RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 CCNB3Q8WWL7 1395 aa16.99■□□□□ 0.31
VPS13D-210ENST00000489961 CDC42BPBQ9Y5S2 1711 aa16.99■□□□□ 0.31
VPS13D-210ENST00000489961 NCOA2Q15596 1464 aa16.98■□□□□ 0.31
VPS13D-210ENST00000489961 ITSN2Q9NZM3 1697 aa16.97■□□□□ 0.31
VPS13D-210ENST00000489961 EFCAB2Q5VUJ9 269 aa16.97■□□□□ 0.31
VPS13D-210ENST00000489961 GPATCH8Q9UKJ3 1502 aaKnown RBP16.96■□□□□ 0.3
VPS13D-210ENST00000489961 AKNAQ7Z591 1439 aa16.96■□□□□ 0.3
VPS13D-210ENST00000489961 CFDP1Q9UEE9 299 aaPredicted RBP16.91■□□□□ 0.3
VPS13D-210ENST00000489961 ADGRL1O94910 1474 aa16.91■□□□□ 0.3
VPS13D-210ENST00000489961 COL17A1Q9UMD9 1497 aaPredicted RBP16.91■□□□□ 0.3
VPS13D-210ENST00000489961 DENND4BO75064 1496 aaPredicted RBP16.89■□□□□ 0.29
VPS13D-210ENST00000489961 ZNF777Q9ULD5 760 aaPredicted RBP16.89■□□□□ 0.29
VPS13D-210ENST00000489961 SCAPERQ9BY12 1400 aa16.87■□□□□ 0.29
VPS13D-210ENST00000489961 ABCC1P33527 1531 aa16.87■□□□□ 0.29
VPS13D-210ENST00000489961 SAMD9LQ8IVG5 1584 aa16.87■□□□□ 0.29
VPS13D-210ENST00000489961 MYOM3Q5VTT5 1437 aa16.87■□□□□ 0.29
VPS13D-210ENST00000489961 PLEKHH2Q8IVE3 1493 aa16.86■□□□□ 0.29
VPS13D-210ENST00000489961 RICTORQ6R327 1708 aa16.86■□□□□ 0.29
VPS13D-210ENST00000489961 RAPGEF3O95398 923 aa16.84■□□□□ 0.29
VPS13D-210ENST00000489961 FRMPD1Q5SYB0 1578 aa16.84■□□□□ 0.29
VPS13D-210ENST00000489961 POGZQ7Z3K3 1410 aa16.83■□□□□ 0.28
VPS13D-210ENST00000489961 MIA2Q96PC5 1412 aa16.83■□□□□ 0.28
VPS13D-210ENST00000489961 SYCP2Q9BX26 1530 aa16.82■□□□□ 0.28
VPS13D-210ENST00000489961 ZNF518AQ6AHZ1 1483 aa16.82■□□□□ 0.28
VPS13D-210ENST00000489961 KIAA1107Q9UPP5 1409 aa16.82■□□□□ 0.28
VPS13D-210ENST00000489961 CAMSAP2Q08AD1 1489 aa16.81■□□□□ 0.28
VPS13D-210ENST00000489961 PPARGC1BQ86YN6 1023 aaKnown RBP16.81■□□□□ 0.28
VPS13D-210ENST00000489961 ARHGEF12Q9NZN5 1544 aa16.8■□□□□ 0.28
VPS13D-210ENST00000489961 ZNF644Q9H582 1327 aaPredicted RBP16.8■□□□□ 0.28
VPS13D-210ENST00000489961 ZMYM4Q5VZL5 1548 aa16.8■□□□□ 0.28
VPS13D-210ENST00000489961 HNRNPMP52272 730 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS13D-210ENST00000489961 FGD6Q6ZV73 1430 aa16.78■□□□□ 0.28
VPS13D-210ENST00000489961 TRAPPC8Q9Y2L5 1435 aa16.78■□□□□ 0.28
VPS13D-210ENST00000489961 PTPN23Q9H3S7 1636 aa16.78■□□□□ 0.28
VPS13D-210ENST00000489961 KDM5CP41229 1560 aa16.77■□□□□ 0.28
VPS13D-210ENST00000489961 AFAP1Q8N556 730 aa16.77■□□□□ 0.28
VPS13D-210ENST00000489961 MAGI2Q86UL8 1455 aa16.76■□□□□ 0.27
VPS13D-210ENST00000489961 RSPH4AQ5TD94 716 aa16.75■□□□□ 0.27
VPS13D-210ENST00000489961 MYT1LQ9UL68 1186 aa16.75■□□□□ 0.27
VPS13D-210ENST00000489961 HECW2Q9P2P5 1572 aa16.75■□□□□ 0.27
VPS13D-210ENST00000489961 ZFYVE16Q7Z3T8 1539 aa16.75■□□□□ 0.27
VPS13D-210ENST00000489961 MBD5Q9P267 1494 aa16.74■□□□□ 0.27
VPS13D-210ENST00000489961 ARHGEF5Q12774 1597 aa16.74■□□□□ 0.27
VPS13D-210ENST00000489961 TCOF1Q13428 1488 aaKnown RBP16.73■□□□□ 0.27
VPS13D-210ENST00000489961 ARHGEF40Q8TER5 1519 aa16.73■□□□□ 0.27
VPS13D-210ENST00000489961 CCDC141Q6ZP82 1450 aa16.73■□□□□ 0.27
VPS13D-210ENST00000489961 MLH3Q9UHC1 1453 aa16.73■□□□□ 0.27
VPS13D-210ENST00000489961 SPAG9O60271 1321 aaKnown RBP16.71■□□□□ 0.27
VPS13D-210ENST00000489961 YEATS2Q9ULM3 1422 aa16.7■□□□□ 0.26
VPS13D-210ENST00000489961 KIDINS220Q9ULH0 1771 aa16.69■□□□□ 0.26
VPS13D-210ENST00000489961 INO80Q9ULG1 1556 aaPredicted RBP16.69■□□□□ 0.26
VPS13D-210ENST00000489961 FAM50AQ14320 339 aaKnown RBP16.69■□□□□ 0.26
VPS13D-210ENST00000489961 ATP7AQ04656 1500 aa16.69■□□□□ 0.26
VPS13D-210ENST00000489961 TSPY4P0CV99 314 aa16.68■□□□□ 0.26
VPS13D-210ENST00000489961 TSPY10P0CW01 314 aa16.68■□□□□ 0.26
VPS13D-210ENST00000489961 DNMT1P26358 1616 aaKnown RBP16.67■□□□□ 0.26
VPS13D-210ENST00000489961 ATP10AO60312 1499 aa16.67■□□□□ 0.26
VPS13D-210ENST00000489961 ABCA6Q8N139 1617 aa16.67■□□□□ 0.26
VPS13D-210ENST00000489961 CROCC2H7BZ55 1655 aa16.66■□□□□ 0.26
VPS13D-210ENST00000489961 RTEL1-TNFRSF6BF6WH68 1400 aa16.66■□□□□ 0.26
VPS13D-210ENST00000489961 DIP2CQ9Y2E4 1556 aa16.66■□□□□ 0.26
VPS13D-210ENST00000489961 MAST1Q9Y2H9 1570 aa16.64■□□□□ 0.25
VPS13D-210ENST00000489961 DAPK1P53355 1430 aa16.64■□□□□ 0.25
VPS13D-210ENST00000489961 C9orf84Q5VXU9 1444 aa16.64■□□□□ 0.25
VPS13D-210ENST00000489961 ABCC5O15440 1437 aa16.63■□□□□ 0.25
VPS13D-210ENST00000489961 SHANK2Q9UPX8 1470 aa16.63■□□□□ 0.25
VPS13D-210ENST00000489961 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.63■□□□□ 0.25
VPS13D-210ENST00000489961 ADGBQ8N7X0 1667 aa16.62■□□□□ 0.25
VPS13D-210ENST00000489961 RRBP1Q9P2E9 1410 aaKnown RBP16.62■□□□□ 0.25
VPS13D-210ENST00000489961 REREQ9P2R6 1566 aa16.62■□□□□ 0.25
VPS13D-210ENST00000489961 ARID4BQ4LE39 1312 aaPredicted RBP16.61■□□□□ 0.25
VPS13D-210ENST00000489961 A2MP01023 1474 aa16.59■□□□□ 0.25
VPS13D-210ENST00000489961 PLXNC1O60486 1568 aa16.59■□□□□ 0.25
VPS13D-210ENST00000489961 SIGLEC1Q9BZZ2 1709 aa16.58■□□□□ 0.24
VPS13D-210ENST00000489961 AGLP35573 1532 aa16.56■□□□□ 0.24
VPS13D-210ENST00000489961 BCORL1Q5H9F3 1711 aa16.56■□□□□ 0.24
VPS13D-210ENST00000489961 ANKRD30AQ9BXX3 1397 aa16.55■□□□□ 0.24
VPS13D-210ENST00000489961 CHIC2Q9UKJ5 165 aa16.55■□□□□ 0.24
VPS13D-210ENST00000489961 DHX29Q7Z478 1369 aaKnown RBP16.54■□□□□ 0.24
VPS13D-210ENST00000489961 ITGAEP38570 1179 aa16.54■□□□□ 0.24
VPS13D-210ENST00000489961 ADGRL2O95490 1459 aa16.54■□□□□ 0.24
VPS13D-210ENST00000489961 KIF15Q9NS87 1388 aa16.52■□□□□ 0.24
VPS13D-210ENST00000489961 DUOX2Q9NRD8 1548 aa16.52■□□□□ 0.24
VPS13D-210ENST00000489961 MLECQ14165 292 aa16.51■□□□□ 0.23
VPS13D-210ENST00000489961 RRP7BPQ9NSQ0 103 aa16.51■□□□□ 0.23
VPS13D-210ENST00000489961 PTPRKQ15262 1439 aa16.51■□□□□ 0.23
VPS13D-210ENST00000489961 NCOA1Q15788 1441 aa16.51■□□□□ 0.23
VPS13D-210ENST00000489961 ADAMTSL3P82987 1691 aa16.5■□□□□ 0.23
VPS13D-210ENST00000489961 ROCK1Q13464 1354 aa16.49■□□□□ 0.23
VPS13D-210ENST00000489961 EIF2AK4Q9P2K8 1649 aaKnown RBP16.48■□□□□ 0.23
VPS13D-210ENST00000489961 KDM4FA0A1W2PPD8 638 aa16.48■□□□□ 0.23
VPS13D-210ENST00000489961 ERBINQ96RT1 1412 aa16.47■□□□□ 0.23
VPS13D-210ENST00000489961 FER1L4A9Z1Z3 1794 aa16.47■□□□□ 0.23
VPS13D-210ENST00000489961 KIF3BO15066 747 aa16.47■□□□□ 0.23
VPS13D-210ENST00000489961 MADDQ8WXG6 1647 aa16.47■□□□□ 0.23
VPS13D-210ENST00000489961 GGT6Q6P531 493 aa16.45■□□□□ 0.22
VPS13D-210ENST00000489961 RIMS1Q86UR5 1692 aaKnown RBP16.44■□□□□ 0.22
VPS13D-210ENST00000489961 ESF1Q9H501 851 aaKnown RBP16.44■□□□□ 0.22
VPS13D-210ENST00000489961 RNF17Q9BXT8 1623 aaKnown RBP16.43■□□□□ 0.22
VPS13D-210ENST00000489961 ANKRD50Q9ULJ7 1429 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms