RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 DIP2BQ9P265 1576 aa17.39■□□□□ 0.37
MCF2L-231ENST00000494043 PLCH2O75038 1416 aa17.38■□□□□ 0.37
MCF2L-231ENST00000494043 CDC42BPBQ9Y5S2 1711 aa17.38■□□□□ 0.37
MCF2L-231ENST00000494043 ARHGAP5Q13017 1502 aa17.37■□□□□ 0.37
MCF2L-231ENST00000494043 FAM50AQ14320 339 aaKnown RBP17.36■□□□□ 0.37
MCF2L-231ENST00000494043 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
MCF2L-231ENST00000494043 CAMSAP2Q08AD1 1489 aa17.36■□□□□ 0.37
MCF2L-231ENST00000494043 CD109Q6YHK3 1445 aa17.34■□□□□ 0.37
MCF2L-231ENST00000494043 MAP3K4Q9Y6R4 1608 aa17.34■□□□□ 0.37
MCF2L-231ENST00000494043 SAMD9LQ8IVG5 1584 aa17.33■□□□□ 0.37
MCF2L-231ENST00000494043 ZNF644Q9H582 1327 aaPredicted RBP17.32■□□□□ 0.36
MCF2L-231ENST00000494043 FAM69CQ0P6D2 419 aa17.31■□□□□ 0.36
MCF2L-231ENST00000494043 ZNF777Q9ULD5 760 aaPredicted RBP17.31■□□□□ 0.36
MCF2L-231ENST00000494043 EFCAB2Q5VUJ9 269 aa17.3■□□□□ 0.36
MCF2L-231ENST00000494043 FANCAO15360 1455 aa17.3■□□□□ 0.36
MCF2L-231ENST00000494043 PLEKHH2Q8IVE3 1493 aa17.29■□□□□ 0.36
MCF2L-231ENST00000494043 KIF13AQ9H1H9 1805 aa17.28■□□□□ 0.36
MCF2L-231ENST00000494043 DNMT1P26358 1616 aaKnown RBP17.28■□□□□ 0.36
MCF2L-231ENST00000494043 CFAP74Q9C0B2 1584 aa17.28■□□□□ 0.36
MCF2L-231ENST00000494043 ABCC1P33527 1531 aa17.27■□□□□ 0.36
MCF2L-231ENST00000494043 KIAA1107Q9UPP5 1409 aa17.27■□□□□ 0.35
MCF2L-231ENST00000494043 SYCP2Q9BX26 1530 aa17.26■□□□□ 0.35
MCF2L-231ENST00000494043 ARHGEF5Q12774 1597 aa17.26■□□□□ 0.35
MCF2L-231ENST00000494043 MBD5Q9P267 1494 aa17.25■□□□□ 0.35
MCF2L-231ENST00000494043 ABCC5O15440 1437 aa17.25■□□□□ 0.35
MCF2L-231ENST00000494043 DAPK1P53355 1430 aa17.25■□□□□ 0.35
MCF2L-231ENST00000494043 ITGAEP38570 1179 aa17.25■□□□□ 0.35
MCF2L-231ENST00000494043 NEO1Q92859 1461 aa17.24■□□□□ 0.35
MCF2L-231ENST00000494043 PTPRKQ15262 1439 aa17.23■□□□□ 0.35
MCF2L-231ENST00000494043 AKNAQ7Z591 1439 aa17.23■□□□□ 0.35
MCF2L-231ENST00000494043 ARHGEF12Q9NZN5 1544 aa17.23■□□□□ 0.35
MCF2L-231ENST00000494043 PPRC1Q5VV67 1664 aaKnown RBP17.23■□□□□ 0.35
MCF2L-231ENST00000494043 ADGRL1O94910 1474 aa17.22■□□□□ 0.35
MCF2L-231ENST00000494043 CCDC141Q6ZP82 1450 aa17.22■□□□□ 0.35
MCF2L-231ENST00000494043 CROCC2H7BZ55 1655 aa17.22■□□□□ 0.35
MCF2L-231ENST00000494043 SHANK2Q9UPX8 1470 aa17.21■□□□□ 0.35
MCF2L-231ENST00000494043 HNRNPMP52272 730 aaKnown RBP eCLIP17.21■□□□□ 0.35
MCF2L-231ENST00000494043 TEX14Q8IWB6 1497 aa17.2■□□□□ 0.34
MCF2L-231ENST00000494043 RSPH4AQ5TD94 716 aa17.19■□□□□ 0.34
MCF2L-231ENST00000494043 SCAPERQ9BY12 1400 aa17.18■□□□□ 0.34
MCF2L-231ENST00000494043 TSPOAP1O95153 1857 aa17.18■□□□□ 0.34
MCF2L-231ENST00000494043 TRAPPC8Q9Y2L5 1435 aa17.17■□□□□ 0.34
MCF2L-231ENST00000494043 C9orf84Q5VXU9 1444 aa17.16■□□□□ 0.34
MCF2L-231ENST00000494043 ADGRL2O95490 1459 aa17.16■□□□□ 0.34
MCF2L-231ENST00000494043 ROCK1Q13464 1354 aa17.15■□□□□ 0.34
MCF2L-231ENST00000494043 MAST1Q9Y2H9 1570 aa17.15■□□□□ 0.34
MCF2L-231ENST00000494043 ADGBQ8N7X0 1667 aa17.15■□□□□ 0.34
MCF2L-231ENST00000494043 POGZQ7Z3K3 1410 aa17.14■□□□□ 0.33
MCF2L-231ENST00000494043 TSPY4P0CV99 314 aa17.14■□□□□ 0.33
MCF2L-231ENST00000494043 TSPY10P0CW01 314 aa17.14■□□□□ 0.33
MCF2L-231ENST00000494043 CHIC2Q9UKJ5 165 aa17.14■□□□□ 0.33
MCF2L-231ENST00000494043 HFM1A2PYH4 1435 aa17.13■□□□□ 0.33
MCF2L-231ENST00000494043 ZNF518AQ6AHZ1 1483 aa17.13■□□□□ 0.33
MCF2L-231ENST00000494043 DENND4BO75064 1496 aaPredicted RBP17.12■□□□□ 0.33
MCF2L-231ENST00000494043 TRHP20396 242 aaPredicted RBP17.12■□□□□ 0.33
MCF2L-231ENST00000494043 ANKRD30AQ9BXX3 1397 aa17.11■□□□□ 0.33
MCF2L-231ENST00000494043 NCOA1Q15788 1441 aa17.11■□□□□ 0.33
MCF2L-231ENST00000494043 KDM5CP41229 1560 aa17.11■□□□□ 0.33
MCF2L-231ENST00000494043 GCC2Q8IWJ2 1684 aa17.1■□□□□ 0.33
MCF2L-231ENST00000494043 AFAP1Q8N556 730 aa17.1■□□□□ 0.33
MCF2L-231ENST00000494043 NAIPQ13075 1403 aa17.1■□□□□ 0.33
MCF2L-231ENST00000494043 SETD5Q9C0A6 1442 aa17.1■□□□□ 0.33
MCF2L-231ENST00000494043 ZFYVE16Q7Z3T8 1539 aa17.1■□□□□ 0.33
MCF2L-231ENST00000494043 RTEL1-TNFRSF6BF6WH68 1400 aa17.09■□□□□ 0.33
MCF2L-231ENST00000494043 PLXNC1O60486 1568 aa17.09■□□□□ 0.33
MCF2L-231ENST00000494043 INO80Q9ULG1 1556 aaPredicted RBP17.09■□□□□ 0.33
MCF2L-231ENST00000494043 SPAG9O60271 1321 aaKnown RBP17.08■□□□□ 0.32
MCF2L-231ENST00000494043 RRP7BPQ9NSQ0 103 aa17.08■□□□□ 0.32
MCF2L-231ENST00000494043 RICTORQ6R327 1708 aa17.07■□□□□ 0.32
MCF2L-231ENST00000494043 FRMPD1Q5SYB0 1578 aa17.07■□□□□ 0.32
MCF2L-231ENST00000494043 ATP7AQ04656 1500 aa17.06■□□□□ 0.32
MCF2L-231ENST00000494043 RAB3GAP2Q9H2M9 1393 aa17.05■□□□□ 0.32
MCF2L-231ENST00000494043 KIF15Q9NS87 1388 aa17.05■□□□□ 0.32
MCF2L-231ENST00000494043 RAPGEF3O95398 923 aa17.05■□□□□ 0.32
MCF2L-231ENST00000494043 HECW2Q9P2P5 1572 aa17.05■□□□□ 0.32
MCF2L-231ENST00000494043 MLH3Q9UHC1 1453 aa17.05■□□□□ 0.32
MCF2L-231ENST00000494043 ZMYM4Q5VZL5 1548 aa17.04■□□□□ 0.32
MCF2L-231ENST00000494043 KIDINS220Q9ULH0 1771 aa17.02■□□□□ 0.32
MCF2L-231ENST00000494043 COL17A1Q9UMD9 1497 aaPredicted RBP17.02■□□□□ 0.32
MCF2L-231ENST00000494043 KDM6BO15054 1643 aa17.01■□□□□ 0.31
MCF2L-231ENST00000494043 DUOX2Q9NRD8 1548 aa17.01■□□□□ 0.31
MCF2L-231ENST00000494043 HRCP23327 699 aa17■□□□□ 0.31
MCF2L-231ENST00000494043 ANKRD50Q9ULJ7 1429 aa17■□□□□ 0.31
MCF2L-231ENST00000494043 MYT1LQ9UL68 1186 aa16.98■□□□□ 0.31
MCF2L-231ENST00000494043 ABCA6Q8N139 1617 aa16.98■□□□□ 0.31
MCF2L-231ENST00000494043 MAGI2Q86UL8 1455 aa16.98■□□□□ 0.31
MCF2L-231ENST00000494043 ERBINQ96RT1 1412 aa16.97■□□□□ 0.31
MCF2L-231ENST00000494043 DIP2CQ9Y2E4 1556 aa16.96■□□□□ 0.31
MCF2L-231ENST00000494043 YEATS2Q9ULM3 1422 aa16.94■□□□□ 0.3
MCF2L-231ENST00000494043 A2MP01023 1474 aa16.93■□□□□ 0.3
MCF2L-231ENST00000494043 DHX29Q7Z478 1369 aaKnown RBP16.93■□□□□ 0.3
MCF2L-231ENST00000494043 ACIN1Q9UKV3 1341 aaKnown RBP16.93■□□□□ 0.3
MCF2L-231ENST00000494043 ARHGEF40Q8TER5 1519 aa16.92■□□□□ 0.3
MCF2L-231ENST00000494043 EIF2AK4Q9P2K8 1649 aaKnown RBP16.92■□□□□ 0.3
MCF2L-231ENST00000494043 DHX57Q6P158 1386 aaKnown RBP16.89■□□□□ 0.3
MCF2L-231ENST00000494043 UNC13BO14795 1591 aa16.89■□□□□ 0.3
MCF2L-231ENST00000494043 ATP10AO60312 1499 aa16.89■□□□□ 0.29
MCF2L-231ENST00000494043 KDM5DQ9BY66 1539 aa16.88■□□□□ 0.29
MCF2L-231ENST00000494043 REREQ9P2R6 1566 aa16.88■□□□□ 0.29
MCF2L-231ENST00000494043 TRIM52Q96A61 297 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms