RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 FAM69CQ0P6D2 419 aa34.27■■■■□ 3.08
USF3-203ENST00000491165 MAP3K4Q9Y6R4 1608 aa34.26■■■■□ 3.08
USF3-203ENST00000491165 PLCH2O75038 1416 aa34.26■■■■□ 3.08
USF3-203ENST00000491165 ZNF644Q9H582 1327 aaPredicted RBP34.25■■■■□ 3.07
USF3-203ENST00000491165 CFDP1Q9UEE9 299 aaPredicted RBP34.25■■■■□ 3.07
USF3-203ENST00000491165 MIA2Q96PC5 1412 aa34.25■■■■□ 3.07
USF3-203ENST00000491165 ARHGAP5Q13017 1502 aa34.23■■■■□ 3.07
USF3-203ENST00000491165 CD109Q6YHK3 1445 aa34.22■■■■□ 3.07
USF3-203ENST00000491165 ZNF777Q9ULD5 760 aaPredicted RBP34.19■■■■□ 3.06
USF3-203ENST00000491165 SAMD9LQ8IVG5 1584 aa34.18■■■■□ 3.06
USF3-203ENST00000491165 FAM50AQ14320 339 aaKnown RBP34.18■■■■□ 3.06
USF3-203ENST00000491165 TCOF1Q13428 1488 aaKnown RBP34.18■■■■□ 3.06
USF3-203ENST00000491165 TSPOAP1O95153 1857 aa34.17■■■■□ 3.06
USF3-203ENST00000491165 CAMSAP2Q08AD1 1489 aa34.16■■■■□ 3.06
USF3-203ENST00000491165 ARAP3Q8WWN8 1544 aa34.16■■■■□ 3.06
USF3-203ENST00000491165 PPRC1Q5VV67 1664 aaKnown RBP34.14■■■■□ 3.05
USF3-203ENST00000491165 CCER1Q8TC90 406 aaPredicted RBP34.13■■■■□ 3.05
USF3-203ENST00000491165 FANCAO15360 1455 aa34.12■■■■□ 3.05
USF3-203ENST00000491165 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.07■■■■□ 3.04
USF3-203ENST00000491165 EFCAB2Q5VUJ9 269 aa34.07■■■■□ 3.04
USF3-203ENST00000491165 ARHGEF12Q9NZN5 1544 aa34.05■■■■□ 3.04
USF3-203ENST00000491165 ITGAEP38570 1179 aa34.04■■■■□ 3.04
USF3-203ENST00000491165 SYCP2Q9BX26 1530 aa34.04■■■■□ 3.04
USF3-203ENST00000491165 ABCC1P33527 1531 aa34.03■■■■□ 3.04
USF3-203ENST00000491165 TRHP20396 242 aaPredicted RBP34.01■■■■□ 3.04
USF3-203ENST00000491165 HNRNPMP52272 730 aaKnown RBP eCLIP34.01■■■■□ 3.03
USF3-203ENST00000491165 MBD5Q9P267 1494 aa34.01■■■■□ 3.03
USF3-203ENST00000491165 PTPRKQ15262 1439 aa34■■■■□ 3.03
USF3-203ENST00000491165 DNMT1P26358 1616 aaKnown RBP33.99■■■■□ 3.03
USF3-203ENST00000491165 AKNAQ7Z591 1439 aa33.98■■■■□ 3.03
USF3-203ENST00000491165 CFAP74Q9C0B2 1584 aa33.97■■■■□ 3.03
USF3-203ENST00000491165 ADGRL1O94910 1474 aa33.96■■■■□ 3.03
USF3-203ENST00000491165 ABCC5O15440 1437 aa33.95■■■■□ 3.03
USF3-203ENST00000491165 DAPK1P53355 1430 aa33.94■■■■□ 3.02
USF3-203ENST00000491165 KIAA1107Q9UPP5 1409 aa33.94■■■■□ 3.02
USF3-203ENST00000491165 NEO1Q92859 1461 aa33.93■■■■□ 3.02
USF3-203ENST00000491165 ARHGEF5Q12774 1597 aa33.92■■■■□ 3.02
USF3-203ENST00000491165 CROCC2H7BZ55 1655 aa33.92■■■■□ 3.02
USF3-203ENST00000491165 PLEKHH2Q8IVE3 1493 aa33.91■■■■□ 3.02
USF3-203ENST00000491165 TRAPPC8Q9Y2L5 1435 aa33.91■■■■□ 3.02
USF3-203ENST00000491165 SCAPERQ9BY12 1400 aa33.9■■■■□ 3.02
USF3-203ENST00000491165 TEX14Q8IWB6 1497 aa33.88■■■■□ 3.01
USF3-203ENST00000491165 CCDC141Q6ZP82 1450 aa33.86■■■■□ 3.01
USF3-203ENST00000491165 CHIC2Q9UKJ5 165 aa33.85■■■■□ 3.01
USF3-203ENST00000491165 AFAP1Q8N556 730 aa33.83■■■■□ 3.01
USF3-203ENST00000491165 RICTORQ6R327 1708 aa33.78■■■■□ 3
USF3-203ENST00000491165 COL17A1Q9UMD9 1497 aaPredicted RBP33.77■■■■□ 3
USF3-203ENST00000491165 RAPGEF3O95398 923 aa33.77■■■■□ 3
USF3-203ENST00000491165 POGZQ7Z3K3 1410 aa33.77■■■■□ 3
USF3-203ENST00000491165 C9orf84Q5VXU9 1444 aa33.76■■■■□ 3
USF3-203ENST00000491165 SHANK2Q9UPX8 1470 aa33.76■■■□□ 2.99
USF3-203ENST00000491165 FRMPD1Q5SYB0 1578 aa33.75■■■□□ 2.99
USF3-203ENST00000491165 RSPH4AQ5TD94 716 aa33.74■■■□□ 2.99
USF3-203ENST00000491165 DENND4BO75064 1496 aaPredicted RBP33.74■■■□□ 2.99
USF3-203ENST00000491165 ZNF518AQ6AHZ1 1483 aa33.73■■■□□ 2.99
USF3-203ENST00000491165 ADGBQ8N7X0 1667 aa33.73■■■□□ 2.99
USF3-203ENST00000491165 KDM5CP41229 1560 aa33.72■■■□□ 2.99
USF3-203ENST00000491165 TSPY4P0CV99 314 aa33.71■■■□□ 2.99
USF3-203ENST00000491165 TSPY10P0CW01 314 aa33.71■■■□□ 2.99
USF3-203ENST00000491165 MAST1Q9Y2H9 1570 aa33.71■■■□□ 2.99
USF3-203ENST00000491165 RRP7BPQ9NSQ0 103 aa33.7■■■□□ 2.98
USF3-203ENST00000491165 ADGRL2O95490 1459 aa33.69■■■□□ 2.98
USF3-203ENST00000491165 ZFYVE16Q7Z3T8 1539 aa33.69■■■□□ 2.98
USF3-203ENST00000491165 NCOA1Q15788 1441 aa33.68■■■□□ 2.98
USF3-203ENST00000491165 INO80Q9ULG1 1556 aaPredicted RBP33.67■■■□□ 2.98
USF3-203ENST00000491165 KIDINS220Q9ULH0 1771 aa33.66■■■□□ 2.98
USF3-203ENST00000491165 ROCK1Q13464 1354 aa33.64■■■□□ 2.98
USF3-203ENST00000491165 SPAG9O60271 1321 aaKnown RBP33.64■■■□□ 2.98
USF3-203ENST00000491165 NAIPQ13075 1403 aa33.64■■■□□ 2.98
USF3-203ENST00000491165 HFM1A2PYH4 1435 aa33.63■■■□□ 2.97
USF3-203ENST00000491165 ATP7AQ04656 1500 aa33.63■■■□□ 2.97
USF3-203ENST00000491165 GCC2Q8IWJ2 1684 aa33.61■■■□□ 2.97
USF3-203ENST00000491165 HECW2Q9P2P5 1572 aa33.61■■■□□ 2.97
USF3-203ENST00000491165 KDM6BO15054 1643 aa33.6■■■□□ 2.97
USF3-203ENST00000491165 PLXNC1O60486 1568 aa33.6■■■□□ 2.97
USF3-203ENST00000491165 ANKRD30AQ9BXX3 1397 aa33.59■■■□□ 2.97
USF3-203ENST00000491165 RTEL1-TNFRSF6BF6WH68 1400 aa33.58■■■□□ 2.97
USF3-203ENST00000491165 SCAF1Q9H7N4 1312 aaKnown RBP33.57■■■□□ 2.97
USF3-203ENST00000491165 MLH3Q9UHC1 1453 aa33.57■■■□□ 2.96
USF3-203ENST00000491165 ZMYM4Q5VZL5 1548 aa33.56■■■□□ 2.96
USF3-203ENST00000491165 KIF15Q9NS87 1388 aa33.55■■■□□ 2.96
USF3-203ENST00000491165 SETD5Q9C0A6 1442 aa33.55■■■□□ 2.96
USF3-203ENST00000491165 RAB3GAP2Q9H2M9 1393 aa33.53■■■□□ 2.96
USF3-203ENST00000491165 ABCA6Q8N139 1617 aa33.53■■■□□ 2.96
USF3-203ENST00000491165 MYT1LQ9UL68 1186 aa33.52■■■□□ 2.96
USF3-203ENST00000491165 DIEXFQ68CQ4 756 aaKnown RBP33.52■■■□□ 2.96
USF3-203ENST00000491165 YEATS2Q9ULM3 1422 aa33.52■■■□□ 2.96
USF3-203ENST00000491165 DIP2CQ9Y2E4 1556 aa33.47■■■□□ 2.95
USF3-203ENST00000491165 ANKRD50Q9ULJ7 1429 aa33.45■■■□□ 2.95
USF3-203ENST00000491165 DUOX2Q9NRD8 1548 aa33.43■■■□□ 2.94
USF3-203ENST00000491165 MAGI2Q86UL8 1455 aa33.4■■■□□ 2.94
USF3-203ENST00000491165 A2MP01023 1474 aa33.35■■■□□ 2.93
USF3-203ENST00000491165 ARHGEF40Q8TER5 1519 aa33.35■■■□□ 2.93
USF3-203ENST00000491165 SIGLEC1Q9BZZ2 1709 aa33.35■■■□□ 2.93
USF3-203ENST00000491165 DHX29Q7Z478 1369 aaKnown RBP33.34■■■□□ 2.93
USF3-203ENST00000491165 ERBINQ96RT1 1412 aa33.34■■■□□ 2.93
USF3-203ENST00000491165 ACIN1Q9UKV3 1341 aaKnown RBP33.31■■■□□ 2.92
USF3-203ENST00000491165 ZNF316A6NFI3 1004 aaPredicted RBP33.28■■■□□ 2.92
USF3-203ENST00000491165 ATP10AO60312 1499 aa33.28■■■□□ 2.92
USF3-203ENST00000491165 EIF2AK4Q9P2K8 1649 aaKnown RBP33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms