RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
HDAC3-212ENST00000492407 CCDC180Q9P1Z9 1646 aa20.49■□□□□ 0.87
HDAC3-212ENST00000492407 ABCC9O60706 1549 aa20.44■□□□□ 0.86
HDAC3-212ENST00000492407 RB1CC1Q8TDY2 1594 aa19.54■□□□□ 0.72
HDAC3-212ENST00000492407 NACADO15069 1562 aa19.44■□□□□ 0.7
HDAC3-212ENST00000492407 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
HDAC3-212ENST00000492407 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
HDAC3-212ENST00000492407 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
HDAC3-212ENST00000492407 PABPN1Q86U42 306 aaKnown RBP eCLIP19.05■□□□□ 0.64
HDAC3-212ENST00000492407 DCAF1Q9Y4B6 1507 aa18.96■□□□□ 0.63
HDAC3-212ENST00000492407 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
HDAC3-212ENST00000492407 UNC13AQ9UPW8 1703 aa18.92■□□□□ 0.62
HDAC3-212ENST00000492407 BICRAQ9NZM4 1560 aa18.91■□□□□ 0.62
HDAC3-212ENST00000492407 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
HDAC3-212ENST00000492407 SCRIBQ14160 1630 aa18.57■□□□□ 0.56
HDAC3-212ENST00000492407 CC2D2AQ9P2K1 1620 aa18.48■□□□□ 0.55
HDAC3-212ENST00000492407 CECR2Q9BXF3 1484 aa18.47■□□□□ 0.55
HDAC3-212ENST00000492407 EIF4G1Q04637 1599 aaKnown RBP18.47■□□□□ 0.55
HDAC3-212ENST00000492407 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
HDAC3-212ENST00000492407 ATAD2BQ9ULI0 1458 aa17.86■□□□□ 0.45
HDAC3-212ENST00000492407 SMARCA2P51531 1590 aa17.82■□□□□ 0.44
HDAC3-212ENST00000492407 HMGXB3Q12766 1538 aa17.79■□□□□ 0.44
HDAC3-212ENST00000492407 SMARCA4P51532 1647 aa17.78■□□□□ 0.44
HDAC3-212ENST00000492407 BAZ1AQ9NRL2 1556 aaPredicted RBP17.76■□□□□ 0.43
HDAC3-212ENST00000492407 DNAJC5Q9H3Z4 198 aa17.75■□□□□ 0.43
HDAC3-212ENST00000492407 CUX2O14529 1486 aa17.74■□□□□ 0.43
HDAC3-212ENST00000492407 ERCC6Q03468 1493 aa17.69■□□□□ 0.42
HDAC3-212ENST00000492407 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
HDAC3-212ENST00000492407 BAZ1BQ9UIG0 1483 aaKnown RBP17.67■□□□□ 0.42
HDAC3-212ENST00000492407 MROH2BQ7Z745 1585 aa17.56■□□□□ 0.4
HDAC3-212ENST00000492407 NESP48681 1621 aa17.54■□□□□ 0.4
HDAC3-212ENST00000492407 LAMC3Q9Y6N6 1575 aa17.52■□□□□ 0.39
HDAC3-212ENST00000492407 PDS5BQ9NTI5 1447 aa17.47■□□□□ 0.39
HDAC3-212ENST00000492407 CADPSQ9ULU8 1353 aa17.41■□□□□ 0.38
HDAC3-212ENST00000492407 THOC2Q8NI27 1593 aaKnown RBP17.38■□□□□ 0.37
HDAC3-212ENST00000492407 WIZO95785 1651 aa17.29■□□□□ 0.36
HDAC3-212ENST00000492407 KIF21AQ7Z4S6 1674 aa17.26■□□□□ 0.35
HDAC3-212ENST00000492407 MRC2Q9UBG0 1479 aa17.25■□□□□ 0.35
HDAC3-212ENST00000492407 RSF1Q96T23 1441 aaPredicted RBP17.24■□□□□ 0.35
HDAC3-212ENST00000492407 WDR62O43379 1518 aa17.21■□□□□ 0.34
HDAC3-212ENST00000492407 CFTRP13569 1480 aa17.19■□□□□ 0.34
HDAC3-212ENST00000492407 CEP164Q9UPV0 1460 aa17.18■□□□□ 0.34
HDAC3-212ENST00000492407 FANCD2Q9BXW9 1451 aa17.16■□□□□ 0.34
HDAC3-212ENST00000492407 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
HDAC3-212ENST00000492407 URB2Q14146 1524 aaKnown RBP16.99■□□□□ 0.31
HDAC3-212ENST00000492407 CCDC88BA6NC98 1476 aa16.97■□□□□ 0.31
HDAC3-212ENST00000492407 OSCARQ8IYS5 282 aa16.95■□□□□ 0.3
HDAC3-212ENST00000492407 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
HDAC3-212ENST00000492407 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
HDAC3-212ENST00000492407 PRDM2Q13029 1718 aa16.88■□□□□ 0.29
HDAC3-212ENST00000492407 TRIM41Q8WV44 630 aa16.84■□□□□ 0.29
HDAC3-212ENST00000492407 TOPBP1Q92547 1522 aa16.81■□□□□ 0.28
HDAC3-212ENST00000492407 ZNF608Q9ULD9 1512 aaPredicted RBP16.76■□□□□ 0.27
HDAC3-212ENST00000492407 DNMBPQ6XZF7 1577 aa16.76■□□□□ 0.27
HDAC3-212ENST00000492407 EIF4G3O43432 1585 aaKnown RBP16.65■□□□□ 0.26
HDAC3-212ENST00000492407 TARBP1Q13395 1621 aaKnown RBP16.65■□□□□ 0.26
HDAC3-212ENST00000492407 POLA1P09884 1462 aaPredicted RBP16.65■□□□□ 0.26
HDAC3-212ENST00000492407 AQRO60306 1485 aaKnown RBP eCLIP16.63■□□□□ 0.258e-7■■■■□ 24.3
HDAC3-212ENST00000492407 SOGA1O94964 1423 aa16.61■□□□□ 0.25
HDAC3-212ENST00000492407 RIMBP3CA6NJZ7 1639 aa16.59■□□□□ 0.25
HDAC3-212ENST00000492407 RIMBP3BA6NNM3 1639 aa16.59■□□□□ 0.25
HDAC3-212ENST00000492407 RIMBP3Q9UFD9 1639 aa16.59■□□□□ 0.25
HDAC3-212ENST00000492407 ARHGEF11O15085 1522 aa16.59■□□□□ 0.25
HDAC3-212ENST00000492407 WDR97A6NE52 1622 aa16.59■□□□□ 0.25
HDAC3-212ENST00000492407 RAD54L2Q9Y4B4 1467 aa16.54■□□□□ 0.24
HDAC3-212ENST00000492407 TDRD9Q8NDG6 1382 aaKnown RBP16.53■□□□□ 0.24
HDAC3-212ENST00000492407 FBLN2P98095 1184 aa16.52■□□□□ 0.24
HDAC3-212ENST00000492407 FGD5Q6ZNL6 1462 aa16.52■□□□□ 0.23
HDAC3-212ENST00000492407 CUX1P39880 1505 aa16.5■□□□□ 0.23
HDAC3-212ENST00000492407 MAGI1Q96QZ7 1491 aaPredicted RBP16.48■□□□□ 0.23
HDAC3-212ENST00000492407 CYB5RLQ6IPT4 315 aa16.48■□□□□ 0.23
HDAC3-212ENST00000492407 CHD1O14646 1710 aa16.47■□□□□ 0.23
HDAC3-212ENST00000492407 GRIN2BQ13224 1484 aa16.47■□□□□ 0.23
HDAC3-212ENST00000492407 CHMP7Q8WUX9 453 aaPredicted RBP16.46■□□□□ 0.23
HDAC3-212ENST00000492407 SNAPC4Q5SXM2 1469 aa16.45■□□□□ 0.22
HDAC3-212ENST00000492407 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
HDAC3-212ENST00000492407 ARAP1Q96P48 1450 aa16.41■□□□□ 0.22
HDAC3-212ENST00000492407 SUPT5HO00267 1087 aaKnown RBP16.4■□□□□ 0.22
HDAC3-212ENST00000492407 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
HDAC3-212ENST00000492407 SYNJ1O43426 1573 aa16.39■□□□□ 0.21
HDAC3-212ENST00000492407 GAPVD1Q14C86 1478 aa16.39■□□□□ 0.21
HDAC3-212ENST00000492407 CLASP1Q7Z460 1538 aa16.39■□□□□ 0.21
HDAC3-212ENST00000492407 WRNQ14191 1432 aaPredicted RBP eCLIP16.34■□□□□ 0.21
HDAC3-212ENST00000492407 ABCA5Q8WWZ7 1642 aa16.3■□□□□ 0.2
HDAC3-212ENST00000492407 TRHP20396 242 aaPredicted RBP16.28■□□□□ 0.2
HDAC3-212ENST00000492407 PBRM1Q86U86 1689 aa16.27■□□□□ 0.19
HDAC3-212ENST00000492407 TOP2BQ02880 1626 aa16.26■□□□□ 0.19
HDAC3-212ENST00000492407 BIVM-ERCC5R4GMW8 1640 aa16.23■□□□□ 0.19
HDAC3-212ENST00000492407 GRIN2AQ12879 1464 aa16.22■□□□□ 0.19
HDAC3-212ENST00000492407 FHAD1B1AJZ9 1412 aa16.22■□□□□ 0.19
HDAC3-212ENST00000492407 NUP160Q12769 1436 aa16.2■□□□□ 0.18
HDAC3-212ENST00000492407 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
HDAC3-212ENST00000492407 ADAMTS12P58397 1594 aa16.17■□□□□ 0.18
HDAC3-212ENST00000492407 CEP170Q5SW79 1584 aa16.11■□□□□ 0.17
HDAC3-212ENST00000492407 SHROOM2Q13796 1616 aa16.09■□□□□ 0.17
HDAC3-212ENST00000492407 JPH4Q96JJ6 628 aa16.06■□□□□ 0.16
HDAC3-212ENST00000492407 ERCC6L2Q5T890 1561 aa16.04■□□□□ 0.16
HDAC3-212ENST00000492407 PRG4Q92954 1404 aaPredicted RBP16.02■□□□□ 0.16
HDAC3-212ENST00000492407 IGF1RP08069 1367 aa16■□□□□ 0.15
HDAC3-212ENST00000492407 KIF27Q86VH2 1401 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms