RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 ARHGEF12Q9NZN5 1544 aa26.39■■□□□ 1.81
UFD1-209ENST00000489406 MAGI2Q86UL8 1455 aa26.36■■□□□ 1.81
UFD1-209ENST00000489406 UBAP1LF5GYI3 381 aa26.34■■□□□ 1.81
UFD1-209ENST00000489406 HECW1Q76N89 1606 aa26.33■■□□□ 1.81
UFD1-209ENST00000489406 CFAP74Q9C0B2 1584 aa26.31■■□□□ 1.8
UFD1-209ENST00000489406 SETD1BQ9UPS6 1966 aaKnown RBP26.27■■□□□ 1.8
UFD1-209ENST00000489406 ATP10AO60312 1499 aa26.27■■□□□ 1.8
UFD1-209ENST00000489406 RAPGEF6Q8TEU7 1601 aa26.27■■□□□ 1.8
UFD1-209ENST00000489406 C9orf84Q5VXU9 1444 aa26.23■■□□□ 1.79
UFD1-209ENST00000489406 PLEKHD1A6NEE1 506 aa26.23■■□□□ 1.79
UFD1-209ENST00000489406 MED1Q15648 1581 aaPredicted RBP26.21■■□□□ 1.79
UFD1-209ENST00000489406 SCAPERQ9BY12 1400 aa26.21■■□□□ 1.79
UFD1-209ENST00000489406 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.2■■□□□ 1.79
UFD1-209ENST00000489406 NUP153P49790 1475 aaKnown RBP26.19■■□□□ 1.78
UFD1-209ENST00000489406 NCOA1Q15788 1441 aa26.18■■□□□ 1.78
UFD1-209ENST00000489406 ZNF335Q9H4Z2 1342 aaPredicted RBP26.17■■□□□ 1.78
UFD1-209ENST00000489406 HSPA1LP34931 641 aa26.14■■□□□ 1.78
UFD1-209ENST00000489406 C3P01024 1663 aa26.11■■□□□ 1.77
UFD1-209ENST00000489406 PHF23Q9BUL5 403 aaPredicted RBP26.1■■□□□ 1.77
UFD1-209ENST00000489406 TRAPPC8Q9Y2L5 1435 aa26.1■■□□□ 1.77
UFD1-209ENST00000489406 SCAF1Q9H7N4 1312 aaKnown RBP26.1■■□□□ 1.77
UFD1-209ENST00000489406 PRXQ9BXM0 1461 aa26.1■■□□□ 1.77
UFD1-209ENST00000489406 SAMD9Q5K651 1589 aa26.07■■□□□ 1.76
UFD1-209ENST00000489406 NCKAP5LQ9HCH0 1330 aa26.07■■□□□ 1.76
UFD1-209ENST00000489406 ESF1Q9H501 851 aaKnown RBP26.06■■□□□ 1.76
UFD1-209ENST00000489406 PIP4K2BP78356 416 aa26.05■■□□□ 1.76
UFD1-209ENST00000489406 CAMSAP1Q5T5Y3 1602 aa26.05■■□□□ 1.76
UFD1-209ENST00000489406 PLCH2O75038 1416 aa26.03■■□□□ 1.76
UFD1-209ENST00000489406 MYT1LQ9UL68 1186 aa26.02■■□□□ 1.76
UFD1-209ENST00000489406 EFCAB2Q5VUJ9 269 aa25.97■■□□□ 1.75
UFD1-209ENST00000489406 AFAP1Q8N556 730 aa25.97■■□□□ 1.75
UFD1-209ENST00000489406 RANGAP1P46060 587 aaPredicted RBP25.96■■□□□ 1.75
UFD1-209ENST00000489406 ZNF518AQ6AHZ1 1483 aa25.92■■□□□ 1.74
UFD1-209ENST00000489406 DIP2CQ9Y2E4 1556 aa25.92■■□□□ 1.74
UFD1-209ENST00000489406 TOM1O60784 492 aa25.91■■□□□ 1.74
UFD1-209ENST00000489406 PKD2Q13563 968 aa25.89■■□□□ 1.74
UFD1-209ENST00000489406 REREQ9P2R6 1566 aa25.88■■□□□ 1.73
UFD1-209ENST00000489406 KDM5CP41229 1560 aa25.87■■□□□ 1.73
UFD1-209ENST00000489406 AGLP35573 1532 aa25.86■■□□□ 1.73
UFD1-209ENST00000489406 PPP6R1Q9UPN7 881 aa25.85■■□□□ 1.73
UFD1-209ENST00000489406 CNTLNQ9NXG0 1405 aa25.85■■□□□ 1.73
UFD1-209ENST00000489406 CDK13Q14004 1512 aaKnown RBP25.84■■□□□ 1.73
UFD1-209ENST00000489406 NPATQ14207 1427 aa25.84■■□□□ 1.73
UFD1-209ENST00000489406 ABCA6Q8N139 1617 aa25.84■■□□□ 1.73
UFD1-209ENST00000489406 MYO5CQ9NQX4 1742 aa25.82■■□□□ 1.72
UFD1-209ENST00000489406 PLA2R1Q13018 1463 aa25.81■■□□□ 1.72
UFD1-209ENST00000489406 TCOF1Q13428 1488 aaKnown RBP25.8■■□□□ 1.72
UFD1-209ENST00000489406 SENP3Q9H4L4 574 aaPredicted RBP25.79■■□□□ 1.72
UFD1-209ENST00000489406 ZMYM3Q14202 1370 aa25.78■■□□□ 1.72
UFD1-209ENST00000489406 MLH3Q9UHC1 1453 aa25.77■■□□□ 1.72
UFD1-209ENST00000489406 ARHGAP5Q13017 1502 aa25.75■■□□□ 1.71
UFD1-209ENST00000489406 RGS17Q9UGC6 210 aaPredicted RBP25.74■■□□□ 1.71
UFD1-209ENST00000489406 SUPT6HQ7KZ85 1726 aaKnown RBP25.74■■□□□ 1.71
UFD1-209ENST00000489406 MROH2AA6NES4 1674 aa25.71■■□□□ 1.71
UFD1-209ENST00000489406 ZNF142P52746 1687 aaPredicted RBP25.71■■□□□ 1.71
UFD1-209ENST00000489406 MYO3AQ8NEV4 1616 aa25.7■■□□□ 1.71
UFD1-209ENST00000489406 CEP170BQ9Y4F5 1589 aaPredicted RBP25.7■■□□□ 1.71
UFD1-209ENST00000489406 CPS1P31327 1500 aa25.7■■□□□ 1.7
UFD1-209ENST00000489406 PTPRKQ15262 1439 aa25.67■■□□□ 1.7
UFD1-209ENST00000489406 ATP1B4Q9UN42 357 aaPredicted RBP25.67■■□□□ 1.7
UFD1-209ENST00000489406 KIF14Q15058 1648 aa25.66■■□□□ 1.7
UFD1-209ENST00000489406 SHANK2Q9UPX8 1470 aa25.66■■□□□ 1.7
UFD1-209ENST00000489406 ALKQ9UM73 1620 aa25.64■■□□□ 1.7
UFD1-209ENST00000489406 CSRNP3Q8WYN3 585 aa25.63■■□□□ 1.69
UFD1-209ENST00000489406 CDK11AQ9UQ88 783 aaPredicted RBP25.61■■□□□ 1.69
UFD1-209ENST00000489406 KIDINS220Q9ULH0 1771 aa25.61■■□□□ 1.69
UFD1-209ENST00000489406 CLTCQ00610 1675 aaKnown RBP25.58■■□□□ 1.69
UFD1-209ENST00000489406 POTEAQ6S8J7 498 aa25.55■■□□□ 1.68
UFD1-209ENST00000489406 ABCC1P33527 1531 aa25.54■■□□□ 1.68
UFD1-209ENST00000489406 CDC42BPBQ9Y5S2 1711 aa25.54■■□□□ 1.68
UFD1-209ENST00000489406 TROQ12816 1431 aaPredicted RBP25.53■■□□□ 1.68
UFD1-209ENST00000489406 A2ML1A8K2U0 1454 aa25.53■■□□□ 1.68
UFD1-209ENST00000489406 NEURL4Q96JN8 1562 aa25.52■■□□□ 1.68
UFD1-209ENST00000489406 DNMT1P26358 1616 aaKnown RBP25.52■■□□□ 1.68
UFD1-209ENST00000489406 ITSN2Q9NZM3 1697 aa25.52■■□□□ 1.68
UFD1-209ENST00000489406 POLR1AO95602 1720 aaPredicted RBP25.49■■□□□ 1.67
UFD1-209ENST00000489406 VWDEQ8N2E2 1590 aa25.49■■□□□ 1.67
UFD1-209ENST00000489406 GGT6Q6P531 493 aa25.49■■□□□ 1.67
UFD1-209ENST00000489406 CLIP1P30622 1438 aa25.48■■□□□ 1.67
UFD1-209ENST00000489406 ANKLE2Q86XL3 938 aa25.43■■□□□ 1.66
UFD1-209ENST00000489406 PREX2Q70Z35 1606 aa25.42■■□□□ 1.66
UFD1-209ENST00000489406 SAMD9LQ8IVG5 1584 aa25.42■■□□□ 1.66
UFD1-209ENST00000489406 SPAG9O60271 1321 aaKnown RBP25.41■■□□□ 1.66
UFD1-209ENST00000489406 SETD1AO15047 1707 aaKnown RBP25.39■■□□□ 1.65
UFD1-209ENST00000489406 LRRC7Q96NW7 1537 aa25.38■■□□□ 1.65
UFD1-209ENST00000489406 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.38■■□□□ 1.65
UFD1-209ENST00000489406 FMN1Q68DA7 1419 aa25.37■■□□□ 1.65
UFD1-209ENST00000489406 ZNF777Q9ULD5 760 aaPredicted RBP25.37■■□□□ 1.65
UFD1-209ENST00000489406 NPHP4O75161 1426 aaPredicted RBP25.36■■□□□ 1.65
UFD1-209ENST00000489406 A2MP01023 1474 aa25.35■■□□□ 1.65
UFD1-209ENST00000489406 RNF17Q9BXT8 1623 aaKnown RBP25.35■■□□□ 1.65
UFD1-209ENST00000489406 FBXO31Q5XUX0 539 aaPredicted RBP25.34■■□□□ 1.65
UFD1-209ENST00000489406 PLXNC1O60486 1568 aa25.34■■□□□ 1.65
UFD1-209ENST00000489406 TNRQ92752 1358 aa25.33■■□□□ 1.65
UFD1-209ENST00000489406 HNRNPMP52272 730 aaKnown RBP eCLIP25.33■■□□□ 1.65
UFD1-209ENST00000489406 STRCP1A6NGW2 1772 aa25.31■■□□□ 1.64
UFD1-209ENST00000489406 THEMISQ8N1K5 641 aaPredicted RBP25.31■■□□□ 1.64
UFD1-209ENST00000489406 MED14O60244 1454 aa25.3■■□□□ 1.64
UFD1-209ENST00000489406 ATP7AQ04656 1500 aa25.3■■□□□ 1.64
UFD1-209ENST00000489406 SYCP2Q9BX26 1530 aa25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms