RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 KDM6BO15054 1643 aa17.31■□□□□ 0.36
BRCA1-222ENST00000493919 PLEKHG5O94827 1062 aa17.31■□□□□ 0.36
BRCA1-222ENST00000493919 ANP32EQ9BTT0 268 aa17.29■□□□□ 0.36
BRCA1-222ENST00000493919 LRRC9Q6ZRR7 1453 aa17.27■□□□□ 0.35
BRCA1-222ENST00000493919 MAP3K1Q13233 1512 aa17.26■□□□□ 0.35
BRCA1-222ENST00000493919 SUPT6HQ7KZ85 1726 aaKnown RBP17.26■□□□□ 0.35
BRCA1-222ENST00000493919 FANCAO15360 1455 aa17.26■□□□□ 0.35
BRCA1-222ENST00000493919 ARHGAP5Q13017 1502 aa17.26■□□□□ 0.35
BRCA1-222ENST00000493919 CFAP74Q9C0B2 1584 aa17.25■□□□□ 0.35
BRCA1-222ENST00000493919 PREX2Q70Z35 1606 aa17.25■□□□□ 0.35
BRCA1-222ENST00000493919 CDC42BPAQ5VT25 1732 aa17.24■□□□□ 0.35
BRCA1-222ENST00000493919 PLCH2O75038 1416 aa17.24■□□□□ 0.35
BRCA1-222ENST00000493919 NEO1Q92859 1461 aa17.23■□□□□ 0.35
BRCA1-222ENST00000493919 CDC42BPBQ9Y5S2 1711 aa17.22■□□□□ 0.35
BRCA1-222ENST00000493919 KANK4Q5T7N3 995 aaPredicted RBP17.22■□□□□ 0.35
BRCA1-222ENST00000493919 PODXL2Q9NZ53 605 aa17.22■□□□□ 0.35
BRCA1-222ENST00000493919 NCOA2Q15596 1464 aa17.22■□□□□ 0.35
BRCA1-222ENST00000493919 ARAP3Q8WWN8 1544 aa17.21■□□□□ 0.35
BRCA1-222ENST00000493919 CCNB3Q8WWL7 1395 aa17.2■□□□□ 0.34
BRCA1-222ENST00000493919 COL17A1Q9UMD9 1497 aaPredicted RBP17.2■□□□□ 0.34
BRCA1-222ENST00000493919 ITSN2Q9NZM3 1697 aa17.2■□□□□ 0.34
BRCA1-222ENST00000493919 AKNAQ7Z591 1439 aa17.19■□□□□ 0.34
BRCA1-222ENST00000493919 ADGRL1O94910 1474 aa17.18■□□□□ 0.34
BRCA1-222ENST00000493919 GPATCH8Q9UKJ3 1502 aaKnown RBP17.18■□□□□ 0.34
BRCA1-222ENST00000493919 EFCAB2Q5VUJ9 269 aa17.17■□□□□ 0.34
BRCA1-222ENST00000493919 PHLDB1Q86UU1 1377 aa17.16■□□□□ 0.34
BRCA1-222ENST00000493919 ZNF777Q9ULD5 760 aaPredicted RBP17.15■□□□□ 0.34
BRCA1-222ENST00000493919 CFDP1Q9UEE9 299 aaPredicted RBP17.13■□□□□ 0.33
BRCA1-222ENST00000493919 SAMD9LQ8IVG5 1584 aa17.13■□□□□ 0.33
BRCA1-222ENST00000493919 DENND4BO75064 1496 aaPredicted RBP17.13■□□□□ 0.33
BRCA1-222ENST00000493919 SCAPERQ9BY12 1400 aa17.13■□□□□ 0.33
BRCA1-222ENST00000493919 FRMPD1Q5SYB0 1578 aa17.13■□□□□ 0.33
BRCA1-222ENST00000493919 ABCC1P33527 1531 aa17.12■□□□□ 0.33
BRCA1-222ENST00000493919 RAPGEF3O95398 923 aa17.12■□□□□ 0.33
BRCA1-222ENST00000493919 RICTORQ6R327 1708 aa17.11■□□□□ 0.33
BRCA1-222ENST00000493919 PPARGC1BQ86YN6 1023 aaKnown RBP17.1■□□□□ 0.33
BRCA1-222ENST00000493919 SYCP2Q9BX26 1530 aa17.1■□□□□ 0.33
BRCA1-222ENST00000493919 ACIN1Q9UKV3 1341 aaKnown RBP17.09■□□□□ 0.33
BRCA1-222ENST00000493919 POGZQ7Z3K3 1410 aa17.09■□□□□ 0.33
BRCA1-222ENST00000493919 MYOM3Q5VTT5 1437 aa17.08■□□□□ 0.32
BRCA1-222ENST00000493919 CAMSAP2Q08AD1 1489 aa17.06■□□□□ 0.32
BRCA1-222ENST00000493919 ZNF518AQ6AHZ1 1483 aa17.06■□□□□ 0.32
BRCA1-222ENST00000493919 ARHGEF12Q9NZN5 1544 aa17.06■□□□□ 0.32
BRCA1-222ENST00000493919 ZNF644Q9H582 1327 aaPredicted RBP17.06■□□□□ 0.32
BRCA1-222ENST00000493919 PLEKHH2Q8IVE3 1493 aa17.05■□□□□ 0.32
BRCA1-222ENST00000493919 ZMYM4Q5VZL5 1548 aa17.04■□□□□ 0.32
BRCA1-222ENST00000493919 TRAPPC8Q9Y2L5 1435 aa17.04■□□□□ 0.32
BRCA1-222ENST00000493919 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.32
BRCA1-222ENST00000493919 KDM5CP41229 1560 aa17.02■□□□□ 0.31
BRCA1-222ENST00000493919 ARHGEF40Q8TER5 1519 aa17.02■□□□□ 0.31
BRCA1-222ENST00000493919 AFAP1Q8N556 730 aa17.02■□□□□ 0.31
BRCA1-222ENST00000493919 MYT1LQ9UL68 1186 aa17.02■□□□□ 0.31
BRCA1-222ENST00000493919 RTN4Q9NQC3 1192 aaKnown RBP17.01■□□□□ 0.31
BRCA1-222ENST00000493919 MIA2Q96PC5 1412 aa17.01■□□□□ 0.31
BRCA1-222ENST00000493919 KIAA1107Q9UPP5 1409 aa17.01■□□□□ 0.31
BRCA1-222ENST00000493919 HECW2Q9P2P5 1572 aa17.01■□□□□ 0.31
BRCA1-222ENST00000493919 ZFYVE16Q7Z3T8 1539 aa17.01■□□□□ 0.31
BRCA1-222ENST00000493919 PTPN23Q9H3S7 1636 aa17■□□□□ 0.31
BRCA1-222ENST00000493919 FGD6Q6ZV73 1430 aa17■□□□□ 0.31
BRCA1-222ENST00000493919 YEATS2Q9ULM3 1422 aa16.98■□□□□ 0.31
BRCA1-222ENST00000493919 CCDC141Q6ZP82 1450 aa16.96■□□□□ 0.31
BRCA1-222ENST00000493919 MAGI2Q86UL8 1455 aa16.96■□□□□ 0.31
BRCA1-222ENST00000493919 MBD5Q9P267 1494 aa16.96■□□□□ 0.31
BRCA1-222ENST00000493919 PKNOX2Q96KN3 472 aa16.96■□□□□ 0.31
BRCA1-222ENST00000493919 KLHL34Q8N239 644 aa16.96■□□□□ 0.3
BRCA1-222ENST00000493919 ABCA6Q8N139 1617 aa16.95■□□□□ 0.3
BRCA1-222ENST00000493919 ARHGEF5Q12774 1597 aa16.94■□□□□ 0.3
BRCA1-222ENST00000493919 SPAG9O60271 1321 aaKnown RBP16.94■□□□□ 0.3
BRCA1-222ENST00000493919 INO80Q9ULG1 1556 aaPredicted RBP16.94■□□□□ 0.3
BRCA1-222ENST00000493919 KIDINS220Q9ULH0 1771 aa16.94■□□□□ 0.3
BRCA1-222ENST00000493919 MLH3Q9UHC1 1453 aa16.94■□□□□ 0.3
BRCA1-222ENST00000493919 ATP7AQ04656 1500 aa16.93■□□□□ 0.3
BRCA1-222ENST00000493919 DIP2CQ9Y2E4 1556 aa16.93■□□□□ 0.3
BRCA1-222ENST00000493919 TCOF1Q13428 1488 aaKnown RBP16.92■□□□□ 0.3
BRCA1-222ENST00000493919 FAM50AQ14320 339 aaKnown RBP16.92■□□□□ 0.3
BRCA1-222ENST00000493919 PLPPR3Q6T4P5 718 aa16.9■□□□□ 0.3
BRCA1-222ENST00000493919 ARID4BQ4LE39 1312 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-222ENST00000493919 CROCC2H7BZ55 1655 aa16.89■□□□□ 0.3
BRCA1-222ENST00000493919 DNMT1P26358 1616 aaKnown RBP16.89■□□□□ 0.29
BRCA1-222ENST00000493919 C9orf84Q5VXU9 1444 aa16.89■□□□□ 0.29
BRCA1-222ENST00000493919 TIMELESSQ9UNS1 1208 aa16.89■□□□□ 0.29
BRCA1-222ENST00000493919 SIGLEC1Q9BZZ2 1709 aa16.88■□□□□ 0.29
BRCA1-222ENST00000493919 ATP10AO60312 1499 aa16.88■□□□□ 0.29
BRCA1-222ENST00000493919 TSPY4P0CV99 314 aa16.87■□□□□ 0.29
BRCA1-222ENST00000493919 TSPY10P0CW01 314 aa16.87■□□□□ 0.29
BRCA1-222ENST00000493919 RSPH4AQ5TD94 716 aa16.87■□□□□ 0.29
BRCA1-222ENST00000493919 DAPK1P53355 1430 aa16.87■□□□□ 0.29
BRCA1-222ENST00000493919 ABCC5O15440 1437 aa16.85■□□□□ 0.29
BRCA1-222ENST00000493919 ANO8Q9HCE9 1232 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-222ENST00000493919 ADGBQ8N7X0 1667 aa16.85■□□□□ 0.29
BRCA1-222ENST00000493919 MAST1Q9Y2H9 1570 aa16.85■□□□□ 0.29
BRCA1-222ENST00000493919 HOMEZQ8IX15 550 aa16.84■□□□□ 0.29
BRCA1-222ENST00000493919 RTEL1-TNFRSF6BF6WH68 1400 aa16.84■□□□□ 0.29
BRCA1-222ENST00000493919 SHANK2Q9UPX8 1470 aa16.83■□□□□ 0.29
BRCA1-222ENST00000493919 REREQ9P2R6 1566 aa16.83■□□□□ 0.28
BRCA1-222ENST00000493919 NEFLP07196 543 aa16.83■□□□□ 0.28
BRCA1-222ENST00000493919 GTF3C3Q9Y5Q9 886 aa16.83■□□□□ 0.28
BRCA1-222ENST00000493919 BCORL1Q5H9F3 1711 aa16.82■□□□□ 0.28
BRCA1-222ENST00000493919 A2MP01023 1474 aa16.82■□□□□ 0.28
BRCA1-222ENST00000493919 RRBP1Q9P2E9 1410 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms