RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 CECR2Q9BXF3 1484 aa11.21□□□□□ -0.61
SF3B1-209ENST00000479532 KLHL34Q8N239 644 aa11.19□□□□□ -0.62
SF3B1-209ENST00000479532 CHRM1P11229 460 aaPredicted RBP11.16□□□□□ -0.62
SF3B1-209ENST00000479532 PTGER2P43116 358 aa11.16□□□□□ -0.62
SF3B1-209ENST00000479532 ILDR1Q86SU0 546 aaPredicted RBP11.16□□□□□ -0.62
SF3B1-209ENST00000479532 VASPP50552 380 aaPredicted RBP11.15□□□□□ -0.62
SF3B1-209ENST00000479532 PDAP1Q13442 181 aaKnown RBP11.15□□□□□ -0.62
SF3B1-209ENST00000479532 ZNF687Q8N1G0 1237 aa11.14□□□□□ -0.63
SF3B1-209ENST00000479532 CABP2Q9NPB3 220 aa11.14□□□□□ -0.63
SF3B1-209ENST00000479532 SMARCA2P51531 1590 aa11.14□□□□□ -0.63
SF3B1-209ENST00000479532 MROH2BQ7Z745 1585 aa11.14□□□□□ -0.63
SF3B1-209ENST00000479532 SLC24A1O60721 1099 aa11.13□□□□□ -0.63
SF3B1-209ENST00000479532 ANKRD13DQ6ZTN6 518 aa11.12□□□□□ -0.63
SF3B1-209ENST00000479532 PEG3Q9GZU2 1588 aa11.09□□□□□ -0.63
SF3B1-209ENST00000479532 ATAD2BQ9ULI0 1458 aa11.09□□□□□ -0.63
SF3B1-209ENST00000479532 ZSWIM6Q9HCJ5 1215 aa11.07□□□□□ -0.64
SF3B1-209ENST00000479532 NCAPD3P42695 1498 aa11.06□□□□□ -0.64
SF3B1-209ENST00000479532 RSF1Q96T23 1441 aaPredicted RBP11.06□□□□□ -0.64
SF3B1-209ENST00000479532 HMGXB3Q12766 1538 aa11.05□□□□□ -0.64
SF3B1-209ENST00000479532 WIZO95785 1651 aa11.05□□□□□ -0.64
SF3B1-209ENST00000479532 BAZ1BQ9UIG0 1483 aaKnown RBP11.05□□□□□ -0.64
SF3B1-209ENST00000479532 IFNLR1Q8IU57 520 aaPredicted RBP11.03□□□□□ -0.64
SF3B1-209ENST00000479532 PLA2G2EQ9NZK7 142 aa11□□□□□ -0.65
SF3B1-209ENST00000479532 GPR153Q6NV75 609 aa10.99□□□□□ -0.65
SF3B1-209ENST00000479532 TOP2AP11388 1531 aaKnown RBP10.96□□□□□ -0.65
SF3B1-209ENST00000479532 LSM11P83369 360 aaKnown RBP eCLIP10.94□□□□□ -0.664e-12■■□□□ 14.5
SF3B1-209ENST00000479532 ARSIQ5FYB1 569 aa10.94□□□□□ -0.66
SF3B1-209ENST00000479532 CIZ1Q9ULV3 898 aaPredicted RBP10.94□□□□□ -0.66
SF3B1-209ENST00000479532 SUPT5HO00267 1087 aaKnown RBP10.93□□□□□ -0.66
SF3B1-209ENST00000479532 MICALL2Q8IY33 904 aa10.91□□□□□ -0.66
SF3B1-209ENST00000479532 EFCAB3Q8N7B9 438 aa10.91□□□□□ -0.66
SF3B1-209ENST00000479532 HCSTQ9UBK5 93 aa10.91□□□□□ -0.66
SF3B1-209ENST00000479532 ZNF316A6NFI3 1004 aaPredicted RBP10.9□□□□□ -0.66
SF3B1-209ENST00000479532 TMEM92Q6UXU6 159 aa10.9□□□□□ -0.66
SF3B1-209ENST00000479532 KHSRPQ92945 711 aaKnown RBP eCLIP10.83□□□□□ -0.68
SF3B1-209ENST00000479532 PBX2P40425 430 aa10.82□□□□□ -0.68
SF3B1-209ENST00000479532 PKD2Q13563 968 aa10.82□□□□□ -0.68
SF3B1-209ENST00000479532 SPOCK2Q92563 424 aa10.82□□□□□ -0.68
SF3B1-209ENST00000479532 LAMC3Q9Y6N6 1575 aa10.8□□□□□ -0.68
SF3B1-209ENST00000479532 CCDC88BA6NC98 1476 aa10.8□□□□□ -0.68
SF3B1-209ENST00000479532 AXIN2Q9Y2T1 843 aa10.78□□□□□ -0.68
SF3B1-209ENST00000479532 SOX12O15370 315 aa10.77□□□□□ -0.69
SF3B1-209ENST00000479532 CADPSQ9ULU8 1353 aa10.76□□□□□ -0.69
SF3B1-209ENST00000479532 PRDM2Q13029 1718 aa10.74□□□□□ -0.69
SF3B1-209ENST00000479532 NESP48681 1621 aa10.73□□□□□ -0.69
SF3B1-209ENST00000479532 NUDT7P0C024 238 aa10.72□□□□□ -0.69
SF3B1-209ENST00000479532 PDS5BQ9NTI5 1447 aa10.72□□□□□ -0.69
SF3B1-209ENST00000479532 CFTRP13569 1480 aa10.72□□□□□ -0.69
SF3B1-209ENST00000479532 ERCC6Q03468 1493 aa10.71□□□□□ -0.69
SF3B1-209ENST00000479532 ADGRD1Q6QNK2 874 aa10.69□□□□□ -0.7
SF3B1-209ENST00000479532 MS4A4AQ96JQ5 239 aa10.69□□□□□ -0.7
SF3B1-209ENST00000479532 LHX6Q9UPM6 363 aa10.69□□□□□ -0.7
SF3B1-209ENST00000479532 PHF8Q9UPP1 1060 aa10.69□□□□□ -0.7
SF3B1-209ENST00000479532 ECM2O94769 699 aaPredicted RBP10.68□□□□□ -0.7
SF3B1-209ENST00000479532 TRIM41Q8WV44 630 aa10.67□□□□□ -0.7
SF3B1-209ENST00000479532 STAC3Q96MF2 364 aa10.67□□□□□ -0.7
SF3B1-209ENST00000479532 PLCB2Q00722 1185 aa10.66□□□□□ -0.7
SF3B1-209ENST00000479532 POTEEQ6S8J3 1075 aa10.66□□□□□ -0.7
SF3B1-209ENST00000479532 KIF21AQ7Z4S6 1674 aa10.66□□□□□ -0.7
SF3B1-209ENST00000479532 ARHGAP33O14559 1287 aa10.65□□□□□ -0.7
SF3B1-209ENST00000479532 IRX2Q9BZI1 471 aaPredicted RBP10.65□□□□□ -0.7
SF3B1-209ENST00000479532 FANCD2Q9BXW9 1451 aa10.65□□□□□ -0.7
SF3B1-209ENST00000479532 CEP164Q9UPV0 1460 aa10.64□□□□□ -0.71
SF3B1-209ENST00000479532 KCTD12Q96CX2 325 aaKnown RBP10.62□□□□□ -0.71
SF3B1-209ENST00000479532 PCDHGA4Q9Y5G9 962 aa10.6□□□□□ -0.71
SF3B1-209ENST00000479532 RGS20O76081 388 aa10.59□□□□□ -0.71
SF3B1-209ENST00000479532 NLRP6P59044 892 aa10.59□□□□□ -0.71
SF3B1-209ENST00000479532 MRC2Q9UBG0 1479 aa10.58□□□□□ -0.72
SF3B1-209ENST00000479532 THOC2Q8NI27 1593 aaKnown RBP10.57□□□□□ -0.72
SF3B1-209ENST00000479532 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.57□□□□□ -0.72
SF3B1-209ENST00000479532 PSDA5PKW4 1024 aaPredicted RBP10.57□□□□□ -0.72
SF3B1-209ENST00000479532 TK2O00142 265 aa10.57□□□□□ -0.72
SF3B1-209ENST00000479532 RGL2O15211 777 aa10.57□□□□□ -0.72
SF3B1-209ENST00000479532 ZFP91Q96JP5 570 aaPredicted RBP10.57□□□□□ -0.72
SF3B1-209ENST00000479532 C2orf72A6NCS6 295 aa10.56□□□□□ -0.72
SF3B1-209ENST00000479532 RIOK3O14730 519 aaKnown RBP10.56□□□□□ -0.72
SF3B1-209ENST00000479532 ABCC8Q09428 1581 aa10.55□□□□□ -0.72
SF3B1-209ENST00000479532 SLC34A2O95436 690 aa10.54□□□□□ -0.72
SF3B1-209ENST00000479532 WDR62O43379 1518 aa10.53□□□□□ -0.72
SF3B1-209ENST00000479532 VGFO15240 615 aaPredicted RBP10.53□□□□□ -0.72
SF3B1-209ENST00000479532 HAP1P54257 671 aaPredicted RBP10.53□□□□□ -0.72
SF3B1-209ENST00000479532 PTPN5P54829 565 aa10.53□□□□□ -0.72
SF3B1-209ENST00000479532 CUX2O14529 1486 aa10.53□□□□□ -0.72
SF3B1-209ENST00000479532 HRO43593 1189 aa10.52□□□□□ -0.73
SF3B1-209ENST00000479532 DNMBPQ6XZF7 1577 aa10.52□□□□□ -0.73
SF3B1-209ENST00000479532 KIF3CO14782 793 aa10.51□□□□□ -0.73
SF3B1-209ENST00000479532 PSEN2P49810 448 aa10.51□□□□□ -0.73
SF3B1-209ENST00000479532 URB2Q14146 1524 aaKnown RBP10.5□□□□□ -0.73
SF3B1-209ENST00000479532 DMRTA1Q5VZB9 504 aa10.5□□□□□ -0.73
SF3B1-209ENST00000479532 TMC2Q8TDI7 906 aa10.49□□□□□ -0.73
SF3B1-209ENST00000479532 BBXQ8WY36 941 aaPredicted RBP10.49□□□□□ -0.73
SF3B1-209ENST00000479532 TOPBP1Q92547 1522 aa10.48□□□□□ -0.73
SF3B1-209ENST00000479532 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.48□□□□□ -0.73
SF3B1-209ENST00000479532 WRNQ14191 1432 aaPredicted RBP eCLIP10.47□□□□□ -0.73
SF3B1-209ENST00000479532 KCNH8Q96L42 1107 aa10.46□□□□□ -0.73
SF3B1-209ENST00000479532 FBXO22Q8NEZ5 403 aa10.45□□□□□ -0.74
SF3B1-209ENST00000479532 BIVM-ERCC5R4GMW8 1640 aa10.44□□□□□ -0.74
SF3B1-209ENST00000479532 CUX1P39880 1505 aa10.44□□□□□ -0.74
SF3B1-209ENST00000479532 IFFO2Q5TF58 517 aa10.44□□□□□ -0.74
SF3B1-209ENST00000479532 TOP2BQ02880 1626 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms