RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 CDK11AQ9UQ88 783 aaPredicted RBP6.69□□□□□ -1.34
SNRNP40-206ENST00000489853 POTEJP0CG39 1038 aa6.68□□□□□ -1.34
SNRNP40-206ENST00000489853 GSE1Q14687 1217 aa6.68□□□□□ -1.34
SNRNP40-206ENST00000489853 KIF12Q96FN5 646 aa6.68□□□□□ -1.34
SNRNP40-206ENST00000489853 CCDC136Q96JN2 1154 aa6.67□□□□□ -1.34
SNRNP40-206ENST00000489853 TRPC6Q9Y210 931 aa6.67□□□□□ -1.34
SNRNP40-206ENST00000489853 ATN1P54259 1190 aaPredicted RBP6.66□□□□□ -1.34
SNRNP40-206ENST00000489853 RASEFQ8IZ41 740 aa6.66□□□□□ -1.34
SNRNP40-206ENST00000489853 SLC39A7Q92504 469 aa6.66□□□□□ -1.34
SNRNP40-206ENST00000489853 SCRIBQ14160 1630 aa6.66□□□□□ -1.34
SNRNP40-206ENST00000489853 C7P10643 843 aa6.66□□□□□ -1.34
SNRNP40-206ENST00000489853 BCL11BQ9C0K0 894 aaPredicted RBP6.66□□□□□ -1.34
SNRNP40-206ENST00000489853 ITGAEP38570 1179 aa6.65□□□□□ -1.34
SNRNP40-206ENST00000489853 TMEM132AQ24JP5 1023 aa6.65□□□□□ -1.34
SNRNP40-206ENST00000489853 STK24Q9Y6E0 443 aa6.65□□□□□ -1.34
SNRNP40-206ENST00000489853 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.64□□□□□ -1.35
SNRNP40-206ENST00000489853 MAP3K13O43283 966 aa6.64□□□□□ -1.35
SNRNP40-206ENST00000489853 ZFP91Q96JP5 570 aaPredicted RBP6.64□□□□□ -1.35
SNRNP40-206ENST00000489853 BMP2KQ9NSY1 1161 aaPredicted RBP6.64□□□□□ -1.35
SNRNP40-206ENST00000489853 CADPS2Q86UW7 1296 aa6.63□□□□□ -1.35
SNRNP40-206ENST00000489853 VGFO15240 615 aaPredicted RBP6.62□□□□□ -1.35
SNRNP40-206ENST00000489853 PKNOX2Q96KN3 472 aa6.62□□□□□ -1.35
SNRNP40-206ENST00000489853 POTEFA5A3E0 1075 aa6.62□□□□□ -1.35
SNRNP40-206ENST00000489853 DAXXQ9UER7 740 aaPredicted RBP6.62□□□□□ -1.35
SNRNP40-206ENST00000489853 NOP58Q9Y2X3 529 aaKnown RBP6.62□□□□□ -1.35
SNRNP40-206ENST00000489853 PYGBP11216 843 aa6.61□□□□□ -1.35
SNRNP40-206ENST00000489853 KCNV2Q8TDN2 545 aa6.61□□□□□ -1.35
SNRNP40-206ENST00000489853 IL27Q8NEV9 243 aa6.6□□□□□ -1.35
SNRNP40-206ENST00000489853 KCNH8Q96L42 1107 aa6.6□□□□□ -1.35
SNRNP40-206ENST00000489853 RTL5Q5HYW3 569 aaPredicted RBP6.6□□□□□ -1.35
SNRNP40-206ENST00000489853 RSF1Q96T23 1441 aaPredicted RBP6.6□□□□□ -1.35
SNRNP40-206ENST00000489853 TIE1P35590 1138 aa6.59□□□□□ -1.35
SNRNP40-206ENST00000489853 C14orf37Q86TY3 774 aa6.59□□□□□ -1.35
SNRNP40-206ENST00000489853 FAM212AQ96EL1 285 aa6.59□□□□□ -1.35
SNRNP40-206ENST00000489853 C11orf95C9JLR9 678 aaPredicted RBP6.58□□□□□ -1.36
SNRNP40-206ENST00000489853 LMOD2Q6P5Q4 547 aa6.58□□□□□ -1.36
SNRNP40-206ENST00000489853 CEP162Q5TB80 1403 aa6.58□□□□□ -1.36
SNRNP40-206ENST00000489853 TNIKQ9UKE5 1360 aa6.58□□□□□ -1.36
SNRNP40-206ENST00000489853 CCER2I3L3R5 266 aa6.58□□□□□ -1.36
SNRNP40-206ENST00000489853 MAMSTRQ6ZN01 415 aa6.58□□□□□ -1.36
SNRNP40-206ENST00000489853 TTLL13PA6NNM8 815 aa6.57□□□□□ -1.36
SNRNP40-206ENST00000489853 ARXQ96QS3 562 aa6.57□□□□□ -1.36
SNRNP40-206ENST00000489853 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.56□□□□□ -1.36
SNRNP40-206ENST00000489853 WASHC2AQ641Q2 1341 aa6.56□□□□□ -1.36
SNRNP40-206ENST00000489853 LCE2DQ5TA82 110 aaPredicted RBP6.56□□□□□ -1.36
SNRNP40-206ENST00000489853 PPP4R2Q9NY27 417 aa6.56□□□□□ -1.36
SNRNP40-206ENST00000489853 BRPF1P55201 1214 aaPredicted RBP6.55□□□□□ -1.36
SNRNP40-206ENST00000489853 COLQQ9Y215 455 aaPredicted RBP6.55□□□□□ -1.36
SNRNP40-206ENST00000489853 GLIPR1L2Q4G1C9 344 aa6.54□□□□□ -1.36
SNRNP40-206ENST00000489853 SCUBE2Q9NQ36 999 aa6.54□□□□□ -1.36
SNRNP40-206ENST00000489853 PCDHB13Q9Y5F0 798 aa6.54□□□□□ -1.36
SNRNP40-206ENST00000489853 RSPH6AQ9H0K4 717 aa6.54□□□□□ -1.36
SNRNP40-206ENST00000489853 USP35Q9P2H5 1018 aa6.54□□□□□ -1.36
SNRNP40-206ENST00000489853 DHX57Q6P158 1386 aaKnown RBP6.53□□□□□ -1.36
SNRNP40-206ENST00000489853 WASHC2CQ9Y4E1 1318 aa6.53□□□□□ -1.36
SNRNP40-206ENST00000489853 P3H3Q8IVL6 736 aa6.53□□□□□ -1.36
SNRNP40-206ENST00000489853 IPO9Q96P70 1041 aaKnown RBP6.53□□□□□ -1.36
SNRNP40-206ENST00000489853 CHRM1P11229 460 aaPredicted RBP6.52□□□□□ -1.37
SNRNP40-206ENST00000489853 SGIP1Q9BQI5 828 aa6.52□□□□□ -1.37
SNRNP40-206ENST00000489853 TRIM35Q9UPQ4 493 aa6.52□□□□□ -1.37
SNRNP40-206ENST00000489853 IFNL1Q8IU54 200 aa6.52□□□□□ -1.37
SNRNP40-206ENST00000489853 CUX2O14529 1486 aa6.52□□□□□ -1.37
SNRNP40-206ENST00000489853 TRIM52Q96A61 297 aa6.51□□□□□ -1.37
SNRNP40-206ENST00000489853 FAM163AQ96GL9 167 aaPredicted RBP6.51□□□□□ -1.37
SNRNP40-206ENST00000489853 PODXL2Q9NZ53 605 aa6.51□□□□□ -1.37
SNRNP40-206ENST00000489853 SEC24BO95487 1268 aa6.5□□□□□ -1.37
SNRNP40-206ENST00000489853 ANP32AP39687 249 aaKnown RBP6.5□□□□□ -1.37
SNRNP40-206ENST00000489853 PPP1R15AO75807 674 aaPredicted RBP6.5□□□□□ -1.37
SNRNP40-206ENST00000489853 WDR70Q9NW82 654 aa6.5□□□□□ -1.37
SNRNP40-206ENST00000489853 DDX10Q13206 875 aaKnown RBP6.49□□□□□ -1.37
SNRNP40-206ENST00000489853 NESP48681 1621 aa6.49□□□□□ -1.37
SNRNP40-206ENST00000489853 ANP32CO43423 234 aa6.48□□□□□ -1.37
SNRNP40-206ENST00000489853 IER5LQ5T953 404 aa6.48□□□□□ -1.37
SNRNP40-206ENST00000489853 ZC3H15Q8WU90 426 aaKnown RBP6.48□□□□□ -1.37
SNRNP40-206ENST00000489853 SLC24A3Q9HC58 644 aa6.48□□□□□ -1.37
SNRNP40-206ENST00000489853 RYDENQ9NUL5 291 aaKnown RBP6.48□□□□□ -1.37
SNRNP40-206ENST00000489853 SEMA3EO15041 775 aa6.47□□□□□ -1.37
SNRNP40-206ENST00000489853 NEUROD2Q15784 382 aa6.47□□□□□ -1.37
SNRNP40-206ENST00000489853 HOMEZQ8IX15 550 aa6.47□□□□□ -1.37
SNRNP40-206ENST00000489853 TMEM106CQ9BVX2 250 aa6.47□□□□□ -1.37
SNRNP40-206ENST00000489853 NCAPD3P42695 1498 aa6.47□□□□□ -1.37
SNRNP40-206ENST00000489853 PPP1R37O75864 691 aa6.46□□□□□ -1.37
SNRNP40-206ENST00000489853 ZMYND15Q9H091 742 aa6.46□□□□□ -1.37
SNRNP40-206ENST00000489853 PCDHB8Q9UN66 801 aa6.46□□□□□ -1.37
SNRNP40-206ENST00000489853 EEA1Q15075 1411 aa6.46□□□□□ -1.38
SNRNP40-206ENST00000489853 PPM1GO15355 546 aaPredicted RBP6.46□□□□□ -1.38
SNRNP40-206ENST00000489853 UBTFP17480 764 aaKnown RBP6.46□□□□□ -1.38
SNRNP40-206ENST00000489853 CDAN1Q8IWY9 1227 aa6.46□□□□□ -1.38
SNRNP40-206ENST00000489853 MFRPQ9BY79 579 aa6.46□□□□□ -1.38
SNRNP40-206ENST00000489853 IRX6P78412 446 aaPredicted RBP6.45□□□□□ -1.38
SNRNP40-206ENST00000489853 FAM43AQ8N2R8 423 aa6.44□□□□□ -1.38
SNRNP40-206ENST00000489853 ERCC6Q03468 1493 aa6.44□□□□□ -1.38
SNRNP40-206ENST00000489853 NEFMP07197 916 aa6.43□□□□□ -1.38
SNRNP40-206ENST00000489853 BRPF3Q9ULD4 1205 aa6.43□□□□□ -1.38
SNRNP40-206ENST00000489853 ATAD2BQ9ULI0 1458 aa6.43□□□□□ -1.38
SNRNP40-206ENST00000489853 IRX5P78411 483 aaPredicted RBP6.42□□□□□ -1.38
SNRNP40-206ENST00000489853 B4GALNT3Q6L9W6 998 aa6.42□□□□□ -1.38
SNRNP40-206ENST00000489853 PLCG2P16885 1265 aa6.41□□□□□ -1.38
SNRNP40-206ENST00000489853 HNRNPUQ00839 825 aaKnown RBP eCLIP6.41□□□□□ -1.38
SNRNP40-206ENST00000489853 SLAIN1Q8ND83 568 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms