88B-210ENST00000494566 ERCC6L2Q5T890 1561 aa22.8■■□□□ 1.24
CCDC88B-210ENST00000494566 PRKRIP1Q9H875 184 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-210ENST00000494566 MSH5O43196 834 aa22.76■■□□□ 1.23
CCDC88B-210ENST00000494566 MRS2Q9HD23 443 aa22.75■■□□□ 1.23
CCDC88B-210ENST00000494566 USP47Q96K76 1375 aa22.75■■□□□ 1.23
CCDC88B-210ENST00000494566 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.75■■□□□ 1.23
CCDC88B-210ENST00000494566 CDC42BPBQ9Y5S2 1711 aa22.74■■□□□ 1.23
CCDC88B-210ENST00000494566 MBD5Q9P267 1494 aa22.74■■□□□ 1.23
CCDC88B-210ENST00000494566 SAMD9LQ8IVG5 1584 aa22.74■■□□□ 1.23
CCDC88B-210ENST00000494566 SHANK2Q9UPX8 1470 aa22.72■■□□□ 1.23
CCDC88B-210ENST00000494566 B4GALNT3Q6L9W6 998 aa22.71■■□□□ 1.23
CCDC88B-210ENST00000494566 DCAF11Q8TEB1 546 aa22.71■■□□□ 1.23
CCDC88B-210ENST00000494566 BCORL1Q5H9F3 1711 aa22.7■■□□□ 1.22
CCDC88B-210ENST00000494566 TTC37Q6PGP7 1564 aa22.69■■□□□ 1.22
CCDC88B-210ENST00000494566 SYCP2Q9BX26 1530 aa22.69■■□□□ 1.22
CCDC88B-210ENST00000494566 CARD11Q9BXL7 1154 aa22.68■■□□□ 1.22
CCDC88B-210ENST00000494566 ARHGAP5Q13017 1502 aa22.68■■□□□ 1.22
CCDC88B-210ENST00000494566 CCDC141Q6ZP82 1450 aa22.68■■□□□ 1.22
CCDC88B-210ENST00000494566 RGL3Q3MIN7 710 aa22.67■■□□□ 1.22
CCDC88B-210ENST00000494566 PREX2Q70Z35 1606 aa22.66■■□□□ 1.22
CCDC88B-210ENST00000494566 BCL11AQ9H165 835 aa22.64■■□□□ 1.21
CCDC88B-210ENST00000494566 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.64■■□□□ 1.21
CCDC88B-210ENST00000494566 ARHGEF5Q12774 1597 aa22.63■■□□□ 1.21
CCDC88B-210ENST00000494566 ERICH6Q7L0X2 663 aa22.63■■□□□ 1.21
CCDC88B-210ENST00000494566 ST20-MTHFSA0A0A6YYL1 179 aa22.61■■□□□ 1.21
CCDC88B-210ENST00000494566 KDM5CP41229 1560 aa22.6■■□□□ 1.21
CCDC88B-210ENST00000494566 POLR1AO95602 1720 aaPredicted RBP22.6■■□□□ 1.21
CCDC88B-210ENST00000494566 FAM135AQ9P2D6 1515 aa22.6■■□□□ 1.21
CCDC88B-210ENST00000494566 SHROOM2Q13796 1616 aa22.58■■□□□ 1.21
CCDC88B-210ENST00000494566 DHX29Q7Z478 1369 aaKnown RBP22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms