RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 P3H3Q8IVL6 736 aa9.58□□□□□ -0.88
CUX1-208ENST00000485792 CFAP43Q8NDM7 1665 aa9.58□□□□□ -0.88
CUX1-208ENST00000485792 ZBTB12Q9Y330 459 aaPredicted RBP9.57□□□□□ -0.88
CUX1-208ENST00000485792 SIGLEC1Q9BZZ2 1709 aa9.56□□□□□ -0.88
CUX1-208ENST00000485792 HECW1Q76N89 1606 aa9.56□□□□□ -0.88
CUX1-208ENST00000485792 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.54□□□□□ -0.88
CUX1-208ENST00000485792 KDM6BO15054 1643 aa9.53□□□□□ -0.88
CUX1-208ENST00000485792 ARID3CA6NKF2 412 aa9.52□□□□□ -0.89
CUX1-208ENST00000485792 RANGAP1P46060 587 aaPredicted RBP9.52□□□□□ -0.89
CUX1-208ENST00000485792 CEP162Q5TB80 1403 aa9.5□□□□□ -0.89
CUX1-208ENST00000485792 RICTORQ6R327 1708 aa9.5□□□□□ -0.89
CUX1-208ENST00000485792 CDC42BPBQ9Y5S2 1711 aa9.49□□□□□ -0.89
CUX1-208ENST00000485792 CLIP1P30622 1438 aa9.48□□□□□ -0.89
CUX1-208ENST00000485792 CDC42BPAQ5VT25 1732 aa9.48□□□□□ -0.89
CUX1-208ENST00000485792 FAM69CQ0P6D2 419 aa9.48□□□□□ -0.89
CUX1-208ENST00000485792 FYCO1Q9BQS8 1478 aa9.47□□□□□ -0.89
CUX1-208ENST00000485792 PREX2Q70Z35 1606 aa9.47□□□□□ -0.89
CUX1-208ENST00000485792 MYO5CQ9NQX4 1742 aa9.47□□□□□ -0.89
CUX1-208ENST00000485792 CASKIN1Q8WXD9 1431 aa9.47□□□□□ -0.89
CUX1-208ENST00000485792 NPM1P06748 294 aaKnown RBP eCLIP9.46□□□□□ -0.9
CUX1-208ENST00000485792 LOC105371045A0A1W2PR82 267 aa9.45□□□□□ -0.9
CUX1-208ENST00000485792 RBM42Q9BTD8 480 aaKnown RBP9.45□□□□□ -0.9
CUX1-208ENST00000485792 FMN1Q68DA7 1419 aa9.45□□□□□ -0.9
CUX1-208ENST00000485792 TIAM1Q13009 1591 aa9.43□□□□□ -0.9
CUX1-208ENST00000485792 UBTFP17480 764 aaKnown RBP9.43□□□□□ -0.9
CUX1-208ENST00000485792 ITSN2Q9NZM3 1697 aa9.42□□□□□ -0.9
CUX1-208ENST00000485792 SAMD9LQ8IVG5 1584 aa9.41□□□□□ -0.9
CUX1-208ENST00000485792 ARAP3Q8WWN8 1544 aa9.41□□□□□ -0.9
CUX1-208ENST00000485792 ARHGEF12Q9NZN5 1544 aa9.41□□□□□ -0.9
CUX1-208ENST00000485792 TROQ12816 1431 aaPredicted RBP9.41□□□□□ -0.9
CUX1-208ENST00000485792 CD109Q6YHK3 1445 aa9.41□□□□□ -0.9
CUX1-208ENST00000485792 MKRN4PQ13434 485 aaPredicted RBP9.41□□□□□ -0.9
CUX1-208ENST00000485792 ARHGEF40Q8TER5 1519 aa9.41□□□□□ -0.9
CUX1-208ENST00000485792 ABCC1P33527 1531 aa9.4□□□□□ -0.91
CUX1-208ENST00000485792 ZMYM4Q5VZL5 1548 aa9.4□□□□□ -0.91
CUX1-208ENST00000485792 CCDC18Q5T9S5 1454 aa9.39□□□□□ -0.91
CUX1-208ENST00000485792 TEX14Q8IWB6 1497 aa9.39□□□□□ -0.91
CUX1-208ENST00000485792 KDM5CP41229 1560 aa9.38□□□□□ -0.91
CUX1-208ENST00000485792 ABCA6Q8N139 1617 aa9.38□□□□□ -0.91
CUX1-208ENST00000485792 CFAP74Q9C0B2 1584 aa9.37□□□□□ -0.91
CUX1-208ENST00000485792 NEO1Q92859 1461 aa9.37□□□□□ -0.91
CUX1-208ENST00000485792 VPS8Q8N3P4 1428 aa9.37□□□□□ -0.91
CUX1-208ENST00000485792 EHBP1L1Q8N3D4 1523 aa9.36□□□□□ -0.91
CUX1-208ENST00000485792 FANCAO15360 1455 aa9.36□□□□□ -0.91
CUX1-208ENST00000485792 KCNH8Q96L42 1107 aa9.36□□□□□ -0.91
CUX1-208ENST00000485792 PLCH2O75038 1416 aa9.35□□□□□ -0.91
CUX1-208ENST00000485792 KIDINS220Q9ULH0 1771 aa9.35□□□□□ -0.91
CUX1-208ENST00000485792 INO80Q9ULG1 1556 aaPredicted RBP9.34□□□□□ -0.91
CUX1-208ENST00000485792 DIP2CQ9Y2E4 1556 aa9.34□□□□□ -0.91
CUX1-208ENST00000485792 POGZQ7Z3K3 1410 aa9.34□□□□□ -0.91
CUX1-208ENST00000485792 YEATS2Q9ULM3 1422 aa9.34□□□□□ -0.91
CUX1-208ENST00000485792 SYCP2Q9BX26 1530 aa9.34□□□□□ -0.91
CUX1-208ENST00000485792 GPATCH8Q9UKJ3 1502 aaKnown RBP9.34□□□□□ -0.91
CUX1-208ENST00000485792 ADAMTSL3P82987 1691 aa9.33□□□□□ -0.92
CUX1-208ENST00000485792 FKBP8Q14318 412 aa9.33□□□□□ -0.92
CUX1-208ENST00000485792 ADGRL1O94910 1474 aa9.33□□□□□ -0.92
CUX1-208ENST00000485792 AKNAQ7Z591 1439 aa9.32□□□□□ -0.92
CUX1-208ENST00000485792 BCORL1Q5H9F3 1711 aa9.32□□□□□ -0.92
CUX1-208ENST00000485792 ARHGAP5Q13017 1502 aa9.31□□□□□ -0.92
CUX1-208ENST00000485792 SUPT6HQ7KZ85 1726 aaKnown RBP9.31□□□□□ -0.92
CUX1-208ENST00000485792 PHLDB1Q86UU1 1377 aa9.31□□□□□ -0.92
CUX1-208ENST00000485792 HECW2Q9P2P5 1572 aa9.31□□□□□ -0.92
CUX1-208ENST00000485792 ADGBQ8N7X0 1667 aa9.31□□□□□ -0.92
CUX1-208ENST00000485792 MADDQ8WXG6 1647 aa9.31□□□□□ -0.92
CUX1-208ENST00000485792 TRAPPC8Q9Y2L5 1435 aa9.31□□□□□ -0.92
CUX1-208ENST00000485792 NCOA2Q15596 1464 aa9.3□□□□□ -0.92
CUX1-208ENST00000485792 LRRC9Q6ZRR7 1453 aa9.3□□□□□ -0.92
CUX1-208ENST00000485792 ZFYVE16Q7Z3T8 1539 aa9.3□□□□□ -0.92
CUX1-208ENST00000485792 PLXNC1O60486 1568 aa9.29□□□□□ -0.92
CUX1-208ENST00000485792 KDM4FA0A1W2PPD8 638 aa9.29□□□□□ -0.92
CUX1-208ENST00000485792 PLEKHD1A6NEE1 506 aa9.29□□□□□ -0.92
CUX1-208ENST00000485792 MAP3K1Q13233 1512 aa9.29□□□□□ -0.92
CUX1-208ENST00000485792 CROCC2H7BZ55 1655 aa9.29□□□□□ -0.92
CUX1-208ENST00000485792 RAPGEF3O95398 923 aa9.28□□□□□ -0.92
CUX1-208ENST00000485792 DENND4BO75064 1496 aaPredicted RBP9.28□□□□□ -0.92
CUX1-208ENST00000485792 MBD5Q9P267 1494 aa9.28□□□□□ -0.92
CUX1-208ENST00000485792 REREQ9P2R6 1566 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 SCAPERQ9BY12 1400 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 SPDYE2BA6NHP3 402 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 SPDYE6P0CI01 402 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 SPDYE2Q495Y8 402 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 KANK4Q5T7N3 995 aaPredicted RBP9.26□□□□□ -0.93
CUX1-208ENST00000485792 AKT1S1Q96B36 256 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 CAMSAP2Q08AD1 1489 aa9.26□□□□□ -0.93
CUX1-208ENST00000485792 RIMS1Q86UR5 1692 aaKnown RBP9.26□□□□□ -0.93
CUX1-208ENST00000485792 ZNF644Q9H582 1327 aaPredicted RBP9.24□□□□□ -0.93
CUX1-208ENST00000485792 FER1L4A9Z1Z3 1794 aa9.24□□□□□ -0.93
CUX1-208ENST00000485792 ZNF518AQ6AHZ1 1483 aa9.23□□□□□ -0.93
CUX1-208ENST00000485792 ATP7AQ04656 1500 aa9.23□□□□□ -0.93
CUX1-208ENST00000485792 SPDYE4A6NLX3 237 aa9.23□□□□□ -0.93
CUX1-208ENST00000485792 ATP1B4Q9UN42 357 aaPredicted RBP9.23□□□□□ -0.93
CUX1-208ENST00000485792 CDK11AQ9UQ88 783 aaPredicted RBP9.23□□□□□ -0.93
CUX1-208ENST00000485792 MROH1Q8NDA8 1641 aa9.23□□□□□ -0.93
CUX1-208ENST00000485792 ARHGEF5Q12774 1597 aa9.22□□□□□ -0.93
CUX1-208ENST00000485792 MLH3Q9UHC1 1453 aa9.21□□□□□ -0.93
CUX1-208ENST00000485792 MTUS2Q5JR59 1369 aa9.21□□□□□ -0.94
CUX1-208ENST00000485792 MAST1Q9Y2H9 1570 aa9.2□□□□□ -0.94
CUX1-208ENST00000485792 PTPN23Q9H3S7 1636 aa9.2□□□□□ -0.94
CUX1-208ENST00000485792 ZNF692Q9BU19 519 aaPredicted RBP9.2□□□□□ -0.94
CUX1-208ENST00000485792 MAGI2Q86UL8 1455 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms