RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 YEATS2Q9ULM3 1422 aa14.94□□□□□ -0.02
HDAC3-212ENST00000492407 MADDQ8WXG6 1647 aa14.94□□□□□ -0.02
HDAC3-212ENST00000492407 ATP10AO60312 1499 aa14.94□□□□□ -0.02
HDAC3-212ENST00000492407 CASKIN1Q8WXD9 1431 aa14.92□□□□□ -0.02
HDAC3-212ENST00000492407 EHMT2Q96KQ7 1210 aa14.92□□□□□ -0.02
HDAC3-212ENST00000492407 ZNF518AQ6AHZ1 1483 aa14.92□□□□□ -0.02
HDAC3-212ENST00000492407 PCF11O94913 1555 aaKnown RBP14.92□□□□□ -0.02
HDAC3-212ENST00000492407 KIF14Q15058 1648 aa14.92□□□□□ -0.02
HDAC3-212ENST00000492407 CCDC18Q5T9S5 1454 aa14.91□□□□□ -0.02
HDAC3-212ENST00000492407 C9orf84Q5VXU9 1444 aa14.91□□□□□ -0.02
HDAC3-212ENST00000492407 LMTK3Q96Q04 1460 aa14.9□□□□□ -0.02
HDAC3-212ENST00000492407 MYO5CQ9NQX4 1742 aa14.89□□□□□ -0.03
HDAC3-212ENST00000492407 FBXO41Q8TF61 875 aa14.88□□□□□ -0.03
HDAC3-212ENST00000492407 ARHGAP5Q13017 1502 aa14.87□□□□□ -0.03
HDAC3-212ENST00000492407 AFAP1Q8N556 730 aa14.87□□□□□ -0.03
HDAC3-212ENST00000492407 ARHGEF12Q9NZN5 1544 aa14.87□□□□□ -0.03
HDAC3-212ENST00000492407 KDM5CP41229 1560 aa14.86□□□□□ -0.03
HDAC3-212ENST00000492407 MLH3Q9UHC1 1453 aa14.86□□□□□ -0.03
HDAC3-212ENST00000492407 RIMS1Q86UR5 1692 aaKnown RBP14.86□□□□□ -0.03
HDAC3-212ENST00000492407 FYCO1Q9BQS8 1478 aa14.84□□□□□ -0.03
HDAC3-212ENST00000492407 MLECQ14165 292 aa14.84□□□□□ -0.03
HDAC3-212ENST00000492407 REREQ9P2R6 1566 aa14.84□□□□□ -0.03
HDAC3-212ENST00000492407 SIGLEC1Q9BZZ2 1709 aa14.82□□□□□ -0.04
HDAC3-212ENST00000492407 MYT1LQ9UL68 1186 aa14.8□□□□□ -0.04
HDAC3-212ENST00000492407 AGLP35573 1532 aa14.8□□□□□ -0.04
HDAC3-212ENST00000492407 ABCC1P33527 1531 aa14.79□□□□□ -0.04
HDAC3-212ENST00000492407 PREX2Q70Z35 1606 aa14.79□□□□□ -0.04
HDAC3-212ENST00000492407 LRRIQ1Q96JM4 1722 aa14.79□□□□□ -0.04
HDAC3-212ENST00000492407 FER1L4A9Z1Z3 1794 aa14.78□□□□□ -0.04
HDAC3-212ENST00000492407 TRAPPC8Q9Y2L5 1435 aa14.78□□□□□ -0.04
HDAC3-212ENST00000492407 HSPA2P54652 639 aa14.78□□□□□ -0.04
HDAC3-212ENST00000492407 DMRT2Q9Y5R5 561 aa14.78□□□□□ -0.04
HDAC3-212ENST00000492407 CDC42BPBQ9Y5S2 1711 aa14.78□□□□□ -0.04
HDAC3-212ENST00000492407 DIP2CQ9Y2E4 1556 aa14.77□□□□□ -0.04
HDAC3-212ENST00000492407 KIAA1107Q9UPP5 1409 aa14.76□□□□□ -0.05
HDAC3-212ENST00000492407 PLPPR3Q6T4P5 718 aa14.76□□□□□ -0.05
HDAC3-212ENST00000492407 ESF1Q9H501 851 aaKnown RBP14.75□□□□□ -0.05
HDAC3-212ENST00000492407 GPATCH8Q9UKJ3 1502 aaKnown RBP14.75□□□□□ -0.05
HDAC3-212ENST00000492407 PLEKHH2Q8IVE3 1493 aa14.75□□□□□ -0.05
HDAC3-212ENST00000492407 CNTLNQ9NXG0 1405 aa14.75□□□□□ -0.05
HDAC3-212ENST00000492407 CEBPAP49715 358 aaPredicted RBP14.74□□□□□ -0.05
HDAC3-212ENST00000492407 UHRF1BP1Q6BDS2 1440 aa14.73□□□□□ -0.05
HDAC3-212ENST00000492407 SPAG9O60271 1321 aaKnown RBP14.72□□□□□ -0.05
HDAC3-212ENST00000492407 ITSN2Q9NZM3 1697 aa14.72□□□□□ -0.05
HDAC3-212ENST00000492407 CFDP1Q9UEE9 299 aaPredicted RBP14.72□□□□□ -0.05
HDAC3-212ENST00000492407 ABCA6Q8N139 1617 aa14.72□□□□□ -0.05
HDAC3-212ENST00000492407 CCNB3Q8WWL7 1395 aa14.72□□□□□ -0.05
HDAC3-212ENST00000492407 PREX1Q8TCU6 1659 aa14.71□□□□□ -0.05
HDAC3-212ENST00000492407 ZNF777Q9ULD5 760 aaPredicted RBP14.71□□□□□ -0.05
HDAC3-212ENST00000492407 CDC42BPAQ5VT25 1732 aa14.7□□□□□ -0.06
HDAC3-212ENST00000492407 CERKQ8TCT0 537 aa14.7□□□□□ -0.06
HDAC3-212ENST00000492407 PPP6R1Q9UPN7 881 aa14.7□□□□□ -0.06
HDAC3-212ENST00000492407 MTUS2Q5JR59 1369 aa14.7□□□□□ -0.06
HDAC3-212ENST00000492407 SETD1BQ9UPS6 1966 aaKnown RBP14.69□□□□□ -0.06
HDAC3-212ENST00000492407 SAMD9LQ8IVG5 1584 aa14.69□□□□□ -0.06
HDAC3-212ENST00000492407 HNRNPMP52272 730 aaKnown RBP eCLIP14.69□□□□□ -0.06
HDAC3-212ENST00000492407 KIDINS220Q9ULH0 1771 aa14.69□□□□□ -0.06
HDAC3-212ENST00000492407 NPATQ14207 1427 aa14.67□□□□□ -0.06
HDAC3-212ENST00000492407 SYCP2Q9BX26 1530 aa14.66□□□□□ -0.06
HDAC3-212ENST00000492407 PTPRTO14522 1441 aa14.66□□□□□ -0.06
HDAC3-212ENST00000492407 CEP162Q5TB80 1403 aa14.65□□□□□ -0.06
HDAC3-212ENST00000492407 RSPH4AQ5TD94 716 aa14.64□□□□□ -0.07
HDAC3-212ENST00000492407 RTEL1-TNFRSF6BF6WH68 1400 aa14.64□□□□□ -0.07
HDAC3-212ENST00000492407 A2MP01023 1474 aa14.63□□□□□ -0.07
HDAC3-212ENST00000492407 ZMYM3Q14202 1370 aa14.63□□□□□ -0.07
HDAC3-212ENST00000492407 ATP7AQ04656 1500 aa14.63□□□□□ -0.07
HDAC3-212ENST00000492407 EHBP1L1Q8N3D4 1523 aa14.62□□□□□ -0.07
HDAC3-212ENST00000492407 C3P01024 1663 aa14.62□□□□□ -0.07
HDAC3-212ENST00000492407 PLXNC1O60486 1568 aa14.61□□□□□ -0.07
HDAC3-212ENST00000492407 INO80Q9ULG1 1556 aaPredicted RBP14.61□□□□□ -0.07
HDAC3-212ENST00000492407 MBD5Q9P267 1494 aa14.61□□□□□ -0.07
HDAC3-212ENST00000492407 MROH2AA6NES4 1674 aa14.61□□□□□ -0.07
HDAC3-212ENST00000492407 STRCQ7RTU9 1775 aa14.6□□□□□ -0.07
HDAC3-212ENST00000492407 NCOA1Q15788 1441 aa14.58□□□□□ -0.07
HDAC3-212ENST00000492407 TIAM1Q13009 1591 aa14.58□□□□□ -0.08
HDAC3-212ENST00000492407 DHX29Q7Z478 1369 aaKnown RBP14.58□□□□□ -0.08
HDAC3-212ENST00000492407 ZNF644Q9H582 1327 aaPredicted RBP14.57□□□□□ -0.08
HDAC3-212ENST00000492407 GGT6Q6P531 493 aa14.56□□□□□ -0.08
HDAC3-212ENST00000492407 PKD2Q13563 968 aa14.55□□□□□ -0.08
HDAC3-212ENST00000492407 PTPRKQ15262 1439 aa14.55□□□□□ -0.08
HDAC3-212ENST00000492407 IQSEC2Q5JU85 1478 aa14.55□□□□□ -0.08
HDAC3-212ENST00000492407 ADGBQ8N7X0 1667 aa14.55□□□□□ -0.08
HDAC3-212ENST00000492407 SUPT6HQ7KZ85 1726 aaKnown RBP14.53□□□□□ -0.08
HDAC3-212ENST00000492407 FAM135AQ9P2D6 1515 aa14.53□□□□□ -0.08
HDAC3-212ENST00000492407 PLA2R1Q13018 1463 aa14.53□□□□□ -0.08
HDAC3-212ENST00000492407 NCOA2Q15596 1464 aa14.53□□□□□ -0.08
HDAC3-212ENST00000492407 CCDC141Q6ZP82 1450 aa14.53□□□□□ -0.08
HDAC3-212ENST00000492407 TSPY4P0CV99 314 aa14.52□□□□□ -0.09
HDAC3-212ENST00000492407 TSPY10P0CW01 314 aa14.52□□□□□ -0.09
HDAC3-212ENST00000492407 CAMSAP1Q5T5Y3 1602 aa14.51□□□□□ -0.09
HDAC3-212ENST00000492407 VPS8Q8N3P4 1428 aa14.49□□□□□ -0.09
HDAC3-212ENST00000492407 LTBP4Q8N2S1 1624 aa14.49□□□□□ -0.09
HDAC3-212ENST00000492407 MAP3K1Q13233 1512 aa14.49□□□□□ -0.09
HDAC3-212ENST00000492407 CAMSAP2Q08AD1 1489 aa14.49□□□□□ -0.09
HDAC3-212ENST00000492407 CLTCQ00610 1675 aaKnown RBP14.49□□□□□ -0.09
HDAC3-212ENST00000492407 KIF3BO15066 747 aa14.48□□□□□ -0.09
HDAC3-212ENST00000492407 TCOF1Q13428 1488 aaKnown RBP14.48□□□□□ -0.09
HDAC3-212ENST00000492407 ARHGEF5Q12774 1597 aa14.47□□□□□ -0.09
HDAC3-212ENST00000492407 ZNF142P52746 1687 aaPredicted RBP14.47□□□□□ -0.09
HDAC3-212ENST00000492407 LRRC9Q6ZRR7 1453 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms