RNA–Protein interactions for RNA: ENST00000493864.1

TRA2B-216, Transcript of transformer 2 beta homolog, humanhuman

TSL 2

Gene TRA2B, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-216ENST00000493864 OCEL1Q9H607 264 aa11.68□□□□□ -0.54
TRA2B-216ENST00000493864 SEC24BO95487 1268 aa11.67□□□□□ -0.54
TRA2B-216ENST00000493864 PLCG2P16885 1265 aa11.67□□□□□ -0.54
TRA2B-216ENST00000493864 CADPS2Q86UW7 1296 aa11.67□□□□□ -0.54
TRA2B-216ENST00000493864 PDCD7Q8N8D1 485 aaKnown RBP11.67□□□□□ -0.54
TRA2B-216ENST00000493864 SLC39A7Q92504 469 aa11.66□□□□□ -0.54
TRA2B-216ENST00000493864 SMARCA4P51532 1647 aa11.66□□□□□ -0.54
TRA2B-216ENST00000493864 C7P10643 843 aa11.63□□□□□ -0.55
TRA2B-216ENST00000493864 METRNQ9UJH8 293 aa11.63□□□□□ -0.55
TRA2B-216ENST00000493864 COLQQ9Y215 455 aaPredicted RBP11.63□□□□□ -0.55
TRA2B-216ENST00000493864 G3V3G9 751 aa11.58□□□□□ -0.56
TRA2B-216ENST00000493864 WIZO95785 1651 aa11.58□□□□□ -0.56
TRA2B-216ENST00000493864 POTEFA5A3E0 1075 aa11.57□□□□□ -0.56
TRA2B-216ENST00000493864 MICALL2Q8IY33 904 aa11.57□□□□□ -0.56
TRA2B-216ENST00000493864 BOLA1Q9Y3E2 137 aa11.57□□□□□ -0.56
TRA2B-216ENST00000493864 WDR70Q9NW82 654 aa11.55□□□□□ -0.56
TRA2B-216ENST00000493864 ATAD2BQ9ULI0 1458 aa11.55□□□□□ -0.56
TRA2B-216ENST00000493864 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
TRA2B-216ENST00000493864 NCKAP5LQ9HCH0 1330 aa11.53□□□□□ -0.56
TRA2B-216ENST00000493864 SMARCA2P51531 1590 aa11.53□□□□□ -0.56
TRA2B-216ENST00000493864 NCAPD3P42695 1498 aa11.51□□□□□ -0.57
TRA2B-216ENST00000493864 PEG3Q9GZU2 1588 aa11.51□□□□□ -0.57
TRA2B-216ENST00000493864 PDE4AP27815 886 aa11.51□□□□□ -0.57
TRA2B-216ENST00000493864 LARP6Q9BRS8 491 aaKnown RBP11.51□□□□□ -0.57
TRA2B-216ENST00000493864 TMEM121BQ9BXQ6 578 aaPredicted RBP11.51□□□□□ -0.57
TRA2B-216ENST00000493864 CRISPLD2Q9H0B8 497 aa11.49□□□□□ -0.57
TRA2B-216ENST00000493864 HMGXB3Q12766 1538 aa11.49□□□□□ -0.57
TRA2B-216ENST00000493864 BAZ1BQ9UIG0 1483 aaKnown RBP11.46□□□□□ -0.57
TRA2B-216ENST00000493864 TMC2Q8TDI7 906 aa11.45□□□□□ -0.58
TRA2B-216ENST00000493864 DDX27Q96GQ7 796 aaKnown RBP11.45□□□□□ -0.58
TRA2B-216ENST00000493864 GPHNQ9NQX3 736 aaPredicted RBP11.44□□□□□ -0.58
TRA2B-216ENST00000493864 TOP2AP11388 1531 aaKnown RBP11.43□□□□□ -0.58
TRA2B-216ENST00000493864 MFSD10Q14728 455 aa11.42□□□□□ -0.58
TRA2B-216ENST00000493864 C3orf67Q6ZVT6 689 aa11.42□□□□□ -0.58
TRA2B-216ENST00000493864 BCANQ96GW7 911 aa11.42□□□□□ -0.58
TRA2B-216ENST00000493864 C2orf72A6NCS6 295 aa11.4□□□□□ -0.58
TRA2B-216ENST00000493864 E2F4Q16254 413 aa11.4□□□□□ -0.58
TRA2B-216ENST00000493864 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
TRA2B-216ENST00000493864 PPP1R15BQ5SWA1 713 aa11.39□□□□□ -0.59
TRA2B-216ENST00000493864 KCNV2Q8TDN2 545 aa11.39□□□□□ -0.59
TRA2B-216ENST00000493864 DSG2Q14126 1118 aa11.38□□□□□ -0.59
TRA2B-216ENST00000493864 TMEM92Q6UXU6 159 aa11.38□□□□□ -0.59
TRA2B-216ENST00000493864 NESP48681 1621 aa11.38□□□□□ -0.59
TRA2B-216ENST00000493864 KIF3CO14782 793 aa11.36□□□□□ -0.59
TRA2B-216ENST00000493864 NBR1Q14596 966 aa11.36□□□□□ -0.59
TRA2B-216ENST00000493864 CCDC88BA6NC98 1476 aa11.36□□□□□ -0.59
TRA2B-216ENST00000493864 POTEB2H3BUK9 544 aa11.35□□□□□ -0.59
TRA2B-216ENST00000493864 FOXK1P85037 733 aa11.35□□□□□ -0.59
TRA2B-216ENST00000493864 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.35□□□□□ -0.59
TRA2B-216ENST00000493864 POTEJP0CG39 1038 aa11.33□□□□□ -0.6
TRA2B-216ENST00000493864 PLPP6Q8IY26 295 aa11.33□□□□□ -0.6
TRA2B-216ENST00000493864 KIF21AQ7Z4S6 1674 aa11.3□□□□□ -0.6
TRA2B-216ENST00000493864 CAMK2BQ13554 666 aa11.3□□□□□ -0.6
TRA2B-216ENST00000493864 ARHGEF1Q92888 912 aaKnown RBP11.3□□□□□ -0.6
TRA2B-216ENST00000493864 ERCC6Q03468 1493 aa11.29□□□□□ -0.6
TRA2B-216ENST00000493864 LAMC3Q9Y6N6 1575 aa11.27□□□□□ -0.61
TRA2B-216ENST00000493864 SCUBE2Q9NQ36 999 aa11.26□□□□□ -0.61
TRA2B-216ENST00000493864 MAMSTRQ6ZN01 415 aa11.25□□□□□ -0.61
TRA2B-216ENST00000493864 EMILIN3Q9NT22 766 aa11.25□□□□□ -0.61
TRA2B-216ENST00000493864 DPYSL4O14531 572 aa11.22□□□□□ -0.61
TRA2B-216ENST00000493864 SLAIN1Q8ND83 568 aa11.22□□□□□ -0.61
TRA2B-216ENST00000493864 THOC2Q8NI27 1593 aaKnown RBP11.21□□□□□ -0.61
TRA2B-216ENST00000493864 UPF1Q92900 1129 aaKnown RBP eCLIP11.21□□□□□ -0.61
TRA2B-216ENST00000493864 ARIH1Q9Y4X5 557 aaPredicted RBP11.21□□□□□ -0.61
TRA2B-216ENST00000493864 CADPSQ9ULU8 1353 aa11.19□□□□□ -0.62
TRA2B-216ENST00000493864 PRDM2Q13029 1718 aa11.18□□□□□ -0.62
TRA2B-216ENST00000493864 SEMA3EO15041 775 aa11.17□□□□□ -0.62
TRA2B-216ENST00000493864 MAP3K9P80192 1104 aa11.17□□□□□ -0.62
TRA2B-216ENST00000493864 CFTRP13569 1480 aa11.17□□□□□ -0.62
TRA2B-216ENST00000493864 LHX8Q68G74 356 aa11.16□□□□□ -0.62
TRA2B-216ENST00000493864 OXER1Q8TDS5 423 aa11.16□□□□□ -0.62
TRA2B-216ENST00000493864 CUX2O14529 1486 aa11.15□□□□□ -0.62
TRA2B-216ENST00000493864 PDS5BQ9NTI5 1447 aa11.14□□□□□ -0.63
TRA2B-216ENST00000493864 SPDYE16A6NNV3 312 aaPredicted RBP11.12□□□□□ -0.63
TRA2B-216ENST00000493864 PDIA6Q15084 440 aa11.12□□□□□ -0.63
TRA2B-216ENST00000493864 PTCD2Q8WV60 388 aaKnown RBP11.12□□□□□ -0.63
TRA2B-216ENST00000493864 OTUD5Q96G74 571 aa11.12□□□□□ -0.63
TRA2B-216ENST00000493864 TBC1D12O60347 775 aa11.11□□□□□ -0.63
TRA2B-216ENST00000493864 SLC34A2O95436 690 aa11.11□□□□□ -0.63
TRA2B-216ENST00000493864 TESPA1A2RU30 521 aaPredicted RBP11.1□□□□□ -0.63
TRA2B-216ENST00000493864 FANCD2Q9BXW9 1451 aa11.09□□□□□ -0.63
TRA2B-216ENST00000493864 CEP164Q9UPV0 1460 aa11.09□□□□□ -0.63
TRA2B-216ENST00000493864 MRC2Q9UBG0 1479 aa11.08□□□□□ -0.64
TRA2B-216ENST00000493864 TULP1O00294 542 aaPredicted RBP11.08□□□□□ -0.64
TRA2B-216ENST00000493864 DOK7Q18PE1 504 aa11.08□□□□□ -0.64
TRA2B-216ENST00000493864 PCDHGA4Q9Y5G9 962 aa11.08□□□□□ -0.64
TRA2B-216ENST00000493864 EVI5O60447 810 aa11.07□□□□□ -0.64
TRA2B-216ENST00000493864 HOXB3P14651 431 aaPredicted RBP11.07□□□□□ -0.64
TRA2B-216ENST00000493864 MLLT3P42568 568 aaPredicted RBP11.07□□□□□ -0.64
TRA2B-216ENST00000493864 WDR62O43379 1518 aa11.06□□□□□ -0.64
TRA2B-216ENST00000493864 RIMBP2O15034 1052 aa11.05□□□□□ -0.64
TRA2B-216ENST00000493864 SMYD5Q6GMV2 418 aa11.05□□□□□ -0.64
TRA2B-216ENST00000493864 ZNF316A6NFI3 1004 aaPredicted RBP11.04□□□□□ -0.64
TRA2B-216ENST00000493864 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.04□□□□□ -0.64
TRA2B-216ENST00000493864 ZNF710Q8N1W2 664 aa11.04□□□□□ -0.64
TRA2B-216ENST00000493864 TPRNQ4KMQ1 711 aa11.03□□□□□ -0.64
TRA2B-216ENST00000493864 LMOD2Q6P5Q4 547 aa11.03□□□□□ -0.64
TRA2B-216ENST00000493864 URB2Q14146 1524 aaKnown RBP11.03□□□□□ -0.64
TRA2B-216ENST00000493864 ABCC8Q09428 1581 aa11.03□□□□□ -0.64
TRA2B-216ENST00000493864 GRXCR2A6NFK2 248 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms